mRNA_S-firma_F_contig1066.896.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1066.896.1
Unique NamemRNA_S-firma_F_contig1066.896.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1066.896.1 vs. uniprot
Match: A0A6H5KK71_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK71_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 3.490e-83
Identity = 140/188 (74.47%), Postives = 150/188 (79.79%), Query Frame = 1 
Query:  106 MEAFLLKGSSTTPRTDPVRGDKAAAATLLYNPQPRQRFVFPNHNDNKHGSERKKGPPLGGGGASGYKQYRSSKLLEQAPKEASKLFTGMSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKQSLKMKVVHPDWLNRCIAEGKLLSDVPFRVVRSQKLGMGNFFGSS 669
            M+AFLLK   +        G +      LYNP PRQ FVFP  N +  G   KKGPPLGGGGASGY Q+R+SKLLEQAP   S++F G+SFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMK SLKMKVVHPDW+NRCIAEGKLL D PFRVVRSQKLGM  FFGSS
Sbjct:    1 MDAFLLKKDPSAAARLGSGGKQQTKCQFLYNPNPRQ-FVFPAPNLSNDGRSDKKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMK-SLKMKVVHPDWVNRCIAEGKLLPDAPFRVVRSQKLGMDKFFGSS 186
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BLAST of mRNA_S-firma_F_contig1066.896.1 vs. uniprot
Match: A0A0G4IYX9_PLABS (BRCT domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYX9_PLABS)

HSP 1 Score: 75.5 bits (184), Expect = 1.510e-12
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:  358 LFTGMSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKQSLKMKV--VHPDWLNRCIAEGKLLSDVPFRVVRSQKLGMGNFF 660
            +F G+  YFNGRSG+   + LK  V   GGR  P +S+K VTHV+ ENLSA+K+ K +    K +V  V P+W+   I   K + +  +R V S+   + +FF
Sbjct:   62 VFQGVCVYFNGRSGEFSALQLKSFVRLCGGRIAPMLSVKVVTHVVCENLSAIKSAKVVASGPKSRVHFVRPEWILDSIKGAKRVREHAYRAVSSRTTEITSFF 164
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BLAST of mRNA_S-firma_F_contig1066.896.1 vs. uniprot
Match: A0A485LLY2_9STRA (Aste57867_22876 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLY2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.030e-6
Identity = 43/131 (32.82%), Postives = 72/131 (54.96%), Query Frame = 1 
Query:  259 RKKGPPLGGGGASGYKQYRSSKLLE-----QAPKEASKLFTGMSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKQSLKMKVVHPDWLNRCIAEGKLLSDVPFRVVRSQ 636
            RKK  PL    +  + QY SSK+ +      + + +SKLF G++ Y NG++   + + L+  V ++GG+   +++ + VTH+IA +LS  K  +   +   + VVHP W+  CIA+ K +S   F   R Q
Sbjct:  306 RKKATPLFKQESVSFGQYMSSKISKLRGRNDSIRGSSKLFDGVAIYVNGQTQPSRDV-LRRLVLQYGGKFEQYLTDQ-VTHMIATHLSDTKFRELQSRKKPLPVVHPSWIEECIAQQKRVSTHTFIYSRYQ 434
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1066.896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KK71_9PHAE3.490e-8374.47BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A0G4IYX9_PLABS1.510e-1239.81BRCT domain-containing protein n=1 Tax=Plasmodioph... [more]
A0A485LLY2_9STRA1.030e-632.82Aste57867_22876 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1066contigS-firma_F_contig1066:16651..19221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog109760.SPPG_07441T0
