mRNA_S-firma_F_contig10667.904.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10667.904.1
Unique NamemRNA_S-firma_F_contig10667.904.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: D8LP22_ECTSI (CDGSH iron sulfur domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP22_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.640e-44
Identity = 76/102 (74.51%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:   28 MKTACAFAILSLGCAHAFVMPAGRAVARPQTARAAEKINTIEFEPDSASCVVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVSGP 333
            MKTA A A+++LGCA+AFV+PAGR V R +TARAAEKINTIEFE D    VVT+ SV+AG  KV  YCRCWKSGTFPLCDG+HVKHN+ TGDNVGPLIVSGP
Sbjct:    1 MKTAGAIALVTLGCANAFVIPAGRTVVRAETARAAEKINTIEFELDKPK-VVTMDSVDAGGKKV--YCRCWKSGTFPLCDGAHVKHNEATGDNVGPLIVSGP 99
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: A0A7S2GPT9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GPT9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.650e-27
Identity = 56/92 (60.87%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   52 ILSLGCAHAFVMPAGRAVARPQTARAAEKINTIEFEPDSASCVVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVS 327
            +LSL    AF   A    +R +  +AAE INTI FEPDS   VVT   +EAG+ KV  +CRCWKSGTFPLCDGSHV HN+ TGDNVGPLIV+
Sbjct:   23 VLSLSSVAAFTPGATLRFSRARLVQAAEPINTIGFEPDSPK-VVTNLKLEAGEKKV--FCRCWKSGTFPLCDGSHVPHNEATGDNVGPLIVA 111
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: A0A7S2I006_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I006_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.080e-24
Identity = 60/108 (55.56%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   10 VLSPKNMK-TACAFAILSLGCAHAFVMPAGRAVARPQTARAAEKINTIEFEPDSASC-VVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVS 327
            +L+P NMK +  A  ++S   A  FV    R     QT    +K   I FE D  S  VVT   +EAGD KV  YCRCW+SGTFPLCDGSHVKHN+ETGDNVGPLIVS
Sbjct:   17 LLTPDNMKFSLIAPLLISQAAAFTFVTQPHRF----QTKLYEDKPGKINFEKDLDSPKVVTQEKLEAGDKKV--YCRCWQSGTFPLCDGSHVKHNEETGDNVGPLIVS 118
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: A0A7S3JTK3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTK3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.170e-21
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:  136 KINTIEFEPDSASCVVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVSGP 333
            KINT+  + DSA  VVT+  +EAG  K KVYCRCW SGTFPLCDG+H KHN+ TGDNVGPLIVS P
Sbjct:   52 KINTM-IDLDSAK-VVTMDELEAG--KKKVYCRCWLSGTFPLCDGTHAKHNEATGDNVGPLIVSSP 113
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: A0A7S2UEE3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEE3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.280e-20
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:  130 AEKINTIEFEPDSASCVVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVSGP 333
            AE+INT + + DS   V T+  +E G TK KVYCRCW+SGTFPLCDGSH+KHN+ TGDNVGPLIVS P
Sbjct:   33 AERINT-QVDLDSPK-VATMEKLEPG-TK-KVYCRCWQSGTFPLCDGSHMKHNEATGDNVGPLIVSVP 96
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: A0A812JQ04_9DINO (Cisd1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JQ04_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 6.370e-20
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   79 FVMPAGRAVARPQTARAAE-KINTIEFEPDSASCVVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVS 327
