mRNA_S-firma_F_contig10662.900.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10662.900.1
Unique NamemRNA_S-firma_F_contig10662.900.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10662.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10662contigS-firma_F_contig10662:942..1301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.7064676-CDS-S-firma_F_contig10662:941..13011622815605.7064676-CDS-S-firma_F_contig10662:941..1301Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10662 942..1301 +
1696949449.0455725-CDS-S-firma_F_contig10662:941..13011696949449.0455725-CDS-S-firma_F_contig10662:941..1301Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10662 942..1301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10662.900.1prot_S-firma_F_contig10662.900.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10662 942..1301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10662.900.1

>prot_S-firma_F_contig10662.900.1 ID=prot_S-firma_F_contig10662.900.1|Name=mRNA_S-firma_F_contig10662.900.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=120bp
AAQARLTRPAPGHITNSFGRAASSTEAKDSGDEVECLGDNTDDRERSSSP
SPVPGDGEDDRVSCSAGDGMDSLMGGIDDEQAVPEPSPCPGYRPCLPASP
AAMGYPFGQHCSEESGRTIN
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mRNA from alignment at S-firma_F_contig10662:942..1301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10662.900.1 ID=mRNA_S-firma_F_contig10662.900.1|Name=mRNA_S-firma_F_contig10662.900.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=360bp|location=Sequence derived from alignment at S-firma_F_contig10662:942..1301+ (Sphaerotrichia firma ET2_F female)
GCGGCCCAGGCGAGACTGACGAGGCCGGCGCCGGGGCACATCACGAATTC
TTTTGGCCGTGCGGCAAGCTCCACCGAAGCTAAGGACTCTGGAGATGAAG
TCGAATGCCTTGGAGACAACACCGATGACCGGGAACGGTCGTCGTCGCCG
TCACCAGTCCCGGGCGACGGAGAAGATGACAGAGTTAGCTGCAGCGCAGG
GGACGGCATGGACTCCCTGATGGGCGGCATCGACGACGAACAGGCGGTTC
CCGAGCCTTCACCGTGCCCAGGATACAGGCCGTGCTTGCCAGCATCACCT
GCCGCTATGGGGTACCCGTTCGGACAACACTGCAGTGAGGAGTCCGGTAG
GACCATCAAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10662:942..1301+

>mRNA_S-firma_F_contig10662.900.1 ID=mRNA_S-firma_F_contig10662.900.1|Name=mRNA_S-firma_F_contig10662.900.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=720bp|location=Sequence derived from alignment at S-firma_F_contig10662:942..1301+ (Sphaerotrichia firma ET2_F female)
GCGGCCCAGGCGAGACTGACGAGGCCGGCGCCGGGGCACATCACGAATTC
TTTTGGCCGTGCGGCAAGCTCCACCGAAGCTAAGGACTCTGGAGATGAAG
TCGAATGCCTTGGAGACAACACCGATGACCGGGAACGGTCGTCGTCGCCG
TCACCAGTCCCGGGCGACGGAGAAGATGACAGAGTTAGCTGCAGCGCAGG
GGACGGCATGGACTCCCTGATGGGCGGCATCGACGACGAACAGGCGGTTC
CCGAGCCTTCACCGTGCCCAGGATACAGGCCGTGCTTGCCAGCATCACCT
GCCGCTATGGGGTACCCGTTCGGACAACACTGCAGTGAGGAGTCCGGTAG
GACCATCAACGCGGCCCAGGCGAGACTGACGAGGCCGGCGCCGGGGCACA
TCACGAATTCTTTTGGCCGTGCGGCAAGCTCCACCGAAGCTAAGGACTCT
GGAGATGAAGTCGAATGCCTTGGAGACAACACCGATGACCGGGAACGGTC
GTCGTCGCCGTCACCAGTCCCGGGCGACGGAGAAGATGACAGAGTTAGCT
GCAGCGCAGGGGACGGCATGGACTCCCTGATGGGCGGCATCGACGACGAA
CAGGCGGTTCCCGAGCCTTCACCGTGCCCAGGATACAGGCCGTGCTTGCC
AGCATCACCTGCCGCTATGGGGTACCCGTTCGGACAACACTGCAGTGAGG
AGTCCGGTAGGACCATCAAC
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