mRNA_S-firma_F_contig1065.880.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1065.880.1
Unique NamemRNA_S-firma_F_contig1065.880.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1065.880.1 vs. uniprot
Match: D8LRP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.760e-28
Identity = 97/176 (55.11%), Postives = 105/176 (59.66%), Query Frame = 1 
Query:    1 AAADCAVHSTAAEHFRSWSSN---EGAVAAATAAXXXATALLKRGEAPFKQDEADNAKSTLSGLATVFRPSPSRAAEEPNHNPRKRSSSALFDSPTTTNRPEANNHERSSGGDNADGVGGRLTPRSMLTISARGH---HSPSSS----PVRGKRISPTSSPPSTGMWTPVASNYYH 498
            AAAD AVHS AAEHFRSW+SN   EGAVA     XXX   LLKRGE PFKQDEAD+AKS LSGLAT F  SP+R A+E      KRSS    DSP   +     N   + G             RSMLTISAR     HSPSSS    PVRGKR+SP SSP S+ M TP  S  YH
Sbjct: 2894 AAADRAVHSKAAEHFRSWTSNGDSEGAVAXXXXXXXXXXXLLKRGETPFKQDEADHAKSLLSGLATAFHSSPTRVAKET----WKRSSGGFGDSPAEQDNGRGRNGAEAGG-------------RSMLTISARDRDLAHSPSSSVSSSPVRGKRVSPMSSPLSSRMMTPHLSMDYH 3052
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BLAST of mRNA_S-firma_F_contig1065.880.1 vs. uniprot
Match: A0A6H5JGP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.280e-27
Identity = 99/188 (52.66%), Postives = 112/188 (59.57%), Query Frame = 1 
Query:    1 AAADCAVHSTAAEHFRSWSSN---EGAVAAATAAXXXATALLKRGEAPFKQDEADNAKSTLSGLATVFRPSPSRAAEEPNHNPRKRSSSALFDSPTTTNRPEANNHERSSGGDNADGVGGRLTPRSMLTISARG-------HHSPSSSPVRGKRISPTSSPPSTGMWTP-VASNYYHSAGELLADAAT 531
            AAAD AVHS A EHFRSW+SN   EGAVA     XXX   LLKRGE PFKQDEAD+AKS LSGLAT F  SP+R AEE      KRS     DSP           + + GG N    GGR    SMLTISAR          S SSSPVRGKR+SP SSP S+ M TP ++ +Y+ S    + D+AT
Sbjct: 3184 AAADRAVHSKAEEHFRSWTSNGDSEGAVAXXXXXXXXXXXLLKRGETPFKQDEADHAKSLLSGLATAFHSSPTRVAEET----WKRSPGGFGDSPA---------EQDNGGGRNGAEAGGR----SMLTISARDTDLAQSPSSSLSSSPVRGKRVSPMSSPLSSRMMTPHLSMDYHRSESPGIGDSAT 3354
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1065.880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRP6_ECTSI2.760e-2855.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGP4_9PHAE1.280e-2752.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1065contigS-firma_F_contig1065:2468..3230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LRP6
PFAMsPHD,SET
Max annot lvl2759|Eukaryota
KEGG koko:K03231,ko:K22156
KEGG Pathwayko03013,ko05134,map03013,map05134
Evalue4.53e-29
EggNOG OGsCOG2940@1|root,KOG1080@2759|Eukaryota
Descriptionhistone-lysine N-methyltransferase activity
COG categoryOU
BRITEko00000,ko00001,ko03012,ko03016,ko03019,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size764
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.9632776-CDS-S-firma_F_contig1065:2467..32291622815603.9632776-CDS-S-firma_F_contig1065:2467..3229Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 2468..3229 +
1696949447.567001-CDS-S-firma_F_contig1065:2467..32291696949447.567001-CDS-S-firma_F_contig1065:2467..3229Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 2468..3229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1065.880.1prot_S-firma_F_contig1065.880.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1065 2468..3229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1065.880.1

>prot_S-firma_F_contig1065.880.1 ID=prot_S-firma_F_contig1065.880.1|Name=mRNA_S-firma_F_contig1065.880.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=254bp
AAADCAVHSTAAEHFRSWSSNEGAVAAATAAAATATALLKRGEAPFKQDE
ADNAKSTLSGLATVFRPSPSRAAEEPNHNPRKRSSSALFDSPTTTNRPEA
