mRNA_S-firma_F_contig10666.903.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10666.903.1
Unique NamemRNA_S-firma_F_contig10666.903.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10666.903.1 vs. uniprot
Match: D8LCI2_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.800e-17
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 MPTWRCGHPGCDKHSSYGVKGSKEREFCGRHAKDGMVDVRSK 126
            M TWRCGHPGC KHSSYGVKG+KEREFCGRHAK GMVDVRSK
Sbjct:    1 MVTWRCGHPGCGKHSSYGVKGTKEREFCGRHAKMGMVDVRSK 42
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BLAST of mRNA_S-firma_F_contig10666.903.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.690e-6
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   13 RCGHPGCDKHSSYGVKGSKEREFCGRHAKDGMVDVRSK 126
            +CGH  C K  +YGV GSK+REFC +HA+DGMV+V +K
Sbjct:    3 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 40
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BLAST of mRNA_S-firma_F_contig10666.903.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.460e-6
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   13 RCGHPGCDKHSSYGVKGSKEREFCGRHAKDGMVDVRSK 126
            +CGH  C K  +YGV GSK+REFC +HA+DGMV+V +K
Sbjct:   63 QCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 100
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10666.903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCI2_ECTSI3.800e-1790.48EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2... [more]
D7FI73_ECTSI3.690e-660.53EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE4.460e-660.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10666contigS-firma_F_contig10666:1399..2193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FLV4
Max annot lvl2880.D7FLV4|-
Evalue2.17e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-26_005130.1
Exons1
Model size795
Cds size795
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.9113588-CDS-S-firma_F_contig10666:1398..21931622815605.9113588-CDS-S-firma_F_contig10666:1398..2193Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10666 1399..2193 -
1696949449.1779835-CDS-S-firma_F_contig10666:1398..21931696949449.1779835-CDS-S-firma_F_contig10666:1398..2193Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10666 1399..2193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10666.903.1prot_S-firma_F_contig10666.903.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10666 1399..2193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10666.903.1

>prot_S-firma_F_contig10666.903.1 ID=prot_S-firma_F_contig10666.903.1|Name=mRNA_S-firma_F_contig10666.903.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=265bp
MPTWRCGHPGCDKHSSYGVKGSKEREFCGRHAKDGMVDVRSKRCGQEGCE
KHPSFGMDGSKKAEFCAQHAKAGMVNVSNKRCGFPSCTTRASFGVEGTKR
AEFCAQHAKDGMVDVWSKRNRCGHPGCITRASYAANGSKKGEFCARHAKD
GMINVNNKKQKGVKDRRWFGADGEAAEESAAGGVSGGGGGMGVGMGMGGI
EELLKSTDSLGDTAAAGAKRSRPIAAMLTEESAEETAAAARLFMGLRTAR
RKVDEDGSLGLASR*
