mRNA_S-firma_F_contig10652.883.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10652.883.1
Unique NamemRNA_S-firma_F_contig10652.883.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10652.883.1 vs. uniprot
Match: UPI0018D1DBFF (LOW QUALITY PROTEIN: neuroblastoma-amplified sequence n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D1DBFF)

HSP 1 Score: 61.6 bits (148), Expect = 2.390e-7
Identity = 64/240 (26.67%), Postives = 108/240 (45.00%), Query Frame = 1 
Query:    1 VTSVAHDAATDLLVIGGDSTWAPGAPPAVATSGVSMWRLFDGYPYYRLVGTAED-----GPPPVGLGVPRTMGTVPARAGAWVVRLVVSPDGAHVAGLDARGQARVWSAADGALLNVVLADN-----VVPRGEAAPAAPTPPTAAPHIPYVDVAWWSNDHLVLATSTGRVNVVPAATPATQDVLEPTPSGFLGAPCVVADADRGATLVLDCAR-TVQPR--RLQWAQLVDGGGGDSDDED 681
            V +VAH AA D L + G    +   P +   +G++ WR+    PYY+L   ++          + L +P     V ++  A++V++V+SPDG+H+  +   G+  VW       L ++   N     + P+ +      T           DV WWSN+ ++++   G V+V  ++     D+     + +L     VA     A + L+C R T QPR  R Q  +LV     D+D ED
Sbjct:  214 VAAVAHSAAHDTLYVAGVPRGSCKDPSSPLYAGLTAWRILSDDPYYKLSVVSDSLEAQMASDSLHLYIP----FVSSKNLAFIVQMVISPDGSHLLCVHCTGEVSVWR------LPLLKLQNRWPLAIQPQHDVDNPLETEEKREGMYHPADVDWWSNEDIIISRFNGAVSVCSSS-----DLAPLLQAQWLRGSARVASHSGAALVALECERSTHQPRAPRSQSTELVKQ---DADSED 435
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10652.883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0018D1DBFF2.390e-726.67LOW QUALITY PROTEIN: neuroblastoma-amplified seque... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10652contigS-firma_F_contig10652:1031..1795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000004553
Preferred nameNBAS
PFAMsNbas_N,Sec39
Max annot lvl33208|Metazoa
KEGG koko:K20473
GOsGO:0000149,GO:0000184,GO:0000956,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006890,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0016070,GO:0016071,GO:0016192,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034655,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048193,GO:0048518,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065007,GO:0070939,GO:0071704,GO:0080090,GO:0090304,GO:0099023,GO:1901360,GO:1901361,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000622,GO:2000623
Evalue4.28e-07
EggNOG OGsKOG1797@1|root,KOG1797@2759|Eukaryota,38ERE@33154|Opisthokonta,3BCXC@33208|Metazoa,3CZ7R@33213|Bilateria,485G1@7711|Chordata,48W87@7742|Vertebrata,4A1K1@7898|Actinopterygii
DescriptionNeuroblastoma amplified sequence
COG categoryS
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size681
Cds size681
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.2551258-CDS-S-firma_F_contig10652:1030..12221622815604.2551258-CDS-S-firma_F_contig10652:1030..1222Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10652 1031..1222 +
1696949447.8434653-CDS-S-firma_F_contig10652:1030..12221696949447.8434653-CDS-S-firma_F_contig10652:1030..1222Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10652 1031..1222 +
1622815604.2649412-CDS-S-firma_F_contig10652:1306..17951622815604.2649412-CDS-S-firma_F_contig10652:1306..1795Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10652 1307..1795 +
1696949447.9423249-CDS-S-firma_F_contig10652:1306..17951696949447.9423249-CDS-S-firma_F_contig10652:1306..1795Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10652 1307..1795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10652.883.1prot_S-firma_F_contig10652.883.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10652 1031..1795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10652.883.1

