mRNA_S-firma_F_contig10661.899.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10661.899.1
Unique NamemRNA_S-firma_F_contig10661.899.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: S9X1T8_CAMFR (Solute carrier family 24 (Sodium/potassium/calcium exchanger), member 4 isoform 1 n=1 Tax=Camelus ferus TaxID=419612 RepID=S9X1T8_CAMFR)

HSP 1 Score: 205 bits (521), Expect = 6.200e-61
Identity = 102/195 (52.31%), Postives = 141/195 (72.31%), Query Frame = 1
Query:   94 FDIPSSAGGRVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEYSV 678
            F +P + G +  WV  +PL F + ITIP+CS P+W+ ++ LTF M+ LWIA F+Y MVW  + +G+TLGIPD IMG+T LAAGTS+PD ++S+IVAR G GDMAVS++IGSNVFDI +GL +PW L+T++++ GSTV I S GL   V+ LL  V + VL I    W LD KLG  + +LY +FL  S+++E++V
Sbjct:  188 FSVPEARGDKAKWVFTWPLIFLLRITIPNCSKPRWEKFFLLTFVMATLWIAVFSYLMVWLVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGIPWGLQTMLINYGSTVKINSRGLVYSVVLLLGSVALTVLGIHLNKWKLDRKLGVYVLVLYAIFLCFSIMIEFNV 382          
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: A0A7M4ENE4_CROPO (Solute carrier family 24 member 4 n=1 Tax=Crocodylus porosus TaxID=8502 RepID=A0A7M4ENE4_CROPO)

HSP 1 Score: 202 bits (513), Expect = 9.140e-61
Identity = 103/195 (52.82%), Postives = 140/195 (71.79%), Query Frame = 1
Query:   94 FDIPSSAGGRVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEYSV 678
            F IP     ++ W+L +PL F +  TIP+CS P+W+N++ LTF +S LWIA F+Y MVW  + +G+TLGIPD IMG+T LAAGTS+PD ++S+IVAR G GDMAVS++IGSNVFDI +GL +PW L+T++VD GS+V I S GL   V+ LL  V + V  I    W LD KLG  + +LY +FL  S+L+E++V
Sbjct:  101 FSIPDGKVNKIKWILTWPLIFLLFCTIPNCSKPRWENFFMLTFILSTLWIALFSYFMVWMVTVIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVVDYGSSVRINSKGLVYSVVLLLGSVGLTVAGIHINQWKLDKKLGLYVLLLYAIFLCFSILIEFNV 295          
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: A0A6I9NCA1_9TELE (sodium/potassium/calcium exchanger 3-like n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6I9NCA1_9TELE)

HSP 1 Score: 199 bits (507), Expect = 1.440e-60
Identity = 100/195 (51.28%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   94 FDIPSSAGGRVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEYSV 678
            F  P+    ++ W++ +PL   +  T+P+CSTP+W N++ L+F  S LWIAGF+Y MVW  + +GFTLGIPD IMG+T LAAGTS+PD ++S+IVAR G GDMAVS+SIGSNVFDI +GL LPW +KT+ ++ GS + I S GL   V  LL  V + VL +    W LD +LG+   +LY VFL  S L+EY++
Sbjct:   47 FQCPAGGFNKLKWLVAWPLCLLLYFTVPNCSTPRWDNYFMLSFFCSTLWIAGFSYIMVWMVTVIGFTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNVFDILVGLGLPWSVKTLAINYGSDIKINSKGLIFSVGLLLASVFMTVLGVHLNKWTLDKRLGFTCLLLYSVFLCVSCLIEYNI 241          
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: A0A672PD59_SINGR (Solute carrier family 24 member 3 n=2 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A672PD59_SINGR)

HSP 1 Score: 206 bits (524), Expect = 1.550e-60
Identity = 98/195 (50.26%), Postives = 140/195 (71.79%), Query Frame = 1
Query:   94 FDIPSSAGGRVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEYSV 678
            F  P     ++ W+L +PL   + +T+P+CSTP+W+ WY ++F +S LWIA F+Y MVW  + +G+T+GIPD IMG+T LAAGTS+PD L+S+IVAR G GDMAVS+SIGSNVFDI +GL LPW L+T+ +D GST+ + S GL   V+ LL  V + VL +    W LD +LG++  ++Y VFL  S+L+E+++
Sbjct:  269 FRCPGGGFNKLKWLLAWPLSLLLFLTVPNCSTPRWERWYMVSFIISTLWIAFFSYIMVWMVTVIGYTMGIPDVIMGITFLAAGTSVPDCLASLIVARQGMGDMAVSNSIGSNVFDILIGLGLPWTLQTLAIDYGSTIHLNSKGLIFSVVLLLASVFLTVLGVHLNKWKLDKRLGFVCLLMYAVFLCFSILIEFNI 463          
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: A0A7S3XY76_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY76_HETAK)

