mRNA_S-firma_F_contig10656.889.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10656.889.1
Unique NamemRNA_S-firma_F_contig10656.889.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10656.889.1 vs. uniprot
Match: A0A6H5KG81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG81_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 1.420e-97
Identity = 140/169 (82.84%), Postives = 151/169 (89.35%), Query Frame = 1 
Query:    1 FSKAIQARPGDASLYWGRSHAWERAGNRRQAVVDAGVGVCLRPRVAAGFDRLSAAYEAQGRHAEVVRACFLGMRCGDTSKNSTLGRRMSRAREAGELPPLDWTPIDRRERWVWAFLSFRGFLLRVAAGVAWRLRLGGAGLALGACAGGEGFVRPPWPRGAMPPALLLAP 507
            FSKAI+ RP DASLYWGRS +WERAGN R+AVVDAGVGVCLRPRVAAGF RLSA +EAQGRHA+VVRACFLGMRCGD+SKN  LGRRMS AREAG+LPPLDWTP DRRERW WAFLSFRGFLLR+AAG+A RLR+GGAGLALGAC GG+G   PPWPRGAMPP LL AP
Sbjct:   40 FSKAIRLRPADASLYWGRSQSWERAGNPRKAVVDAGVGVCLRPRVAAGFARLSATFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGLALGACEGGQGLSSPPWPRGAMPPVLLEAP 208
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BLAST of mRNA_S-firma_F_contig10656.889.1 vs. uniprot
Match: D7G7K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K5_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 5.960e-83
Identity = 122/145 (84.14%), Postives = 132/145 (91.03%), Query Frame = 1 
Query:   73 AGNRRQAVVDAGVGVCLRPRVAAGFDRLSAAYEAQGRHAEVVRACFLGMRCGDTSKNSTLGRRMSRAREAGELPPLDWTPIDRRERWVWAFLSFRGFLLRVAAGVAWRLRLGGAGLALGACAGGEGFVRPPWPRGAMPPALLLAP 507
            AGN R+AVVDAGVGVCLRPRVAAGF RLSA++EAQGRHA+VVRACFLGMRCGD+SKN  LGRRMS AREAG+LPPLDWTP DRRERW WAFLSFRGFLLR+AAG+A RLR+GGAGLAL ACAGG+GF  PPWPRGAMPP LL AP
Sbjct:    2 AGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGLALAACAGGQGFSSPPWPRGAMPPVLLEAP 146
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10656.889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG81_9PHAE1.420e-9782.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K5_ECTSI5.960e-8384.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10656contigS-firma_F_contig10656:525..3270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_002070.1
Exons3
Model size518
Cds size516
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10656.889.1prot_S-firma_F_contig10656.889.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10656 525..3270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.6149206-CDS-S-firma_F_contig10656:524..7111622815604.6149206-CDS-S-firma_F_contig10656:524..711Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10656 525..711 -
1696949448.2930899-CDS-S-firma_F_contig10656:524..7111696949448.2930899-CDS-S-firma_F_contig10656:524..711Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10656 525..711 -
1622815604.6258023-CDS-S-firma_F_contig10656:1330..14461622815604.6258023-CDS-S-firma_F_contig10656:1330..1446Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10656 1331..1446 -
