mRNA_S-firma_F_contig10655.888.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10655.888.1
Unique NamemRNA_S-firma_F_contig10655.888.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10655.888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10655contigS-firma_F_contig10655:4120..4630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10655.888.1prot_S-firma_F_contig10655.888.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10655 4125..4469 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.4422014-UTR-S-firma_F_contig10655:4119..41241622815604.4422014-UTR-S-firma_F_contig10655:4119..4124Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10655 4120..4124 +
1696949448.1706376-UTR-S-firma_F_contig10655:4119..41241696949448.1706376-UTR-S-firma_F_contig10655:4119..4124Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10655 4120..4124 +
1622815604.4692483-UTR-S-firma_F_contig10655:4469..46301622815604.4692483-UTR-S-firma_F_contig10655:4469..4630Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10655 4470..4630 +
1696949448.1992729-UTR-S-firma_F_contig10655:4469..46301696949448.1992729-UTR-S-firma_F_contig10655:4469..4630Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10655 4470..4630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.4574084-CDS-S-firma_F_contig10655:4124..44691622815604.4574084-CDS-S-firma_F_contig10655:4124..4469Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10655 4125..4469 +
1696949448.1811647-CDS-S-firma_F_contig10655:4124..44691696949448.1811647-CDS-S-firma_F_contig10655:4124..4469Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10655 4125..4469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10655.888.1

>prot_S-firma_F_contig10655.888.1 ID=prot_S-firma_F_contig10655.888.1|Name=mRNA_S-firma_F_contig10655.888.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=115bp
MSNGENNDEKQRTLLRNARKNGLSIPRAWETSWLHQKSAFPFNRTNITSV
MFLLGVKFDWRDSEYSTQLRPSRTISTRGESTLARSFTCCPSLACVCGAK
STCVCRLRYWTVIG*
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mRNA from alignment at S-firma_F_contig10655:4120..4630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10655.888.1 ID=mRNA_S-firma_F_contig10655.888.1|Name=mRNA_S-firma_F_contig10655.888.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=511bp|location=Sequence derived from alignment at S-firma_F_contig10655:4120..4630+ (Sphaerotrichia firma ET2_F female)
TGTAAATGAGCAACGGCGAGAACAATGACGAGAAGCAAAGAACGCTCCTT
CGCAACGCCAGAAAAAACGGCCTGAGCATCCCAAGAGCATGGGAAACAAG
TTGGCTGCATCAAAAGTCTGCATTTCCCTTCAATCGAACTAACATAACAT
CAGTCATGTTCCTGCTTGGCGTCAAATTTGATTGGCGCGACTCTGAGTAC
TCCACACAGCTGCGGCCGTCGCGAACAATTTCGACTCGTGGCGAAAGTAC
TCTCGCTCGGTCGTTTACCTGTTGCCCGAGTCTCGCGTGCGTGTGTGGCG
CGAAGTCTACGTGTGTCTGTAGGCTTAGGTACTGGACGGTGATTGGCTGA
AATCCCGCCGTGGAGCTTTTCTTCGCAATTTTTGTACGAGGCGCCAGAGT
CTTCGCAGGGTAGTCGAACCTGCAGGGTGAGGCCGACTCGCCGCCAGTGG
TCGTGGTAGAGTTGGTGCGACGAGAGTGCTTGCTTGATCACGACGTCAAC
TTGAACGCAAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10655:4120..4630+

>mRNA_S-firma_F_contig10655.888.1 ID=mRNA_S-firma_F_contig10655.888.1|Name=mRNA_S-firma_F_contig10655.888.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=690bp|location=Sequence derived from alignment at S-firma_F_contig10655:4120..4630+ (Sphaerotrichia firma ET2_F female)
ATGAGCAACGGCGAGAACAATGACGAGAAGCAAAGAACGCTCCTTCGCAA
CGCCAGAAAAAACGGCCTGAGCATCCCAAGAGCATGGGAAACAAGTTGGC
TGCATCAAAAGTCTGCATTTCCCTTCAATCGAACTAACATAACATCAGTC
ATGTTCCTGCTTGGCGTCAAATTTGATTGGCGCGACTCTGAGTACTCCAC
ACAGCTGCGGCCGTCGCGAACAATTTCGACTCGTGGCGAAAGTACTCTCG
CTCGGTCGTTTACCTGTTGCCCGAGTCTCGCGTGCGTGTGTGGCGCGAAG
TCTACGTGTGTCTGTAGGCTTAGGTACTGGACGGTGATTGGCTGAATGAG
CAACGGCGAGAACAATGACGAGAAGCAAAGAACGCTCCTTCGCAACGCCA
GAAAAAACGGCCTGAGCATCCCAAGAGCATGGGAAACAAGTTGGCTGCAT
CAAAAGTCTGCATTTCCCTTCAATCGAACTAACATAACATCAGTCATGTT
CCTGCTTGGCGTCAAATTTGATTGGCGCGACTCTGAGTACTCCACACAGC
TGCGGCCGTCGCGAACAATTTCGACTCGTGGCGAAAGTACTCTCGCTCGG
TCGTTTACCTGTTGCCCGAGTCTCGCGTGCGTGTGTGGCGCGAAGTCTAC
GTGTGTCTGTAGGCTTAGGTACTGGACGGTGATTGGCTGA
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