HSP 1 Score: 201 bits (510), Expect = 2.980e-60
Identity = 105/184 (57.07%), Postives = 138/184 (75.00%), Query Frame = 1
Query:  121 RVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEY 672
            +V + L FP+   +  TIPDC+  K+KN+Y +TF +S++WI  FAY MVWW    G  + +P A+MG+TI+AAGTSIPDALSSV VA  G+GDMAVSSSIGSN+FDI +GLP+PWL  T+I   G T  I+S GL   +ITL+LMVV VV SI +TGWVLD KLG IM ILY++FL++S+++ +
Sbjct:  131 KVLFCLGFPVVAALHYTIPDCTQDKYKNFYWVTFVLSLVWITFFAYFMVWWVMMFGEIIRVPSAVMGITIIAAGTSIPDALSSVSVAVKGFGDMAVSSSIGSNIFDILVGLPIPWLAYTLI--SGQTQKIQSSGLLWSIITLILMVVAVVFSIMYTGWVLDHKLGGIMMILYILFLIESIILAF 312          
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: A0A0S7LTD3_9TELE (NCKX3 n=3 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LTD3_9TELE)

HSP 1 Score: 197 bits (500), Expect = 6.310e-60
Identity = 100/193 (51.81%), Postives = 135/193 (69.95%), Query Frame = 1
Query:  106 SSAG--GRVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEYSV 678
            S+AG   ++ W+L +PL   +  T+P+CS P+W+NW+ ++F  S LWIA F+Y MVW  + +GFTLGIPD IMG+T LAAGTS+PD ++SVIVAR G GDMA+S+SIGSNVFDI +GL LPW L+T+ +D GS V + S GL   V  LL  V   VL +    W LD +LG    ++Y VFL  S+L+E++V
Sbjct:   17 SAAGVFNKLKWLLAWPLCLVLFFTVPNCSKPRWENWFMVSFIFSTLWIASFSYIMVWMVTVIGFTLGIPDVIMGITFLAAGTSVPDCMASVIVARQGLGDMAISNSIGSNVFDILVGLGLPWALQTLCIDYGSNVHLNSRGLIFSVGILLASVFFTVLGVHLNKWTLDWRLGLACIVMYAVFLCFSVLIEFNV 209          
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: A0A7N6B5E7_ANATE (Sodium/potassium/calcium exchanger 3-like n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N6B5E7_ANATE)

HSP 1 Score: 205 bits (521), Expect = 6.310e-60
Identity = 102/195 (52.31%), Postives = 137/195 (70.26%), Query Frame = 1
Query:   94 FDIPSSAGGRVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEYSV 678
            F  P+ A  ++ W+L +PL   +  T+P+CSTP+W+NW+ L+F  S LWIA F+Y MVW  + +GFTLGIPD IMG+T LAAGTS+PD ++S+IVAR G GDMAVS+SIGSNVFDI +GL LPW LKT+ ++ GS + + S GL   V  LL  V + VL +    W LD +LG +  +LY VFL  S L+EY++
Sbjct:  286 FQCPAGAFNKLKWLLAWPLCLLLYFTVPNCSTPRWENWFMLSFVSSTLWIAAFSYIMVWMVTVIGFTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNVFDILVGLGLPWALKTLAINYGSDIKLNSKGLIFSVGLLLASVFLTVLGVHINKWTLDRRLGLMCLLLYSVFLCFSCLIEYNI 480          
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: A0A673NGR8_9TELE (Sodium/potassium/calcium exchanger 3-like n=2 Tax=Cyprininae TaxID=2743694 RepID=A0A673NGR8_9TELE)