1696949448.3036065-CDS-S-firma_F_contig10656:1330..14461696949448.3036065-CDS-S-firma_F_contig10656:1330..1446Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10656 1331..1446 -
1622815604.642349-CDS-S-firma_F_contig10656:3057..32701622815604.642349-CDS-S-firma_F_contig10656:3057..3270Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10656 3058..3270 -
1696949448.3140526-CDS-S-firma_F_contig10656:3057..32701696949448.3140526-CDS-S-firma_F_contig10656:3057..3270Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10656 3058..3270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10656.889.1

>prot_S-firma_F_contig10656.889.1 ID=prot_S-firma_F_contig10656.889.1|Name=mRNA_S-firma_F_contig10656.889.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=172bp
FSKAIQARPGDASLYWGRSHAWERAGNRRQAVVDAGVGVCLRPRVAAGFD
RLSAAYEAQGRHAEVVRACFLGMRCGDTSKNSTLGRRMSRAREAGELPPL
DWTPIDRRERWVWAFLSFRGFLLRVAAGVAWRLRLGGAGLALGACAGGEG
FVRPPWPRGAMPPALLLAPQG*
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mRNA from alignment at S-firma_F_contig10656:525..3270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10656.889.1 ID=mRNA_S-firma_F_contig10656.889.1|Name=mRNA_S-firma_F_contig10656.889.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2746bp|location=Sequence derived from alignment at S-firma_F_contig10656:525..3270- (Sphaerotrichia firma ET2_F female)
TTCAGCAAAGCCATCCAGGCAAGACCCGGAGACGCCTCGCTCTACTGGGG
GAGGTCCCACGCGTGGGAGAGGGCGGGGAATCGTCGCCAGGCCGTGGTGG
ACGCCGGGGTTGGGGTGTGCCTGCGGCCGAGGGTGGCGGCGGGCTTCGAC
AGGCTCTCCGCGGCTTACGAGGCGCAGGGACGGCACGCTGAGGTCGTCCG
AGCTTGTTTCTTGGTGAGCGAATAAGGCGGGAGTTCGGCCAATTGGAGCG
ACGAGTAGTTGGAGAAATTCGCGTGCATGTTTGAACGCTGTCAGATGGGC
TGATTGCATTACCTGTAAATAAGGAGCGTGGCGATATGGGTGGCACCGCC
GGCTGTGTTGTGCTCACGATTGTTTGGGACTCAACCATGAAGTACCCTTG
TACGACTGTTAGGAGGGTTTTGGGCGCCACTCTTTACCCACACTCCTCAA
GAAAGGCAAAGGACAACATGGAATTTTCAATATGGGTTTCCGACAAACCC
GATTAACCGCGAAACGAACGGAGACGAACGAAGGAACCTTATCTTCATCT
TGCATTGTTTCCTTAACCGCAATATCTTTGGTGTTGATGGCATGGCGTTC
GGGTATGCCTCGACTTGTGGCAGTTCTTGTCTCGAGTGTCTGGCTTCGTC
GTCGGCTTAAGTACGTCCTGTTTACCGTTTCACGCACGTACCTGTCATCG
TCATCTGGCTGTGTTGGGATCGCACGGAACGACCGTCCCGACACGTATTG
CGCGTTTGGCTGAGGTTTTTCCGCGGTCTGTGCTCGATTTTTCTGCACCC
CCCCCTCGCTCCTCTTTGTTGCATTCGCTTGCTTTTGCAGTTAAGGGGGC
GGGATGACAAACGCTTTTTTGGGATGCGGGCGGTTTTGAAAATACCCGGA
AAAGCATACAAGTATAATTTAAAAATCACACAGCACATCTATCGGGCCAG
TAGGGAAGTTGGGCGTCTCGCCCGGAAAACGTTCAAAGGTCCTTCTCGCA
AAGCTAGCCACCAAGCCAATGCATGATATGCCTCGCCTTCGTGCAGCATC
GCAGATAAGCCACTGTCAGGTGTTAAGCCGGTGCTATTGTGCGGCTCGTT
GTCCTGACCCCGCTAGTATCTGCTGTGGGGCAGGAGTCGTCCGGAGTCGC
AACATAATTTTGCTCCAGAAATCCGCAGTCTGGACCGACACCGAACATCT
TCCACTGCTGCTGCGCTCGGCACGACAAACCCGAACCTCCCCAGCTACGG
GTCCACAGCAGTGGTAGCTCATGTCACTAAGTCGCTACCGTGGGTGAGCC
GCAGCCGCGACAAACGCTTGTTTTCGGTCCAGATTGCGGACTTTTGGAGC
TAGGTGCTGCAGCCCTCGATATCCCCGCCCTGCAGAAGATTCTAGCATGC