PFAMsBRCT_2,PTCB-BRCT
Max annot lvl4751|Fungi
Evalue4.68e-14
EggNOG OGsCOG0389@1|root,KOG2093@2759|Eukaryota,3A7UN@33154|Opisthokonta,3P5TJ@4751|Fungi
Descriptionbreast cancer carboxy-terminal domain
COG categoryL
Hectar predicted targeting categorysignal peptide
Exons5
Model size1092
Cds size1089
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1066.896.1prot_S-firma_F_contig1066.896.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1066 16652..19221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.3745258-CDS-S-firma_F_contig1066:16651..171751622815605.3745258-CDS-S-firma_F_contig1066:16651..17175Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 16652..17175 -
1696949448.868111-CDS-S-firma_F_contig1066:16651..171751696949448.868111-CDS-S-firma_F_contig1066:16651..17175Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 16652..17175 -
1622815605.3860521-CDS-S-firma_F_contig1066:17594..176251622815605.3860521-CDS-S-firma_F_contig1066:17594..17625Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 17595..17625 -
1696949448.881714-CDS-S-firma_F_contig1066:17594..176251696949448.881714-CDS-S-firma_F_contig1066:17594..17625Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 17595..17625 -
1622815605.408018-CDS-S-firma_F_contig1066:17939..180631622815605.408018-CDS-S-firma_F_contig1066:17939..18063Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 17940..18063 -
1696949448.8961241-CDS-S-firma_F_contig1066:17939..180631696949448.8961241-CDS-S-firma_F_contig1066:17939..18063Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 17940..18063 -
1622815605.4228995-CDS-S-firma_F_contig1066:18324..184091622815605.4228995-CDS-S-firma_F_contig1066:18324..18409Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 18325..18409 -
1696949448.9065754-CDS-S-firma_F_contig1066:18324..184091696949448.9065754-CDS-S-firma_F_contig1066:18324..18409Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 18325..18409 -
1622815605.4357314-CDS-S-firma_F_contig1066:18896..192211622815605.4357314-CDS-S-firma_F_contig1066:18896..19221Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 18897..19221 -
1696949448.9194736-CDS-S-firma_F_contig1066:18896..192211696949448.9194736-CDS-S-firma_F_contig1066:18896..19221Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 18897..19221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1066.896.1

>prot_S-firma_F_contig1066.896.1 ID=prot_S-firma_F_contig1066.896.1|Name=mRNA_S-firma_F_contig1066.896.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=363bp
STVTSAITTGRALALLGTLSVIAHLPFCSVGLGSTMEAFLLKGSSTTPRT
DPVRGDKAAAATLLYNPQPRQRFVFPNHNDNKHGSERKKGPPLGGGGASG
YKQYRSSKLLEQAPKEASKLFTGMSFYFNGRSGDKQTMHLKGAVSKHGGR
TTPFMSMKGVTHVIAENLSAVKTDKAMKQSLKMKVVHPDWLNRCIAEGKL
LSDVPFRVVRSQKLGMGNFFGSSASSSTPASASNGQHNSNQKENKKEETP
RRRRSSLGSSSSSGLSISREARHEEDRRGSRSRGRGLEGVQGSGSYVAGP