HSP 1 Score: 204 bits (520), Expect = 6.500e-60
Identity = 99/194 (51.03%), Postives = 142/194 (73.20%), Query Frame = 1
Query:  106 SSAGG---RVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEYSV 678
            + AGG   ++ W+L +PL   + +T+P+CSTP+W+ WY ++F +S LWIA F+Y MVW  + +G+T+GIPD IMG+T LAAGTS+PD L+S+IVAR G GDMAVS+SIGSNVFDI +GL LPW L+T+ +D GST+ + S GL   V+ LL  V + VL +    W LD +LG++  ++Y VFL  S+L+E+++
Sbjct:  273 AEAGGGFNKLKWLLAWPLSLLLFLTVPNCSTPRWERWYMVSFIISTLWIAFFSYIMVWMVTVIGYTMGIPDVIMGITFLAAGTSVPDCLASLIVARQGMGDMAVSNSIGSNVFDILIGLGLPWTLQTLAIDYGSTIHLNSKGLIFSVVLLLASVFLTVLGVHLNKWKLDKRLGFVCLLMYAVFLCFSILIEFNI 466          
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: S7MM29_MYOBR (Sodium/potassium/calcium exchanger 4 n=2 Tax=Myotis brandtii TaxID=109478 RepID=S7MM29_MYOBR)

HSP 1 Score: 199 bits (507), Expect = 7.310e-60
Identity = 98/195 (50.26%), Postives = 139/195 (71.28%), Query Frame = 1
Query:   94 FDIPSSAGGRVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEYSV 678
            F +P + G +  WV  +PL F + +TIP+CS P+W+ ++ +TF  + LWIA F+Y MVW  + +G+T GIPD IMG+T LAAGTS+PD ++S+IVAR G GDMAVS++IGSNVFDI +GL +PW L+T++++ GSTV I S GL   V+ LL  V + VL I    W LD KLG  + +LY +FL  S+++E++V
Sbjct:  101 FSVPEARGDKAKWVFTWPLIFLLGVTIPNCSKPRWEKFFMVTFLTATLWIAVFSYLMVWLVTIIGYTFGIPDVIMGITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGIPWGLQTMVINYGSTVKINSRGLVYSVVLLLGSVALTVLGIHLNKWRLDWKLGVYVLVLYAIFLCFSIMIEFNV 295          
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Match: A0A673AEF5_9TELE (Solute carrier family 24 member 3 n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673AEF5_9TELE)

