mRNA_S-firma_F_contig1066.894.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1066.894.1
Unique NamemRNA_S-firma_F_contig1066.894.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1066.894.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 2.020e-73
Identity = 142/216 (65.74%), Postives = 158/216 (73.15%), Query Frame = 3 
Query:  447 MVAAATDAGKRVPPT----GGAEATAKDGASRLPPT--EDKLLLACCRAIKKESGWQERTLRQACDWATGELERNQYPGAGLGRYYRVVELAMESNSEDVVETALGQLHKLVAGGLVRRRTMTTLKDGGSANLAEVLVGVVLRTGSKDKTVRRGGRAQAVRCLLSCVSSPEIQVHGEELRRAFAFVHETFLAIDSTANRAKYNKAQARATLDHILQ 1076
            MV AA +AG   PPT    G   +   D ++  PP+  EDKLLLA CR I+KE+GWQERTLRQACDWATGELE+NQ+PG G+ RYYRVVELAM S SEDVVE ALGQLHKL+AGGLVRR TMTTLKDG SANL E+LVGVV+ TGS+DKTV                       HGEELR+   FVHETFL IDSTANRA+YNKAQARATLDHILQ
Sbjct:    1 MVVAA-EAGVHPPPTESDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWATGELEQNQHPGVGMARYYRVVELAMGSKSEDVVEAALGQLHKLIAGGLVRRNTMTTLKDGSSANLGEILVGVVMETGSRDKTV-----------------------HGEELRKVALFVHETFLVIDSTANRARYNKAQARATLDHILQ 192
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BLAST of mRNA_S-firma_F_contig1066.894.1 vs. uniprot
Match: A0A6H5KGZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.790e-11
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 3 
Query:  447 MVAAATDAGKRVPPT----GGAEATAKDGASRLPPT--EDKLLLACCRAIKKESGWQERTLRQACDWATG 638
            MV AA +AG   PPT    G   +   D ++  PP+  EDKLLLA CR I+KE+GWQERTLRQACDWATG
Sbjct:    1 MVVAA-EAGVHPPPTESDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWATG 69
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1066.894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFA1_ECTSI2.020e-7365.74BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
A0A6H5KGZ2_9PHAE1.790e-1158.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1066contigS-firma_F_contig1066:818..4311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LFA1
PFAMsDCB,DUF1981,Sec7,Sec7_N
Max annot lvl2759|Eukaryota
KEGG koko:K18442
KEGG Pathwayko04144,map04144
Evalue1.57e-76
EggNOG OGsCOG5307@1|root,KOG0929@2759|Eukaryota
Descriptionregulation of ARF protein signal transduction
COG categoryK
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size1076
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1066.894.1prot_S-firma_F_contig1066.894.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1066 818..3865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.028884-CDS-S-firma_F_contig1066:817..9461622815605.028884-CDS-S-firma_F_contig1066:817..946Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 818..946 -