GCATCTCACCCCCTCTATGTTGTCCCCTGATGACGTCGCTCTTCGAGGTG
CAGAACCTACTGCGGGAAGGTCGTGTTCGTGTGGGCATCTTGGATTTTGA
CAAAAAAAAACGTTCCTCGCCGTTGTTCCCGTCCTAAAACTTGAGAACGA
AAGAGTTTGGTGTACTGCTGTTAAAGAAACTCTCTACGAAGATGCCAGCG
GTACACGTCCGACCAGTGGACAAATCGTTCCAGGGGGACTATTGTAGACA
CAATAGGCTAACCCTTTTCTTACCGTCCCAGACTGCCGGCGCAAAATCCG
TAACTGCTGTCTGTACCAATTGTTGAGTACTTTCAAGCTCCACGCCCGTT
TTCGCTTGCCCTCCCCGGCCTGTGTGTCCTTGTTTCCGGTGCGCGCGCGC
TCCCGACCCTAATGCCGTGCACAGGGCATGAGGTGCGGTGACACCAGCAA
AAACAGCACCCTCGGGCGAAGAATGTCCAGGGCCAGGGAGGCTGGCGAGC
TCCCGCCGCTCGATTGGACACCAATAGACAGACGCGAGAGGTACGTACTG
CTCTGATAGACGCGAGAGAGCTGATGCGTGGTTTTATTGGGGTGTTTAGC
TGCTTCGCGCGTCTTGCGGCCTGAATATGTGTGTTCTGCACCGCTCGTGT
CCGTGTTGTGTGTCAGGTGCTATCTACGTTGCGGCTGTCACGTGCGCCTA
GCGCTCGCCTGCCTGACGTGTTGTGTTGACTCTCTTCTCGCCTTCGGTGC
AGTGTTGTTTGCCTGCCCTCTTCAGCACGCGCGAGCATTCGCTGGTGTCT
GATTGGTGCCGGTTTATGCTACAAGGCATTGTTGACATTGCATTGGCTAC
AAACTACCAAGCCAGCTCTTCGTCTTTGCTGTTCTCCCTCTTCCGCTTGT
TCTTGCGTACTTTTTTTGTTCGTTGAACACGTTGCCTGTTTGTTTTTGTT
CTGTTCACAGCTTCACGTTCAAAACTATAAGCGTTAGAACGACTTTCCTG
CCCAGCACCGTGTTGATCCAGCGCCCGCGGCGCCCAAGGAGCAGGTTGGC
TATCAGATTACCTTCGTTCCCAACCACACGGTCTGCTGCACTGACAACGC
GCTCGGCCCTTCATTCCTCCACAAACTACCTACGAAACCGAACACCCTGC
GACCTGCAGGTGGGTGTGGGCGTTCCTCTCCTTTCGCGGCTTCCTCTTGC
GCGTGGCGGCCGGCGTCGCCTGGCGGCTTCGATTGGGCGGGGCGGGCCTA
GCACTTGGAGCTTGCGCCGGAGGAGAAGGTTTCGTTCGCCCCCCGTGGCC
GAGAGGGGCCATGCCTCCGGCGCTGCTGCTGGCTCCGCAAGGCTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10656:525..3270-

>mRNA_S-firma_F_contig10656.889.1 ID=mRNA_S-firma_F_contig10656.889.1|Name=mRNA_S-firma_F_contig10656.889.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1032bp|location=Sequence derived from alignment at S-firma_F_contig10656:525..3270- (Sphaerotrichia firma ET2_F female)
TTCAGCAAAGCCATCCAGGCAAGACCCGGAGACGCCTCGCTCTACTGGGG
GAGGTCCCACGCGTGGGAGAGGGCGGGGAATCGTCGCCAGGCCGTGGTGG
ACGCCGGGGTTGGGGTGTGCCTGCGGCCGAGGGTGGCGGCGGGCTTCGAC
AGGCTCTCCGCGGCTTACGAGGCGCAGGGACGGCACGCTGAGGTCGTCCG
AGCTTGTTTCTTGTTCAGCAAAGCCATCCAGGCAAGACCCGGAGACGCCT
CGCTCTACTGGGGGAGGTCCCACGCGTGGGAGAGGGCGGGGAATCGTCGC
CAGGCCGTGGTGGACGCCGGGGTTGGGGTGTGCCTGCGGCCGAGGGTGGC
GGCGGGCTTCGACAGGCTCTCCGCGGCTTACGAGGCGCAGGGACGGCACG
CTGAGGTCGTCCGAGCTTGTTTCTTGGGCATGAGGTGCGGTGACACCAGC
AAAAACAGCACCCTCGGGCGAAGAATGTCCAGGGCCAGGGAGGCTGGCGA
GCTCCCGCCGCTCGATTGGACACCAATAGACAGACGCGAGAGGGCATGAG
GTGCGGTGACACCAGCAAAAACAGCACCCTCGGGCGAAGAATGTCCAGGG
CCAGGGAGGCTGGCGAGCTCCCGCCGCTCGATTGGACACCAATAGACAGA
CGCGAGAGGTGGGTGTGGGCGTTCCTCTCCTTTCGCGGCTTCCTCTTGCG
CGTGGCGGCCGGCGTCGCCTGGCGGCTTCGATTGGGCGGGGCGGGCCTAG
CACTTGGAGCTTGCGCCGGAGGAGAAGGTTTCGTTCGCCCCCCGTGGCCG
AGAGGGGCCATGCCTCCGGCGCTGCTGCTGGCTCCGCAAGGCTAGGTGGG
TGTGGGCGTTCCTCTCCTTTCGCGGCTTCCTCTTGCGCGTGGCGGCCGGC
GTCGCCTGGCGGCTTCGATTGGGCGGGGCGGGCCTAGCACTTGGAGCTTG
CGCCGGAGGAGAAGGTTTCGTTCGCCCCCCGTGGCCGAGAGGGGCCATGC
CTCCGGCGCTGCTGCTGGCTCCGCAAGGCTAG
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