HSP 1 Score: 206 bits (524), Expect = 7.360e-60
Identity = 102/195 (52.31%), Postives = 138/195 (70.77%), Query Frame = 1
Query:   94 FDIPSSAGGRVAWVLLFPLKFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLGIPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMGLPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVLDMKLGWIMFILYVVFLVQSLLMEYSV 678
            F  P+ A  ++ W+L +PL   +  TIP+CSTP+W+NW+ L+F  S LWIA F+Y MVW  + +GFTLGIPD IMG+T LAAGTS+PD ++S+IVAR G GDMAVS+SIGSNVFDI +GL LPW LKT+ ++ GS + + S GL   V  LL  V + VL +    W LD +LG++  +LY +FL  S L+EY++
Sbjct:  342 FQCPAGAFNKLKWLLAWPLCLVLYFTIPNCSTPRWENWFMLSFVSSTLWIASFSYIMVWMVTVIGFTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNVFDILVGLGLPWALKTLAINYGSDIKLNSKGLIFSVGLLLASVFMTVLGVHLNKWTLDKRLGFMCLLLYSIFLCFSCLIEYNI 536          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10661.899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S9X1T8_CAMFR6.200e-6152.31Solute carrier family 24 (Sodium/potassium/calcium... [more]
A0A7M4ENE4_CROPO9.140e-6152.82Solute carrier family 24 member 4 n=1 Tax=Crocodyl... [more]
A0A6I9NCA1_9TELE1.440e-6051.28sodium/potassium/calcium exchanger 3-like n=2 Tax=... [more]
A0A672PD59_SINGR1.550e-6050.26Solute carrier family 24 member 3 n=2 Tax=Sinocycl... [more]
A0A7S3XY76_HETAK2.980e-6057.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0S7LTD3_9TELE6.310e-6051.81NCKX3 n=3 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
A0A7N6B5E7_ANATE6.310e-6052.31Sodium/potassium/calcium exchanger 3-like n=1 Tax=... [more]
A0A673NGR8_9TELE6.500e-6051.03Sodium/potassium/calcium exchanger 3-like n=2 Tax=... [more]
S7MM29_MYOBR7.310e-6050.26Sodium/potassium/calcium exchanger 4 n=2 Tax=Myoti... [more]
A0A673AEF5_9TELE7.360e-6052.31Solute carrier family 24 member 3 n=1 Tax=Sphaeram... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10661contigS-firma_F_contig10661:1326..2086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog72004.XP_005905132.1
Preferred nameSLC24A4
PFAMsNa_Ca_ex
Max annot lvl33208|Metazoa
KEGG koko:K13751,ko:K13752
KEGG TC2.A.19.4,2.A.19.4.5
KEGG Pathwayko04740,map04740
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005432,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0007275,GO:0007600,GO:0007606,GO:0007608,GO:0008150,GO:0008273,GO:0008324,GO:0009653,GO:0009887,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015085,GO:0015267,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0019725,GO:0022803,GO:0022804,GO:0022821,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030955,GO:0031224,GO:0031226,GO:0031402,GO:0031420,GO:0032501,GO:0032502,GO:0034220,GO:0035725,GO:0042475,GO:0042476,GO:0042592,GO:0043167,GO:0043169,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048878,GO:0050801,GO:0050877,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071804,GO:0071805,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0097186,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516
Evalue3.21e-60
EggNOG OGsCOG0530@1|root,KOG1307@2759|Eukaryota,38CGX@33154|Opisthokonta,3B994@33208|Metazoa,3CRWG@33213|Bilateria,480KJ@7711|Chordata,495Q1@7742|Vertebrata,3JCYS@40674|Mammalia,4J4KM@91561|Cetartiodactyla
DescriptionSodium potassium calcium exchanger
COG categoryPT
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size696
Cds size696
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.6567638-CDS-S-firma_F_contig10661:1325..18351622815605.6567638-CDS-S-firma_F_contig10661:1325..1835Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10661 1326..1835 -
1696949449.015947-CDS-S-firma_F_contig10661:1325..18351696949449.015947-CDS-S-firma_F_contig10661:1325..1835Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10661 1326..1835 -
1622815605.6716137-CDS-S-firma_F_contig10661:1900..20861622815605.6716137-CDS-S-firma_F_contig10661:1900..2086Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10661 1901..2086 -
1696949449.0322337-CDS-S-firma_F_contig10661:1900..20861696949449.0322337-CDS-S-firma_F_contig10661:1900..2086Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10661 1901..2086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10661.899.1prot_S-firma_F_contig10661.899.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10661 1326..2086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10661.899.1

>prot_S-firma_F_contig10661.899.1 ID=prot_S-firma_F_contig10661.899.1|Name=mRNA_S-firma_F_contig10661.899.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=232bp
KASTSATDAAEEKAPESSTEAEEEEDDDEGLFDIPSSAGGRVAWVLLFPL
KFCMAITIPDCSTPKWKNWYALTFTMSVLWIAGFAYCMVWWSSTMGFTLG
IPDAIMGLTILAAGTSIPDALSSVIVARNGYGDMAVSSSIGSNVFDINMG
LPLPWLLKTVIVDPGSTVSIESCGLPILVITLLLMVVVVVLSIRFTGWVL
DMKLGWIMFILYVVFLVQSLLMEYSVIDVSC*
back to top

mRNA from alignment at S-firma_F_contig10661:1326..2086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10661.899.1 ID=mRNA_S-firma_F_contig10661.899.1|Name=mRNA_S-firma_F_contig10661.899.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=761bp|location=Sequence derived from alignment at S-firma_F_contig10661:1326..2086- (Sphaerotrichia firma ET2_F female)
AAGGCGAGCACCTCGGCAACAGACGCCGCAGAAGAAAAGGCACCCGAGTC CTCCACGGAGGCCGAGGAGGAGGAAGATGACGACGAAGGGCTGTTTGACA TCCCATCGTCTGCCGGGGGGCGCGTTGCCTGGGTGCTCCTGTTCCCCCTC AAGTTCTGCATGGCGATCACCATACCAGACTGCTCCGTGCGTTTGAGTGT GCCAGTTGTTCATGGTTGTGTGACCCCCCCCCCCCCCCCCCTTCTCCGCA GACGCCTAAGTGGAAGAACTGGTACGCCTTGACGTTCACCATGTCCGTGC TGTGGATCGCCGGGTTTGCGTACTGCATGGTGTGGTGGTCGTCAACCATG GGGTTCACATTGGGCATTCCCGACGCCATCATGGGGCTGACCATCCTGGC CGCGGGCACCTCCATTCCGGACGCCCTGTCGTCGGTGATTGTGGCCCGCA ACGGCTACGGCGACATGGCTGTGTCATCGTCCATTGGCTCCAACGTGTTT GACATCAACATGGGGCTGCCGTTGCCGTGGCTCCTCAAGACGGTGATTGT CGACCCCGGCAGCACCGTTAGCATTGAGTCCTGTGGGCTCCCCATCCTGG TCATCACACTGCTGCTGATGGTGGTCGTGGTGGTCCTCTCCATCCGGTTC ACCGGCTGGGTGCTGGACATGAAACTCGGCTGGATCATGTTCATCCTGTA CGTTGTGTTTTTGGTGCAGTCGTTGCTCATGGAGTATTCCGTGATTGACG TGTCCTGCTAA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10661:1326..2086-