ARAAAVKSSNGRGDSRSRGRDVGLSTSKDTSQSRETSKKRARTSSSRAGD
GIRSQCSTSMYER
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mRNA from alignment at S-firma_F_contig1066:16651..19221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1066.896.1 ID=mRNA_S-firma_F_contig1066.896.1|Name=mRNA_S-firma_F_contig1066.896.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2571bp|location=Sequence derived from alignment at S-firma_F_contig1066:16651..19221- (Sphaerotrichia firma ET2_F female)
AGCACGGTAACATCCGCGATAACGACAGGGAGGGCTCTTGCTCTGCTTGG
CACTCTCTCCGTCATCGCTCATCTGCCATTCTGCAGTGTGGGATTAGGGT
CAACGATGGAGGCGTTCTTGCTGAAGGGTTCATCAACAACACCGCGGACA
GACCCTGTCAGAGGAGATAAAGCAGCAGCGGCGACCCTGCTCTACAACCC
CCAGCCGCGTCAACGATTCGTCTTCCCAAACCACAACGACAACAAGCACG
GAAGCGAACGCAAGAAAGGACCACCGCTTGGTGGAGGTGGGGCCTCTGGC
TACAAGCAATATCGGTCTTCCAAACGTGAGAGACATTCGGTCATTCGTAC
CAAAACCCTCCAACGGCTGAATTCGGGTCGGCTCGTTGGTAACCTGCTAG
ATACCATACAAGCGTCGTGCTCTCTTTCCACGTGTGGTCGGCTTGTACCA
CGAAGCGTGAGCATCGACGAATGTGCATGGCATGGATTTTGAGCAAGACA
GGTTCTGAGTTAAAACAAGCCGCGGCGGGCACGTAGGCACGCTGGGTCCT
GGCGCTATAGCTAGTGTGTACTTTCGTTACGTCAGTTTGGTTTGTAACGC
GAATTTGAATGGAGCACCCTGCCTAGCGATGTCTACTATAGTCTAATAGT
CCTCTTCTCACTTACTTTTTCTCACAAACAAGGGTAAACGCCCAGTAGAG
CGGATTGTTGAATGATCACGTCCAGACCTCCACTACCGCTACATACATAC
GACATTTACAAAATAGCACTGCTGTCGTCCTTTCGTACGCATCATCGCAC
GCACGACCCCAGTCTTAGAGCAGGCACCAAAGGAGGCCTCCAAGCTTTTC
ACCGGCATGAGCTTCTACTTCAATGGGCGGAGCGGCGACAAGCAGACGTG
AGAGTTGTGTGCTGAGCGCGGAGTCTGGGATGGAGAAGTCTACGTCTCTT
TTTTTCGCACATGTATTCAATCAAGTCCTGATGCTCCACCCTTGCATTCT
GTCTCCCGCTTTCCCCCTCCGGCTCAAAACCAGGCCTCTTCTCTCTCTCT
CGTTCGTGGGTTCAATCTAAACTGTCTTTCTGAAACTACAGTGCCCTGTC
TTTTGGTTCTTGCGTGCGTCCAATTTGTTGTTCGTGCTTTCGGCTGATAC
CGCTGCAGAATGCACCTCAAGGGTGCCGTGAGCAAGCATGGAGGCCGTAC
CACGCCTTTCATGTCGATGAAGGGAGTGACTCACGTCATCGCGGAGAACC
TAAGCGCAGTCAAGACCGACAAGGCCATGAAGGTGCATCCCAGTTGTGGA
CTCAAGCCTCTCCGCGGAATACGGTACCCCCCGACCTAGCTCTTAGCTAA
CCCCACGTTCTCTGTTGTCACGAAAACGTGGCTTGCTCTGCTCGGTTCCC
AGCGTGTTTCAGAATATGTGTGTCACTTTGCTAGACTAAGTACAACAGCT
GAAGTCCAATATATATGGTAGAGAGCCAGGGTCATACTTTTAACAAAACC
ACCTTTCGCTCCCTTCCGCGCGCCGCAAATGTTTGCTCCAACGCCCGCGG
TGTACTATTTATTCCCTGCCGGGCGACCGCATCTACCAAAACACAGCAGT
CGCTCAAGATGAAGGTCGTGCATCCAGGTAAGGTTCCCCCCCGCGGTACT
GCTGTGCTGTCTGTCGACGATGTCAGCAGGATGAAAAGTCGACTTTCCCA
GCAATGCTGACATGGATGGGGGGTTGGACAGCGAGAGAACAAGTCTTGTT
GGAGCGAACAGCGTGTGCGCCTTTCGGATTTTACCTCGGACTCTGCCACA
CGGCAAAAATCTCCGGCAGTTTTCCTTCTTTGTCAACAGGTGTCCGACTC
GAGGTTCTCGACCTGCCTCCCCACCGCCGTAGTGCTAGCCGCGAGCTGCT
ATTCGTCCACGCCGCCATCCACAATTCGTCCGTCCTTGCCACTCAGTCGG
CCGGTGATTTGAGGTGTGAACCGCCACAAACCTCATCGTGCGTCCGCCCG
CCCCACACACATCATCCGCCGCGATCATTGCAACGCTCCTGGGCAGACTG
GCTAAACCGATGCATCGCGGAGGGAAAGCTTCTCTCGGACGTGCCTTTTC
GCGTCGTCCGCAGCCAAAAGCTAGGGATGGGAAACTTCTTTGGGTCGTCG
GCGTCGTCGTCTACGCCTGCTTCCGCTTCAAACGGCCAGCACAACAGCAA
CCAGAAAGAGAACAAGAAAGAGGAGACACCAAGGAGGCGCCGATCTTCTT
TGGGAAGTTCGTCTTCTTCGGGGTTGAGTATCAGTCGCGAGGCAAGACAC