>prot_S-firma_F_contig10652.883.1 ID=prot_S-firma_F_contig10652.883.1|Name=mRNA_S-firma_F_contig10652.883.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=227bp
VTSVAHDAATDLLVIGGDSTWAPGAPPAVATSGVSMWRLFDGYPYYRLVG
TAEDGPPPVGLGVPRTMGTVPARAGAWVVRLVVSPDGAHVAGLDARGQAR
VWSAADGALLNVVLADNVVPRGEAAPAAPTPPTAAPHIPYVDVAWWSNDH
LVLATSTGRVNVVPAATPATQDVLEPTPSGFLGAPCVVADADRGATLVLD
CARTVQPRRLQWAQLVDGGGGDSDDED
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mRNA from alignment at S-firma_F_contig10652:1031..1795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10652.883.1 ID=mRNA_S-firma_F_contig10652.883.1|Name=mRNA_S-firma_F_contig10652.883.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=765bp|location=Sequence derived from alignment at S-firma_F_contig10652:1031..1795+ (Sphaerotrichia firma ET2_F female)
GTGACGTCCGTCGCCCACGACGCCGCCACCGACCTCCTCGTCATTGGGGG
CGACAGCACGTGGGCGCCGGGCGCGCCCCCCGCCGTGGCCACCTCTGGCG
TGTCCATGTGGCGCCTGTTTGACGGCTACCCGTACTACCGGCTGGTGGGG
ACGGCGGAGGACGGCCCCCCGCCGGTGGGGCTGGGCGTCCCCGTCACCCG
CTCCCTCCCCCTCTCCTCCCTTCTCAACCCCCTGGGGTGGGGGGCCCACC
TCGCCCGCTGCCGCCGCCTCTCCCAGCGCACCATGGGGACGGTGCCCGCC
CGCGCCGGCGCGTGGGTGGTGCGCCTGGTGGTGTCCCCCGACGGCGCCCA
CGTCGCCGGCCTGGACGCCCGGGGGCAGGCCCGGGTGTGGAGCGCCGCCG
ACGGCGCCCTCCTCAACGTCGTCCTCGCCGACAACGTGGTGCCCAGGGGG
GAGGCGGCGCCGGCCGCCCCCACGCCCCCCACCGCCGCCCCCCACATCCC
GTACGTGGACGTCGCCTGGTGGTCCAACGACCACCTGGTGCTGGCGACGT
CCACGGGGCGGGTGAACGTTGTCCCCGCCGCCACCCCCGCCACCCAGGAC
GTCCTCGAGCCGACGCCGTCCGGGTTCCTGGGCGCGCCCTGCGTCGTGGC
CGACGCCGACCGCGGGGCGACGTTGGTCTTGGACTGCGCCCGGACGGTGC
AGCCCCGCCGCCTGCAGTGGGCGCAGCTGGTGGACGGCGGCGGCGGCGAC
AGCGACGACGAGGAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10652:1031..1795+

>mRNA_S-firma_F_contig10652.883.1 ID=mRNA_S-firma_F_contig10652.883.1|Name=mRNA_S-firma_F_contig10652.883.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1362bp|location=Sequence derived from alignment at S-firma_F_contig10652:1031..1795+ (Sphaerotrichia firma ET2_F female)
GTGACGTCCGTCGCCCACGACGCCGCCACCGACCTCCTCGTCATTGGGGG
CGACAGCACGTGGGCGCCGGGCGCGCCCCCCGCCGTGGCCACCTCTGGCG
TGTCCATGTGGCGCCTGTTTGACGGCTACCCGTACTACCGGCTGGTGGGG
ACGGCGGAGGACGGCCCCCCGCCGGTGGGGCTGGGCGTCCCCGTGACGTC
CGTCGCCCACGACGCCGCCACCGACCTCCTCGTCATTGGGGGCGACAGCA
CGTGGGCGCCGGGCGCGCCCCCCGCCGTGGCCACCTCTGGCGTGTCCATG
TGGCGCCTGTTTGACGGCTACCCGTACTACCGGCTGGTGGGGACGGCGGA
GGACGGCCCCCCGCCGGTGGGGCTGGGCGTCCCCCGCACCATGGGGACGG
TGCCCGCCCGCGCCGGCGCGTGGGTGGTGCGCCTGGTGGTGTCCCCCGAC
GGCGCCCACGTCGCCGGCCTGGACGCCCGGGGGCAGGCCCGGGTGTGGAG
CGCCGCCGACGGCGCCCTCCTCAACGTCGTCCTCGCCGACAACGTGGTGC
CCAGGGGGGAGGCGGCGCCGGCCGCCCCCACGCCCCCCACCGCCGCCCCC
CACATCCCGTACGTGGACGTCGCCTGGTGGTCCAACGACCACCTGGTGCT
GGCGACGTCCACGGGGCGGGTGAACGTTGTCCCCGCCGCCACCCCCGCCA
CCCAGGACGTCCTCGAGCCGACGCCGTCCGGGTTCCTGGGCGCGCCCTGC
GTCGTGGCCGACGCCGACCGCGGGGCGACGTTGGTCTTGGACTGCGCCCG
GACGGTGCAGCCCCGCCGCCTGCAGTGGGCGCAGCTGGTGGACGGCGGCG
GCGGCGACAGCGACGACGAGGACCGCACCATGGGGACGGTGCCCGCCCGC
GCCGGCGCGTGGGTGGTGCGCCTGGTGGTGTCCCCCGACGGCGCCCACGT
CGCCGGCCTGGACGCCCGGGGGCAGGCCCGGGTGTGGAGCGCCGCCGACG
GCGCCCTCCTCAACGTCGTCCTCGCCGACAACGTGGTGCCCAGGGGGGAG
GCGGCGCCGGCCGCCCCCACGCCCCCCACCGCCGCCCCCCACATCCCGTA
CGTGGACGTCGCCTGGTGGTCCAACGACCACCTGGTGCTGGCGACGTCCA
CGGGGCGGGTGAACGTTGTCCCCGCCGCCACCCCCGCCACCCAGGACGTC
CTCGAGCCGACGCCGTCCGGGTTCCTGGGCGCGCCCTGCGTCGTGGCCGA
CGCCGACCGCGGGGCGACGTTGGTCTTGGACTGCGCCCGGACGGTGCAGC
CCCGCCGCCTGCAGTGGGCGCAGCTGGTGGACGGCGGCGGCGGCGACAGC
GACGACGAGGAC
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