mRNA_S-firma_F_contig1064.868.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1064.868.1
Unique NamemRNA_S-firma_F_contig1064.868.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: D8LEN9_ECTSI (Membrane acyl-CoA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN9_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 5.550e-61
Identity = 107/146 (73.29%), Postives = 113/146 (77.40%), Query Frame = 1
Query:    1 AVVEREESADMTRGDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNT------------------QLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGLGG 384
            AVVEREE AD  RGD  PDVETVFSQVRNGRLKR+EDSLEKGF +DT DE+GNTAL+VACQ                      QLCE+LLRRGADVNHRNGRGN PLHYAMAYD QGVLGE+LISRGGDDTV N DGLSCYDGLGG
Sbjct: 2623 AVVEREEFADQNRGDTAPDVETVFSQVRNGRLKRVEDSLEKGFSIDTTDEHGNTALLVACQAGFAKQWTGDALKPADAVYHIRQLCEMLLRRGADVNHRNGRGNTPLHYAMAYDTQGVLGEMLISRGGDDTVTNRDGLSCYDGLGG 2768          
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A7S2RQ58_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQ58_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.310e-47
Identity = 77/130 (59.23%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    1 AVVEREESADMTR--GDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGLGG 384
            A V  EE A + R  GD  PD+ETVFSQ RNGR+KRLE+SL   FPVDT DE GNT L++  QN N +L EL++ RGA++NH+N  GN  LH+AMAYD +G LGELLI +G DDT+ N  GL+ YDG+GG
Sbjct:    4 AAVLHEEKAAVVRAGGDGVPDMETVFSQARNGRVKRLEESLNADFPVDTLDEKGNTLLLIGAQNCNKKLMELVIHRGANINHQNASGNTALHFAMAYDMEGTLGELLIQKGADDTIENAAGLTPYDGIGG 133          
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A7S1UK14_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK14_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.940e-46
Identity = 75/132 (56.82%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    4 VVEREESADMTR------GDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGLG 381
            VV  E+SA++ R      G+  P ++ VFSQ RNGR+KR+E+SL  GFP+D ED  GNT LMVA Q  N +L  +L+ RGAD+NH+N  GN  LHYAMAYDP+GV+GE LI +G DD++ N  GLSCYDGLG
Sbjct:   92 VVREEKSAELVRAGQAAPGEGVPKLDAVFSQARNGRIKRVEESLNLGFPIDAEDAKGNTLLMVAVQQTNQKLTAILISRGADLNHQNAAGNTALHYAMAYDPEGVMGEFLIEKGADDSLENVVGLSCYDGLG 223          
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A0W8DU79_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DU79_PHYNI)

HSP 1 Score: 162 bits (411), Expect = 7.140e-46
Identity = 78/130 (60.00%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    7 VEREESADMTRGDAPP------DVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
            V  E +A  TRG  P       DV+TVFSQ RNGR+KRL +SL+ GFP+D+ED+ GNT L++ACQNVN ++ ELL+ R A+VNHRN +GN PLH+AMAYD +GVLGE LIS G DDT+ N+ GL+ YDGL
Sbjct:  297 VNHEANAARTRGQEPAGDESSLDVDTVFSQARNGRMKRLVESLDAGFPIDSEDDKGNTLLLLACQNVNQKMVELLVARRANVNHRNAQGNTPLHFAMAYDSEGVLGEYLISHGADDTIENNSGLTPYDGL 426          
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: W2Q2Y3_PHYPN (SAM domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q2Y3_PHYPN)

HSP 1 Score: 162 bits (411), Expect = 7.040e-44
Identity = 78/130 (60.00%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    7 VEREESADMTRGDAPP------DVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
            V  E +A  TRG  P       DV+TVFSQ RNGR+KRL +SL+ GFP+D+ED+ GNT L++ACQNVN ++ ELL+ R A+VNHRN +GN PLH+AMAYD +GVLGE LIS G DDT+ N+ GL+ YDGL
Sbjct: 2168 VNHEANAARTRGQEPAGDESSLDVDTVFSQARNGRMKRLVESLDAGFPIDSEDDKGNTLLLLACQNVNQKMVELLVARRANVNHRNAQGNTPLHFAMAYDSEGVLGEYLISHGADDTIENNSGLTPYDGL 2297          
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A329T530_9STRA (SAM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T530_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.780e-43
Identity = 78/130 (60.00%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    7 VEREESADMTRGDAPP------DVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
            V  E +A  TRG  P       DV+TVFSQ RNGR+KRL +SL+ GFP+D+ED+ GNT L++ACQNVN ++ ELL+ R A+VNHRN +GN PLH+AMAYD +GVLGE LIS G DDT+ N+ GL+ YDGL
Sbjct: 2160 VNYEANAARTRGQEPAGDESSLDVDTVFSQARNGRMKRLVESLDAGFPIDSEDDKGNTLLLLACQNVNQKMVELLVARRANVNHRNAQGNTPLHFAMAYDGEGVLGEYLISHGADDTIENNSGLTPYDGL 2289          
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A482SPW6_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPW6_9ARCH)