>mRNA_S-firma_F_contig10661.899.1 ID=mRNA_S-firma_F_contig10661.899.1|Name=mRNA_S-firma_F_contig10661.899.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1392bp|location=Sequence derived from alignment at S-firma_F_contig10661:1326..2086- (Sphaerotrichia firma ET2_F female)
AAGGCGAGCACCTCGGCAACAGACGCCGCAGAAGAAAAGGCACCCGAGTC
CTCCACGGAGGCCGAGGAGGAGGAAGATGACGACGAAGGGCTGTTTGACA
TCCCATCGTCTGCCGGGGGGCGCGTTGCCTGGGTGCTCCTGTTCCCCCTC
AAGTTCTGCATGGCGATCACCATACCAGACTGCTCCAAGGCGAGCACCTC
GGCAACAGACGCCGCAGAAGAAAAGGCACCCGAGTCCTCCACGGAGGCCG
AGGAGGAGGAAGATGACGACGAAGGGCTGTTTGACATCCCATCGTCTGCC
GGGGGGCGCGTTGCCTGGGTGCTCCTGTTCCCCCTCAAGTTCTGCATGGC
GATCACCATACCAGACTGCTCCACGCCTAAGTGGAAGAACTGGTACGCCT
TGACGTTCACCATGTCCGTGCTGTGGATCGCCGGGTTTGCGTACTGCATG
GTGTGGTGGTCGTCAACCATGGGGTTCACATTGGGCATTCCCGACGCCAT
CATGGGGCTGACCATCCTGGCCGCGGGCACCTCCATTCCGGACGCCCTGT
CGTCGGTGATTGTGGCCCGCAACGGCTACGGCGACATGGCTGTGTCATCG
TCCATTGGCTCCAACGTGTTTGACATCAACATGGGGCTGCCGTTGCCGTG
GCTCCTCAAGACGGTGATTGTCGACCCCGGCAGCACCGTTAGCATTGAGT
CCTGTGGGCTCCCCATCCTGGTCATCACACTGCTGCTGATGGTGGTCGTG
GTGGTCCTCTCCATCCGGTTCACCGGCTGGGTGCTGGACATGAAACTCGG
CTGGATCATGTTCATCCTGTACGTTGTGTTTTTGGTGCAGTCGTTGCTCA
TGGAGTATTCCGTGATTGACGTGTCCTGCTAAACGCCTAAGTGGAAGAAC
TGGTACGCCTTGACGTTCACCATGTCCGTGCTGTGGATCGCCGGGTTTGC
GTACTGCATGGTGTGGTGGTCGTCAACCATGGGGTTCACATTGGGCATTC
CCGACGCCATCATGGGGCTGACCATCCTGGCCGCGGGCACCTCCATTCCG
GACGCCCTGTCGTCGGTGATTGTGGCCCGCAACGGCTACGGCGACATGGC
TGTGTCATCGTCCATTGGCTCCAACGTGTTTGACATCAACATGGGGCTGC
CGTTGCCGTGGCTCCTCAAGACGGTGATTGTCGACCCCGGCAGCACCGTT
AGCATTGAGTCCTGTGGGCTCCCCATCCTGGTCATCACACTGCTGCTGAT
GGTGGTCGTGGTGGTCCTCTCCATCCGGTTCACCGGCTGGGTGCTGGACA
TGAAACTCGGCTGGATCATGTTCATCCTGTACGTTGTGTTTTTGGTGCAG
TCGTTGCTCATGGAGTATTCCGTGATTGACGTGTCCTGCTAA
back to top