1696949448.5719526-CDS-S-firma_F_contig1066:817..9461696949448.5719526-CDS-S-firma_F_contig1066:817..946Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 818..946 -
1622815605.039355-CDS-S-firma_F_contig1066:1377..15591622815605.039355-CDS-S-firma_F_contig1066:1377..1559Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 1378..1559 -
1696949448.5912228-CDS-S-firma_F_contig1066:1377..15591696949448.5912228-CDS-S-firma_F_contig1066:1377..1559Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 1378..1559 -
1622815605.0507884-CDS-S-firma_F_contig1066:2358..24871622815605.0507884-CDS-S-firma_F_contig1066:2358..2487Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 2359..2487 -
1696949448.6047318-CDS-S-firma_F_contig1066:2358..24871696949448.6047318-CDS-S-firma_F_contig1066:2358..2487Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 2359..2487 -
1622815605.063237-CDS-S-firma_F_contig1066:3675..38651622815605.063237-CDS-S-firma_F_contig1066:3675..3865Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 3676..3865 -
1696949448.6199973-CDS-S-firma_F_contig1066:3675..38651696949448.6199973-CDS-S-firma_F_contig1066:3675..3865Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1066 3676..3865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.073742-UTR-S-firma_F_contig1066:3865..43111622815605.073742-UTR-S-firma_F_contig1066:3865..4311Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1066 3866..4311 -
1696949448.6313899-UTR-S-firma_F_contig1066:3865..43111696949448.6313899-UTR-S-firma_F_contig1066:3865..4311Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1066 3866..4311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1066.894.1

>prot_S-firma_F_contig1066.894.1 ID=prot_S-firma_F_contig1066.894.1|Name=mRNA_S-firma_F_contig1066.894.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=210bp
MVAAATDAGKRVPPTGGAEATAKDGASRLPPTEDKLLLACCRAIKKESGW
QERTLRQACDWATGELERNQYPGAGLGRYYRVVELAMESNSEDVVETALG
QLHKLVAGGLVRRRTMTTLKDGGSANLAEVLVGVVLRTGSKDKTVRRGGR
AQAVRCLLSCVSSPEIQVHGEELRRAFAFVHETFLAIDSTANRAKYNKAQ
ARATLDHILQ
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mRNA from alignment at S-firma_F_contig1066:818..4311-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1066.894.1 ID=mRNA_S-firma_F_contig1066.894.1|Name=mRNA_S-firma_F_contig1066.894.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3494bp|location=Sequence derived from alignment at S-firma_F_contig1066:818..4311- (Sphaerotrichia firma ET2_F female)
GCATATCTCTCCAGCAAGAGCAGGGGCGCTAGAACGAGGGAGAGCGAGGG
CAATCGAAGCAGTGCGTCTGTGGATGCGGGCAAAAGCAAGGAGTTGGGGC