GAAGAGGATCGGAGAGGGAGTCGGAGTCGAGGAAGGGGGCTTGAGGGAGT
ACAAGGCAGCGGGAGTTATGTCGCGGGTCCGGCGCGTGCGGCGGCAGTGA
AGTCGAGCAATGGGCGCGGAGATAGTAGAAGTCGTGGGCGCGATGTCGGG
CTTTCGACAAGCAAAGACACCAGCCAGAGCAGGGAAACCAGCAAGAAAAG
GGCTAGGACTAGCAGCAGCCGTGCTGGCGATGGCATTCGCAGCCAATGCT
CCACATCCATGTACGAACGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1066:16651..19221-

>mRNA_S-firma_F_contig1066.896.1 ID=mRNA_S-firma_F_contig1066.896.1|Name=mRNA_S-firma_F_contig1066.896.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2178bp|location=Sequence derived from alignment at S-firma_F_contig1066:16651..19221- (Sphaerotrichia firma ET2_F female)
AGCACGGTAACATCCGCGATAACGACAGGGAGGGCTCTTGCTCTGCTTGG
CACTCTCTCCGTCATCGCTCATCTGCCATTCTGCAGTGTGGGATTAGGGT
CAACGATGGAGGCGTTCTTGCTGAAGGGTTCATCAACAACACCGCGGACA
GACCCTGTCAGAGGAGATAAAGCAGCAGCGGCGACCCTGCTCTACAACCC
CCAGCCGCGTCAACGATTCGTCTTCCCAAACCACAACGACAACAAGCACG
GAAGCGAACGCAAGAAAGGACCACCGCTTGGTGGAGGTGGGGCCTCTGGC
TACAAGCAATATCGGTCTTCCAAACAGCACGGTAACATCCGCGATAACGA
CAGGGAGGGCTCTTGCTCTGCTTGGCACTCTCTCCGTCATCGCTCATCTG
CCATTCTGCAGTGTGGGATTAGGGTCAACGATGGAGGCGTTCTTGCTGAA
GGGTTCATCAACAACACCGCGGACAGACCCTGTCAGAGGAGATAAAGCAG
CAGCGGCGACCCTGCTCTACAACCCCCAGCCGCGTCAACGATTCGTCTTC
CCAAACCACAACGACAACAAGCACGGAAGCGAACGCAAGAAAGGACCACC
GCTTGGTGGAGGTGGGGCCTCTGGCTACAAGCAATATCGGTCTTCCAAAC
TCTTAGAGCAGGCACCAAAGGAGGCCTCCAAGCTTTTCACCGGCATGAGC
TTCTACTTCAATGGGCGGAGCGGCGACAAGCAGACTCTTAGAGCAGGCAC
CAAAGGAGGCCTCCAAGCTTTTCACCGGCATGAGCTTCTACTTCAATGGG
CGGAGCGGCGACAAGCAGACAATGCACCTCAAGGGTGCCGTGAGCAAGCA
TGGAGGCCGTACCACGCCTTTCATGTCGATGAAGGGAGTGACTCACGTCA
TCGCGGAGAACCTAAGCGCAGTCAAGACCGACAAGGCCATGAAGAATGCA
CCTCAAGGGTGCCGTGAGCAAGCATGGAGGCCGTACCACGCCTTTCATGT
CGATGAAGGGAGTGACTCACGTCATCGCGGAGAACCTAAGCGCAGTCAAG
ACCGACAAGGCCATGAAGCAGTCGCTCAAGATGAAGGTCGTGCATCCAGC
AGTCGCTCAAGATGAAGGTCGTGCATCCAGACTGGCTAAACCGATGCATC
GCGGAGGGAAAGCTTCTCTCGGACGTGCCTTTTCGCGTCGTCCGCAGCCA
AAAGCTAGGGATGGGAAACTTCTTTGGGTCGTCGGCGTCGTCGTCTACGC
CTGCTTCCGCTTCAAACGGCCAGCACAACAGCAACCAGAAAGAGAACAAG
AAAGAGGAGACACCAAGGAGGCGCCGATCTTCTTTGGGAAGTTCGTCTTC
TTCGGGGTTGAGTATCAGTCGCGAGGCAAGACACGAAGAGGATCGGAGAG
GGAGTCGGAGTCGAGGAAGGGGGCTTGAGGGAGTACAAGGCAGCGGGAGT
TATGTCGCGGGTCCGGCGCGTGCGGCGGCAGTGAAGTCGAGCAATGGGCG
CGGAGATAGTAGAAGTCGTGGGCGCGATGTCGGGCTTTCGACAAGCAAAG
ACACCAGCCAGAGCAGGGAAACCAGCAAGAAAAGGGCTAGGACTAGCAGC
AGCCGTGCTGGCGATGGCATTCGCAGCCAATGCTCCACATCCATGTACGA
ACGGACTGGCTAAACCGATGCATCGCGGAGGGAAAGCTTCTCTCGGACGT
GCCTTTTCGCGTCGTCCGCAGCCAAAAGCTAGGGATGGGAAACTTCTTTG
GGTCGTCGGCGTCGTCGTCTACGCCTGCTTCCGCTTCAAACGGCCAGCAC
AACAGCAACCAGAAAGAGAACAAGAAAGAGGAGACACCAAGGAGGCGCCG
ATCTTCTTTGGGAAGTTCGTCTTCTTCGGGGTTGAGTATCAGTCGCGAGG
CAAGACACGAAGAGGATCGGAGAGGGAGTCGGAGTCGAGGAAGGGGGCTT
GAGGGAGTACAAGGCAGCGGGAGTTATGTCGCGGGTCCGGCGCGTGCGGC
GGCAGTGAAGTCGAGCAATGGGCGCGGAGATAGTAGAAGTCGTGGGCGCG
ATGTCGGGCTTTCGACAAGCAAAGACACCAGCCAGAGCAGGGAAACCAGC
AAGAAAAGGGCTAGGACTAGCAGCAGCCGTGCTGGCGATGGCATTCGCAG
CCAATGCTCCACATCCATGTACGAACGG
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