HSP 1 Score: 147 bits (371), Expect = 1.880e-43
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1
Query:   52 PDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
            P ++TVFSQ RNGR+KR+E+SL  GFP+D EDE G T L+VA QN N +L E+L+ RGA +NH+N +GN  LHYA+A+DP+G LGE LI  G DDT+ N +GL+ YDG+
Sbjct:    4 PSLDTVFSQARNGRIKRVEESLNLGFPIDAEDEKGTTLLLVAAQNSNKRLAEMLILRGASINHQNSQGNTALHYALAFDPEGALGEYLIEHGADDTLENVEGLTAYDGV 112          
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A5D6Y5F8_9STRA (SAM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5F8_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.500e-43
Identity = 77/127 (60.63%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 AVVEREESADMTRGDAP-PDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
            + V+ EE A++ R  A  PD++TVFSQ RNGRLKRL +SL+ GF VD EDE GNT L++ACQNVN ++ ELL+ + A+VNHRN +GN PLH+AMAYD  G LGE LI+RG DDT+ N  GL+ YDGL
Sbjct: 1819 SAVQHEEGAELARARAAVPDLDTVFSQARNGRLKRLAESLDAGFSVDEEDEKGNTLLLIACQNVNVKMVELLVAKRANVNHRNAQGNTPLHFAMAYDADGALGEYLIARGADDTLENAFGLTPYDGL 1945          
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A6A3N4X4_9STRA (SAM domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N4X4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.530e-43
Identity = 76/131 (58.02%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    7 VEREESADMTRGDAPP-------DVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
            V  E +A   RG  P        DV+TVFSQ RNGR+KRL +SL+ GFP+D+ED+ GNT L++ACQNVN ++ ELL+ R A+VNHRN +GN PLH+AMAYD +GVLGE LI+ G DDT+ N+ GL+ YDGL
Sbjct: 2207 VNHEANAARARGQEPTGGEEMSLDVDTVFSQARNGRMKRLVESLDAGFPIDSEDDKGNTLLLLACQNVNQRMVELLVTRRANVNHRNAQGNTPLHFAMAYDSEGVLGEYLIAHGADDTIENNSGLTAYDGL 2337          
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A7S1Y181_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y181_9STRA)