GCAACGACAGAATTCCATCGCGAAGTGTGTGAGCGCAGGCAATAAATTCG
GAGTACATCAACCTGAGTGCGGCCGGCTTCTGTGCTCGCGCGGTGGGAGA
GAGAGCGCAAAGTGTGGCATCGGTTGGGCACTGGTGAGCCCTACGTGCCC
GGGCAGATGAGTACATAGCACTGGCGAAAGGAGGAGAAGGCCGTTGCCTT
GCAGCAAGCAGCCTGGAGCACACGGGATATGTCTCTGGCTGGTTGCAGAA
CATTCCCTCTCAAGGTAAGAACACCGAAGCAACGAAGCAACACCCGCCGC
AGGCGGGCCAGAGAACCTTCAAGCGCGTCCTGTAAGAAGTGACCCAATGG
TGGCAGCAGCTACCGATGCGGGAAAGCGGGTCCCGCCGACAGGGGGGGCG
GAAGCAACCGCCAAGGACGGTGCCAGCAGGCTGCCGCCCACGGAGGACAA
GCTGCTCCTGGCATGTTGTCGAGCCATCAAGAAGGAATCAGGCTGGCAGG
AACGGACGCTGCGGCAAGCGTGCGACTGGGCCACAGGTGTGTCCAGCCGA
GAGGGGCACCGCCGTGAAGGGTACGGGGTGTAGACTAGGCCCTCAGGCAT
CAGCAAGTTCCTTTGCCGTGAGGCTGCTGCTGGGTCGGCTTCTCCCTCCC
GTAGCCCGGTTTTGGCATCTAGCCTCTCTGCTGTGCACATGGAGATGGGG
TGTCAACGCGTGCACGAAAAGCCGATGCCGTTTGGGGTCACGGAGGAACG
GCTGGGACTGTCGAACTGCGAGCGCATACACTCGGCCCTCGGCACAGCTA
CCTACCACCACCATTTCCTACCACAGCCGGAGTGCTGGACTACCAAAGAC
GAGGAGGCGTAGATATTCCTTTCGTATTAGTCCGTATTTTACACACGGCC
ACCCTCTAGACTATTCCTTTGGCATGACTGAGTGATCTACGTAGATTTCA
CCCACCCCCGGATCGCGCTCGATTTACTCCGCACCTGAAGAGAGCGACTC
TGTCGATCGATGTTGTCGAGGGTAGTAGTGCATTTGGGAAAGCTGGGTTT
TCCTCTCCAAAGTCCAGTACACTGCTGGGGCTTTTTGCCTTGCACTGCTG
TGTTGTTGACATGCACATCAATGCGTATTTTTTTCATGTTCAAGTCAACT
TTCCAGTAATTTAGCGTATCTAACTAACATGCGTGCGTGTCTTGGACGTT
TCGTCGACGTGCATATATCCATATCATACGTCAGACAGACCTCTTTGTGG
CGTGAAAGAACAGTAGCCACCATCCACTACTGCTGTGGAGAAACCCCAAC
AAGCAGGGCTTCTGCGTTATTGCAGCCGTCTGGACGTCCGAAAACTACCG
AAAACGCCAAGCGGCTGGCTCACGCCGCCACCCGTTGGCGTTTCCCAATT
TTTTTATTTATTTATTTCTCCCATTAGTGTTTCTGTCGACTGCCCCACTG
GCCCCCATCCTCCACTACGACTGGTTCCCCAAATGCACCCCCGCGTTTCG
GAGCGGGAGGTCAGCCGTTCGTTCCCTCATAGAATACTCCACGTGCATCG
CCTCGTCTCGTCGTCTCCTCTCTTGCTTTCGAGACTTGAACAACATTGAA
CGAAACGAAACTGCCTGCTTTTGTAGTGGTCGAACATGTTTGCACCTTTT
TACACGCCCCAGTGTAAGCGGTGTGCCATCGCTGCTGCTCTCCCTCGCGA
AACGTTGTGTTTTTTTTTGGTCAGGCGAGCTCGAGCGAAATCAGTATCCC
GGGGCCGGGCTCGGCAGGTACTACCGGGTGGTGGAGCTCGCGATGGAATC
AAACTCGGAGGATGTCGTGGAAACGGCCTTGGGCCAGCTGCACAAGCTTG
TCGGTGAGTGAGTGCTCGCTCGCTGCGTCCACGTGTGAGAGACACACGGC
GGTGTTGCCGAGCTCCGGCCGTGGTGGTGAGGGTTTCAATTCGAAGTTGG
CGTTTCGTGTCGTGTCGGTTCCGTTCGTGACGGCTAAGTAGCCGTTGGCG
GGCAGAGAGCGTGCTCGCCTCGCAGTTGATCGGCGATCCTTCCTTTCAGT
GGGGCGGTGTATGTATTTGCGCGAATAGCGGGGGTACTGCTGTATCGTTT
TTGTTTTGTTTTTTTCGGCCGTGGGGGTGTGCCACTCGCGATTTGCTCGC
GCAAGCTGTATTCGGCTTTTAATAGCGTGTTGGTGTTGCTCGGAAAAAAA
AGGCAGCCAGCCTCGTCGTCGGCGGCTTTCGCGCGCGCACCAAAAATAAA
AAATAGCCTTCGGTGTAACTCGCTTGCGGCCCTTCTCTTCGACGGACAGC
GCCATCCCCCCCCCCCCGCGCTCCAGCGCGTGCGTAGGGACCCCAAGTGC
AGCTACCCCCGCCTGCCCCCGGTGTCCTTGGCTCCTCCCTTCCGACCCCG
TGCACACTCCGCCTCTCCTCAGCGCGAGAACCAACCGTGTGCGCTTCTTT
CTTTAAACAGATTTAAATTCGTTCCAGGGGGACTGTTGTATTGTATACAC
ACTACACCCCCATCCCCGTTCCACAGCCAACAGCTCAAAATCCGCAATCC