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mRNA from alignment at S-firma_F_contig10666:1399..2193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10666.903.1 ID=mRNA_S-firma_F_contig10666.903.1|Name=mRNA_S-firma_F_contig10666.903.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=795bp|location=Sequence derived from alignment at S-firma_F_contig10666:1399..2193- (Sphaerotrichia firma ET2_F female)
ATGCCGACCTGGAGGTGCGGGCACCCTGGTTGCGACAAGCACTCGTCGTA
CGGCGTCAAGGGCAGCAAGGAGCGCGAGTTCTGCGGCCGACATGCGAAAG
ATGGGATGGTCGACGTGAGGAGCAAGAGGTGCGGCCAGGAGGGTTGCGAG
AAGCACCCGTCGTTCGGCATGGACGGGAGCAAGAAGGCGGAATTCTGCGC
GCAGCATGCGAAGGCGGGCATGGTCAACGTTAGCAACAAGAGGTGCGGCT
TCCCCAGCTGCACCACGCGCGCGAGCTTCGGGGTGGAGGGGACCAAAAGG
GCAGAGTTCTGCGCCCAACATGCCAAGGACGGAATGGTCGACGTCTGGAG
CAAGAGGAACCGCTGCGGCCACCCGGGCTGCATCACTCGGGCGAGCTACG
CGGCGAACGGCAGCAAGAAGGGGGAGTTCTGCGCCCGCCACGCCAAGGAC
GGCATGATCAACGTCAACAACAAGAAGCAGAAAGGGGTGAAGGACAGGAG
GTGGTTCGGCGCCGACGGCGAGGCAGCGGAAGAGTCGGCGGCCGGCGGCG
TGAGCGGCGGCGGCGGCGGGATGGGGGTGGGCATGGGCATGGGCGGGATA
GAGGAGCTGCTCAAGAGCACCGACAGCTTGGGCGACACGGCGGCGGCGGG
CGCGAAGCGGAGCCGCCCTATCGCCGCAATGCTGACGGAGGAGTCCGCCG
AGGAAACCGCCGCCGCCGCCCGCCTCTTCATGGGCCTGAGAACGGCGCGG
AGGAAGGTGGACGAGGACGGGAGTCTTGGGCTAGCCTCGAGATAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10666:1399..2193-

>mRNA_S-firma_F_contig10666.903.1 ID=mRNA_S-firma_F_contig10666.903.1|Name=mRNA_S-firma_F_contig10666.903.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1590bp|location=Sequence derived from alignment at S-firma_F_contig10666:1399..2193- (Sphaerotrichia firma ET2_F female)
ATGCCGACCTGGAGGTGCGGGCACCCTGGTTGCGACAAGCACTCGTCGTA
CGGCGTCAAGGGCAGCAAGGAGCGCGAGTTCTGCGGCCGACATGCGAAAG
ATGGGATGGTCGACGTGAGGAGCAAGAGGTGCGGCCAGGAGGGTTGCGAG
AAGCACCCGTCGTTCGGCATGGACGGGAGCAAGAAGGCGGAATTCTGCGC
GCAGCATGCGAAGGCGGGCATGGTCAACGTTAGCAACAAGAGGTGCGGCT
TCCCCAGCTGCACCACGCGCGCGAGCTTCGGGGTGGAGGGGACCAAAAGG
GCAGAGTTCTGCGCCCAACATGCCAAGGACGGAATGGTCGACGTCTGGAG
CAAGAGGAACCGCTGCGGCCACCCGGGCTGCATCACTCGGGCGAGCTACG
CGGCGAACGGCAGCAAGAAGGGGGAGTTCTGCGCCCGCCACGCCAAGGAC
GGCATGATCAACGTCAACAACAAGAAGCAGAAAGGGGTGAAGGACAGGAG
GTGGTTCGGCGCCGACGGCGAGGCAGCGGAAGAGTCGGCGGCCGGCGGCG
TGAGCGGCGGCGGCGGCGGGATGGGGGTGGGCATGGGCATGGGCGGGATA
GAGGAGCTGCTCAAGAGCACCGACAGCTTGGGCGACACGGCGGCGGCGGG
CGCGAAGCGGAGCCGCCCTATCGCCGCAATGCTGACGGAGGAGTCCGCCG
AGGAAACCGCCGCCGCCGCCCGCCTCTTCATGGGCCTGAGAACGGCGCGG
AGGAAGGTGGACGAGGACGGGAGTCTTGGGCTAGCCTCGAGATAGATGCC
GACCTGGAGGTGCGGGCACCCTGGTTGCGACAAGCACTCGTCGTACGGCG
TCAAGGGCAGCAAGGAGCGCGAGTTCTGCGGCCGACATGCGAAAGATGGG
ATGGTCGACGTGAGGAGCAAGAGGTGCGGCCAGGAGGGTTGCGAGAAGCA
CCCGTCGTTCGGCATGGACGGGAGCAAGAAGGCGGAATTCTGCGCGCAGC
ATGCGAAGGCGGGCATGGTCAACGTTAGCAACAAGAGGTGCGGCTTCCCC
AGCTGCACCACGCGCGCGAGCTTCGGGGTGGAGGGGACCAAAAGGGCAGA
GTTCTGCGCCCAACATGCCAAGGACGGAATGGTCGACGTCTGGAGCAAGA
GGAACCGCTGCGGCCACCCGGGCTGCATCACTCGGGCGAGCTACGCGGCG
AACGGCAGCAAGAAGGGGGAGTTCTGCGCCCGCCACGCCAAGGACGGCAT
GATCAACGTCAACAACAAGAAGCAGAAAGGGGTGAAGGACAGGAGGTGGT
TCGGCGCCGACGGCGAGGCAGCGGAAGAGTCGGCGGCCGGCGGCGTGAGC
GGCGGCGGCGGCGGGATGGGGGTGGGCATGGGCATGGGCGGGATAGAGGA
GCTGCTCAAGAGCACCGACAGCTTGGGCGACACGGCGGCGGCGGGCGCGA
AGCGGAGCCGCCCTATCGCCGCAATGCTGACGGAGGAGTCCGCCGAGGAA
ACCGCCGCCGCCGCCCGCCTCTTCATGGGCCTGAGAACGGCGCGGAGGAA
GGTGGACGAGGACGGGAGTCTTGGGCTAGCCTCGAGATAG
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