            F++ AGR +   +TAR AE KIN  + +P+    VVT   ++AGD KV  YCRCW SGTFPLCDG+H KHN+ TGDNVGPLIVS
Sbjct:   43 FLVLAGRQL---RTARKAEGKINN-KIDPEVPK-VVTKEDLKAGDKKV--YCRCWLSGTFPLCDGTHAKHNEATGDNVGPLIVS 119
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: A0A7S0H1H1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H1H1_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 7.780e-20
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:  130 AEKINTIEFEPDSASCVVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVSGP 333
            AEKIN  E     +  VVT+  ++ G+ KV  YCRCWKSGTFPLCDG+H K NK++GDNVGPLIVSGP
Sbjct:   80 AEKIN--ELVDLESPKVVTMEELKVGEKKV--YCRCWKSGTFPLCDGTHAKWNKQSGDNVGPLIVSGP 143
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: A0A7S2TZX7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TZX7_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 8.840e-20
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:  133 EKINTIEFEPDSASCVVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVSGP 333
            E+INT E + +S   VVT+  +  G+ KV  +CRCWKSGTFPLCDG+H K NKETGDNVGPLIVSGP
Sbjct:   85 ERINT-EVDLESPK-VVTMEDLGKGEKKV--FCRCWKSGTFPLCDGTHAKWNKETGDNVGPLIVSGP 147
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: A0A4D9DCC5_9STRA (ZnF_CDGSH domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCC5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.900e-19
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:   28 MKTACAFAILSL--GCAHAFVMPA-GRAVARPQTARAAEKINT-IEFEPDSASCVVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVSGP 333
            MK   AF  L L    A AF  P+ GR     ++   A KINT +E E      VVT+  +  G+ KV  +CRCW+SGTFPLCDG+H+KHN+ TGDNVGPLI+S P
Sbjct:    1 MKLCRAFVFLFLFASFADAFFKPSVGR-----RSLELASKINTKVELENPK---VVTMTQLAPGEKKV--FCRCWQSGTFPLCDGAHMKHNEATGDNVGPLIISNP 96
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BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Match: A0A6V0VVT1_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6V0VVT1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.260e-19
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:  133 EKINTIEFEPDSASCVVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVS 327
            +KIN +  +PDS   VV   ++EAG  K  V+CRCW SGTFP CDG+H KHN+ETGDNVGPLIV+
Sbjct:   41 DKINIVPIQPDSPK-VVDNLTLEAG--KKGVFCRCWLSGTFPNCDGTHAKHNEETGDNVGPLIVA 102
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10667.904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP22_ECTSI1.640e-4474.51CDGSH iron sulfur domain-containing protein n=1 Ta... [more]
A0A7S2GPT9_9STRA3.650e-2760.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2I006_9STRA5.080e-2455.56Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3JTK3_9STRA2.170e-2169.70Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2UEE3_9STRA2.280e-2067.65Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A812JQ04_9DINO6.370e-2059.52Cisd1 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A7S0H1H1_9EUKA7.780e-2063.24Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2TZX7_9EUKA8.840e-2065.67Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A4D9DCC5_9STRA1.900e-1950.00ZnF_CDGSH domain-containing protein n=1 Tax=Nannoc... [more]