GTTAGTTTTTTTTCTGTTTTTTTTTTTTTTTCCCCGCCGATCGAAACGTT
CATGAAACCCACATACCCTAATCCTTTCTGCTTTCCCAAACCAACCAACC
AGCGGGGGGCCTGGTCAGAAGGCGCACCATGACCACTCTCAAGGACGGGG
GCTCCGCCAACCTCGCCGAGGTCTTGGTGGGGGTCGTGCTGCGGACGGGG
TCGAAGGACAAGACCGTGAGGCGGGGCGGCCGGGCGCAGGCCGTCCGGTG
CCTCCTGTCGTGCGTGTCTTCTCCGGAGATTCAGGCGAGACAGGCAGACG
AGAGAGACAGCGATCGAGAGAGGGGGGACAGGCAGACAGGAGAGGCAGCG
ATCGAGAGAGGGGGGGGGGAGGGTGGGGGCGGAGGGAGGAGAAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGAGAAAACAAAACGAAAAAAAATCGGGAGT
TCATCGTCCGCCTCTACTACCTGTGCTAGATGGTGGTCGTGGCAATGGTC
GTGGTGGCAGGGGGCGACGCACGTGGAATCATGGACAGAGATACGAACGT
GCACGCTTTTGGGCCTGTCCGTGTGGACACGTTAGCCCGCTCCCCCCCCC
CCCCGCCGACGCCGCCGCCGCCACTCTGATGCTACTGTCTGTAGGTTCCC
CCCCCTTTTTATTACTGCCTCCTATGTATATACGGTAAATTGCGCTTTCG
TCGTCGCGTCGGCAGGTGCACGGGGAGGAGCTGCGCCGCGCGTTCGCGTT
CGTCCACGAGACCTTTCTCGCCATCGACTCCACCGCCAACAGGGCCAAGT
ACAACAAGGCGCAGGCCCGGGCTACCCTGGACCACATTTTGCAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1066:818..4311-

>mRNA_S-firma_F_contig1066.894.1 ID=mRNA_S-firma_F_contig1066.894.1|Name=mRNA_S-firma_F_contig1066.894.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1260bp|location=Sequence derived from alignment at S-firma_F_contig1066:818..4311- (Sphaerotrichia firma ET2_F female)
ATGGTGGCAGCAGCTACCGATGCGGGAAAGCGGGTCCCGCCGACAGGGGG
GGCGGAAGCAACCGCCAAGGACGGTGCCAGCAGGCTGCCGCCCACGGAGG
ACAAGCTGCTCCTGGCATGTTGTCGAGCCATCAAGAAGGAATCAGGCTGG
CAGGAACGGACGCTGCGGCAAGCGTGCGACTGGGCCACAGATGGTGGCAG
CAGCTACCGATGCGGGAAAGCGGGTCCCGCCGACAGGGGGGGCGGAAGCA
ACCGCCAAGGACGGTGCCAGCAGGCTGCCGCCCACGGAGGACAAGCTGCT
CCTGGCATGTTGTCGAGCCATCAAGAAGGAATCAGGCTGGCAGGAACGGA
CGCTGCGGCAAGCGTGCGACTGGGCCACAGGCGAGCTCGAGCGAAATCAG
TATCCCGGGGCCGGGCTCGGCAGGTACTACCGGGTGGTGGAGCTCGCGAT
GGAATCAAACTCGGAGGATGTCGTGGAAACGGCCTTGGGCCAGCTGCACA
AGCTTGTCGGCGAGCTCGAGCGAAATCAGTATCCCGGGGCCGGGCTCGGC
AGGTACTACCGGGTGGTGGAGCTCGCGATGGAATCAAACTCGGAGGATGT
CGTGGAAACGGCCTTGGGCCAGCTGCACAAGCTTGTCGCGGGGGGCCTGG
TCAGAAGGCGCACCATGACCACTCTCAAGGACGGGGGCTCCGCCAACCTC
GCCGAGGTCTTGGTGGGGGTCGTGCTGCGGACGGGGTCGAAGGACAAGAC
CGTGAGGCGGGGCGGCCGGGCGCAGGCCGTCCGGTGCCTCCTGTCGTGCG
TGTCTTCTCCGGAGATTCAGCGGGGGGCCTGGTCAGAAGGCGCACCATGA
CCACTCTCAAGGACGGGGGCTCCGCCAACCTCGCCGAGGTCTTGGTGGGG
GTCGTGCTGCGGACGGGGTCGAAGGACAAGACCGTGAGGCGGGGCGGCCG
GGCGCAGGCCGTCCGGTGCCTCCTGTCGTGCGTGTCTTCTCCGGAGATTC
AGGTGCACGGGGAGGAGCTGCGCCGCGCGTTCGCGTTCGTCCACGAGACC
TTTCTCGCCATCGACTCCACCGCCAACAGGGCCAAGTACAACAAGGCGCA
GGCCCGGGCTACCCTGGACCACATTTTGCAGGTGCACGGGGAGGAGCTGC
GCCGCGCGTTCGCGTTCGTCCACGAGACCTTTCTCGCCATCGACTCCACC
GCCAACAGGGCCAAGTACAACAAGGCGCAGGCCCGGGCTACCCTGGACCA
CATTTTGCAG
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