NNHERSSGGDNADGVGGRLTPRSMLTISARGHHSPSSSPVRGKRISPTSS
PPSTGMWTPVASNYYHSAGELLADAATAAATATATVPDRSSSPGGSGGGL
AAARVQNGDKDNPANANAHANNASTRTSVDEVAVAVAVAEPRTPTSSCLV
PPLP
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mRNA from alignment at S-firma_F_contig1065:2468..3230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1065.880.1 ID=mRNA_S-firma_F_contig1065.880.1|Name=mRNA_S-firma_F_contig1065.880.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=763bp|location=Sequence derived from alignment at S-firma_F_contig1065:2468..3230+ (Sphaerotrichia firma ET2_F female)
GCCGCGGCGGATTGCGCGGTCCACAGCACGGCGGCCGAGCACTTCCGGAG
CTGGAGCTCCAACGAGGGCGCCGTGGCGGCGGCGACGGCGGCGGCGGCAA
CGGCGACGGCCCTGCTCAAGCGCGGGGAGGCACCGTTCAAGCAGGATGAG
GCCGACAACGCCAAGAGCACGCTGTCGGGACTGGCGACCGTGTTCCGCCC
TTCGCCCTCGAGGGCGGCGGAAGAGCCCAATCACAATCCCAGGAAGCGGT
CCTCGAGTGCGCTGTTCGACTCGCCGACGACTACGAATAGGCCGGAGGCG
AACAACCACGAGAGGAGCAGCGGTGGCGACAACGCCGACGGGGTTGGGGG
TCGACTGACGCCGAGGTCGATGCTGACGATTTCGGCTCGCGGCCACCACT
CCCCTTCTTCGTCGCCGGTGCGGGGCAAGCGGATCTCGCCCACGTCTTCC
CCGCCTTCGACCGGGATGTGGACGCCGGTGGCGAGCAACTACTACCACAG
CGCCGGCGAGCTCTTGGCTGATGCTGCCACAGCTGCAGCTACCGCTACCG
CTACCGTGCCCGACCGGTCCAGCAGCCCGGGGGGCTCCGGTGGTGGCTTG
GCCGCCGCTCGGGTGCAGAACGGAGACAAAGACAACCCCGCTAACGCCAA
CGCTCACGCCAACAATGCCAGCACCAGGACCAGCGTCGACGAGGTAGCGG
TAGCGGTAGCGGTGGCCGAACCCAGGACGCCCACTTCCTCGTGTCTTGTT
CCTCCTCTGCCCG
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Coding sequence (CDS) from alignment at S-firma_F_contig1065:2468..3230+

>mRNA_S-firma_F_contig1065.880.1 ID=mRNA_S-firma_F_contig1065.880.1|Name=mRNA_S-firma_F_contig1065.880.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1524bp|location=Sequence derived from alignment at S-firma_F_contig1065:2468..3230+ (Sphaerotrichia firma ET2_F female)
GCCGCGGCGGATTGCGCGGTCCACAGCACGGCGGCCGAGCACTTCCGGAG
CTGGAGCTCCAACGAGGGCGCCGTGGCGGCGGCGACGGCGGCGGCGGCAA
CGGCGACGGCCCTGCTCAAGCGCGGGGAGGCACCGTTCAAGCAGGATGAG
GCCGACAACGCCAAGAGCACGCTGTCGGGACTGGCGACCGTGTTCCGCCC
TTCGCCCTCGAGGGCGGCGGAAGAGCCCAATCACAATCCCAGGAAGCGGT
CCTCGAGTGCGCTGTTCGACTCGCCGACGACTACGAATAGGCCGGAGGCG
AACAACCACGAGAGGAGCAGCGGTGGCGACAACGCCGACGGGGTTGGGGG
TCGACTGACGCCGAGGTCGATGCTGACGATTTCGGCTCGCGGCCACCACT
CCCCTTCTTCGTCGCCGGTGCGGGGCAAGCGGATCTCGCCCACGTCTTCC
CCGCCTTCGACCGGGATGTGGACGCCGGTGGCGAGCAACTACTACCACAG
CGCCGGCGAGCTCTTGGCTGATGCTGCCACAGCTGCAGCTACCGCTACCG
CTACCGTGCCCGACCGGTCCAGCAGCCCGGGGGGCTCCGGTGGTGGCTTG
GCCGCCGCTCGGGTGCAGAACGGAGACAAAGACAACCCCGCTAACGCCAA
CGCTCACGCCAACAATGCCAGCACCAGGACCAGCGTCGACGAGGTAGCGG
TAGCGGTAGCGGTGGCCGAACCCAGGACGCCCACTTCCTCGTGTCTTGTT
CCTCCTCTGCCCGCCGCGGCGGATTGCGCGGTCCACAGCACGGCGGCCGA
GCACTTCCGGAGCTGGAGCTCCAACGAGGGCGCCGTGGCGGCGGCGACGG
CGGCGGCGGCAACGGCGACGGCCCTGCTCAAGCGCGGGGAGGCACCGTTC
AAGCAGGATGAGGCCGACAACGCCAAGAGCACGCTGTCGGGACTGGCGAC
CGTGTTCCGCCCTTCGCCCTCGAGGGCGGCGGAAGAGCCCAATCACAATC
CCAGGAAGCGGTCCTCGAGTGCGCTGTTCGACTCGCCGACGACTACGAAT
AGGCCGGAGGCGAACAACCACGAGAGGAGCAGCGGTGGCGACAACGCCGA
CGGGGTTGGGGGTCGACTGACGCCGAGGTCGATGCTGACGATTTCGGCTC
GCGGCCACCACTCCCCTTCTTCGTCGCCGGTGCGGGGCAAGCGGATCTCG
CCCACGTCTTCCCCGCCTTCGACCGGGATGTGGACGCCGGTGGCGAGCAA
CTACTACCACAGCGCCGGCGAGCTCTTGGCTGATGCTGCCACAGCTGCAG
CTACCGCTACCGCTACCGTGCCCGACCGGTCCAGCAGCCCGGGGGGCTCC
GGTGGTGGCTTGGCCGCCGCTCGGGTGCAGAACGGAGACAAAGACAACCC
CGCTAACGCCAACGCTCACGCCAACAATGCCAGCACCAGGACCAGCGTCG
ACGAGGTAGCGGTAGCGGTAGCGGTGGCCGAACCCAGGACGCCCACTTCC
TCGTGTCTTGTTCCTCCTCTGCCC
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