A0A6V0VVT1_9STRA3.260e-1961.54Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10667contigS-firma_F_contig10667:585..2446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LP22
PFAMsMitoNEET_N,zf-CDGSH
Max annot lvl2759|Eukaryota
GOsGO:0000422,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0006914,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009894,GO:0009987,GO:0010150,GO:0010259,GO:0010506,GO:0012505,GO:0016020,GO:0016043,GO:0019222,GO:0019867,GO:0022411,GO:0031090,GO:0031323,GO:0031329,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0042175,GO:0042592,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048037,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051536,GO:0051537,GO:0051540,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0061726,GO:0061919,GO:0065007,GO:0065008,GO:0071840,GO:0072593,GO:0090693,GO:0098588,GO:0098771,GO:0098805,GO:0098827,GO:0099402,GO:1903008
Evalue1.88e-45
EggNOG OGsKOG3461@1|root,KOG3461@2759|Eukaryota
Description2 iron, 2 sulfur cluster binding
COG categoryO
Hectar predicted targeting categorysignal peptide
Exons3
Model size339
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10667.904.1prot_S-firma_F_contig10667.904.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10667 612..2446 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.9532042-UTR-S-firma_F_contig10667:584..6111622815605.9532042-UTR-S-firma_F_contig10667:584..611Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10667 585..611 +
1696949449.1887667-UTR-S-firma_F_contig10667:584..6111696949449.1887667-UTR-S-firma_F_contig10667:584..611Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10667 585..611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.9658494-CDS-S-firma_F_contig10667:611..7611622815605.9658494-CDS-S-firma_F_contig10667:611..761Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10667 612..761 +
1696949449.2023642-CDS-S-firma_F_contig10667:611..7611696949449.2023642-CDS-S-firma_F_contig10667:611..761Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10667 612..761 +
1622815605.9753654-CDS-S-firma_F_contig10667:1331..13871622815605.9753654-CDS-S-firma_F_contig10667:1331..1387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10667 1332..1387 +
1696949449.2137473-CDS-S-firma_F_contig10667:1331..13871696949449.2137473-CDS-S-firma_F_contig10667:1331..1387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10667 1332..1387 +
1622815605.995533-CDS-S-firma_F_contig10667:2340..24461622815605.995533-CDS-S-firma_F_contig10667:2340..2446Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10667 2341..2446 +
1696949449.224219-CDS-S-firma_F_contig10667:2340..24461696949449.224219-CDS-S-firma_F_contig10667:2340..2446Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10667 2341..2446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10667.904.1

>prot_S-firma_F_contig10667.904.1 ID=prot_S-firma_F_contig10667.904.1|Name=mRNA_S-firma_F_contig10667.904.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=104bp
MKTACAFAILSLGCAHAFVMPAGRAVARPQTARAAEKINTIEFEPDSASC
VVTIASVEAGDTKVKVYCRCWKSGTFPLCDGSHVKHNKETGDNVGPLIVS
GPM*
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mRNA from alignment at S-firma_F_contig10667:585..2446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10667.904.1 ID=mRNA_S-firma_F_contig10667.904.1|Name=mRNA_S-firma_F_contig10667.904.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1862bp|location=Sequence derived from alignment at S-firma_F_contig10667:585..2446+ (Sphaerotrichia firma ET2_F female)
ACACGTCCTGTCCTCTCCCCCAAAAACATGAAGACTGCTTGCGCTTTCGC
GATCCTCAGTCTGGGCTGCGCCCATGCCTTCGTCATGCCCGCTGGCCGTG
CGGTGGCGCGCCCGCAGACAGCTAGAGCCGCGGAAAAAATCAACACGATC
GAGTTTGAACCGGACTCAGCGTCGTGTGTGAGTTTGAACCGGACTCAGCG
ACGGTGTGTGTGTGTTGTAATGTTGTGATCATCAGGGCGGTTGCACGCTG
CTCAAGAGATTGACGACGCACGCCTCTACGCTGCTGCAGCACCTTGTGCA
CCCATCTCTATCGAGCAATCTCGAGTATTGCTGTTGTGGTTCTTGCAACG
CAAACACTGCATCAAAGCAGGCTTTGTTGAGTTGTACGAGCACTGAGCGG
CTGAGCAGAGCGTCATGTTGCGGCCGAAGTTCATGGTTGCTTCTCCACCC
GAAGATGGCCACGAGGAGAGAGAACGGAGGGTGCAGTCTTTGTCTTCGTG
CTGTCGAGTCACGATCGATGCGTAGCATAACCGCTCATTCTTTGAGGCAT
AGTCTAGTGCTGTTTTTCGTTTTTCGTTTTTCCGCTCACGACGAGTTGTC
ATGAGATCATGATGAGTCGAGCTAATCGCAGGCAGGATTGCTGTTTTCTG
TGTCCGCAGCTGCTTTACGATACAACCTACTCCACACCAAACACCCTACT
TTGTCCAACCGCCGGCCCACCGTACGAAATGCCACGTTTTCACGCAGGTG
GTGACGATTGCGTCTGTAGAAGCCGGCGACACGAAGGTTAAGGTTTACTG
CCGGTGAGAACAAACTCGACGAAAGTTTTTTAGATCCCTTCCTTCTCCAT
GCCAGGTTACATGCTGGGACAGCCGTCACGCAGGCCTTCACATCCCTGTT
TTTTGGGTCCGTTTACCATGAGTGTGCTTCTACATGCGTGCACTTGTGGC
AACAGAGTGCAGGAAGCACTGGCATAGATGGGATCGCGCCTCATCCCTAA
GGGTCGTGTGTGAGAAAGAGATGTCGTTTACGACGAGAATGGTCCCCGTA
CGGTCTCCCGGCAGGATGCGGGTGAAAGGTGAAAGCGCCTGCACGGCGGG
CTTTTGTATGTTGTGCCGGTGTTTGGGTTGGTGTGGGTTGGGTAGTTGGT
TTGGACCCGAGAAGGTGTGTGTATGTTGGTTCGTGCGTGGACCGTTCGCT
AATAAGCAGAGTTGACAAATTACTATATGTAGAATAAAAAGATTCTTCAC
CACTCGTGTGTTCGTAGACCACGGCTCGTATATTTGGAGTTCGGCGGCGG
TGTGTGTACCGTCCGTTGTTGTATTCGACGACTTTCGTTGTTAAACGTTG
TAATGAAGTGCGCAAAGCGGGGGAGGGGGGGTAGTGGGCCGTCGAGTTTC
AACAGTCAAATCGTTCTTGCGGAACTCAGTACAACGTCTGAATCTCTGGA
CGGACCGTTGTGCGCCCCCTTTTGCTATCATTTCGACCTTTGTGGGGCTC
TGTGCGTTATTGTCGCTTTCCGTTGAGCAATGGAGACCCTCCCCGACAAG
ACATTCTTGATGTATGATAGCCTGCAAGGTAATTTTCTGTGCTCTTGCAC
GCTTGCATTGTATGTTGTGATGCTTCCTCTGTTGGTTGCTGCGTATCTGC
TTTTCTAGTTGTACGATGTACCTGCTATTGTCACTGCAGCGCACAGAGAG
TAATCTCACCCCCCTTCTTGCTGCGTCGCTCTCTTGGTGTGGTGTTTGTC
AACAAGGTGCTGGAAGTCCGGCACCTTCCCCCTGTGCGACGGATCGCACG
TAAAGCACAACAAGGAGACCGGAGACAACGTTGGCCCGCTCATTGTGTCA
GGCCCCATGTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10667:585..2446+

>mRNA_S-firma_F_contig10667.904.1 ID=mRNA_S-firma_F_contig10667.904.1|Name=mRNA_S-firma_F_contig10667.904.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=624bp|location=Sequence derived from alignment at S-firma_F_contig10667:585..2446+ (Sphaerotrichia firma ET2_F female)
ATGAAGACTGCTTGCGCTTTCGCGATCCTCAGTCTGGGCTGCGCCCATGC
CTTCGTCATGCCCGCTGGCCGTGCGGTGGCGCGCCCGCAGACAGCTAGAG
CCGCGGAAAAAATCAACACGATCGAGTTTGAACCGGACTCAGCGTCGTGT
ATGAAGACTGCTTGCGCTTTCGCGATCCTCAGTCTGGGCTGCGCCCATGC
CTTCGTCATGCCCGCTGGCCGTGCGGTGGCGCGCCCGCAGACAGCTAGAG
CCGCGGAAAAAATCAACACGATCGAGTTTGAACCGGACTCAGCGTCGTGT
GTGGTGACGATTGCGTCTGTAGAAGCCGGCGACACGAAGGTTAAGGTTTA
CTGCCGGTGGTGACGATTGCGTCTGTAGAAGCCGGCGACACGAAGGTTAA
GGTTTACTGCCGGTGCTGGAAGTCCGGCACCTTCCCCCTGTGCGACGGAT
CGCACGTAAAGCACAACAAGGAGACCGGAGACAACGTTGGCCCGCTCATT
GTGTCAGGCCCCATGTAAGTGCTGGAAGTCCGGCACCTTCCCCCTGTGCG
ACGGATCGCACGTAAAGCACAACAAGGAGACCGGAGACAACGTTGGCCCG
CTCATTGTGTCAGGCCCCATGTAA
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