HSP 1 Score: 158 bits (399), Expect = 6.280e-43
Identity = 75/132 (56.82%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    4 VVEREESADMTR------GDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGLG 381
            VV  E+SA++ R      G+  P ++ VFSQ RNGR+KR+E+SL  GFP+D ED  GNT LMVA Q  N +L  +L+ RGAD+NH+N  GN  LHYAMAYDP+GV+GE LI +G DD++ N  GLSCYDGLG
Sbjct:  481 VVREEKSAELVRAGQAAPGEGVPKLDAVFSQARNGRIKRVEESLNLGFPIDAEDAKGNTLLMVAVQQTNQKLTAILISRGADLNHQNAAGNTALHYAMAYDPEGVMGEFLIEKGADDSLENVVGLSCYDGLG 612          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEN9_ECTSI5.550e-6173.29Membrane acyl-CoA binding protein n=1 Tax=Ectocarp... [more]
A0A7S2RQ58_9STRA1.310e-4759.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UK14_9STRA2.940e-4656.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0W8DU79_PHYNI7.140e-4660.00Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
W2Q2Y3_PHYPN7.040e-4460.00SAM domain-containing protein n=10 Tax=Phytophthor... [more]
A0A329T530_9STRA1.780e-4360.00SAM domain-containing protein n=2 Tax=Phytophthora... [more]
A0A482SPW6_9ARCH1.880e-4358.72Ankyrin repeat domain-containing protein n=1 Tax=a... [more]
A0A5D6Y5F8_9STRA4.500e-4360.63SAM domain-containing protein n=1 Tax=Pythium bras... [more]
A0A6A3N4X4_9STRA4.530e-4358.02SAM domain-containing protein n=6 Tax=Phytophthora... [more]
A0A7S1Y181_9STRA6.280e-4356.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1064contigS-firma_F_contig1064:3962..4635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LEN9
PFAMsDHC_N1,DHC_N2,IQ,MT,SAM_1
Max annot lvl2759|Eukaryota
KEGG koko:K10408,ko:K10413
KEGG Pathwayko04145,ko04962,ko05016,ko05132,map04145,map04962,map05016,map05132
Evalue3.12e-57
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
COG categoryZ
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1064.868.1prot_S-firma_F_contig1064.868.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1064 3962..4605 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.0400946-CDS-S-firma_F_contig1064:3961..41681622815603.0400946-CDS-S-firma_F_contig1064:3961..4168Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1064 3962..4168 -
1696949447.0230756-CDS-S-firma_F_contig1064:3961..41681696949447.0230756-CDS-S-firma_F_contig1064:3961..4168Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1064 3962..4168 -
1622815603.0598857-CDS-S-firma_F_contig1064:4452..46051622815603.0598857-CDS-S-firma_F_contig1064:4452..4605Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1064 4453..4605 -
1696949447.0404022-CDS-S-firma_F_contig1064:4452..46051696949447.0404022-CDS-S-firma_F_contig1064:4452..4605Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1064 4453..4605 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.0733776-UTR-S-firma_F_contig1064:4605..46351622815603.0733776-UTR-S-firma_F_contig1064:4605..4635Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1064 4606..4635 -
1696949447.0558207-UTR-S-firma_F_contig1064:4605..46351696949447.0558207-UTR-S-firma_F_contig1064:4605..4635Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1064 4606..4635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1064.868.1

>prot_S-firma_F_contig1064.868.1 ID=prot_S-firma_F_contig1064.868.1|Name=mRNA_S-firma_F_contig1064.868.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=120bp
MTRGDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVAC
QNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGG
DDTVANHDGLSCYDGLGGP*
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mRNA from alignment at S-firma_F_contig1064:3962..4635-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1064.868.1 ID=mRNA_S-firma_F_contig1064.868.1|Name=mRNA_S-firma_F_contig1064.868.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=674bp|location=Sequence derived from alignment at S-firma_F_contig1064:3962..4635- (Sphaerotrichia firma ET2_F female)
GCCGTCGTCGAGCGCGAAGAATCCGCGGACATGACACGAGGGGACGCCCC CCCCGATGTGGAGACGGTGTTCAGCCAGGTTCGCAACGGCCGGCTAAAAC GGCTAGAAGACTCTCTGGAAAAGGGGTTCCCTGTGGACACAGAGGACGAG TACGGCAACACGGCCCTCATGGTGGCTTGTCAGGTACGGTTGGAAGACAA CTTCCGTCACGGGCAGGAAAGGACGTTACATAATTTTGCCCAGCGCCTCC CGCCCTAACGGAGACTACGTGAGACACGCCTTCTTCCCATGAACTCGCCT TTTAGCTGTTGTGGTGTCAAACGAGTACCCCAGCAAGCAAAATTTGACCC ACCGGTGTTCCACCAAGAGGTAGATCGTGCATGCGCGCCCTGTGCTCTTA TCCCCCCCCGCCCCTTCCCCTCCGCTTTCTCTCGCTTGTATTCACTCTCA CAAAAAAACACACACAGAACGTCAACACGCAGCTTTGCGAGCTGCTGCTG CGGAGAGGGGCGGACGTGAACCACCGCAATGGGCGTGGCAACATGCCGCT GCACTACGCCATGGCGTACGACCCACAGGGCGTGCTGGGGGAGCTGCTCA TCTCCCGGGGCGGGGACGACACGGTCGCCAACCACGACGGTCTCTCGTGC TACGACGGGCTGGGGGGACCCTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig1064:3962..4635-

>mRNA_S-firma_F_contig1064.868.1 ID=mRNA_S-firma_F_contig1064.868.1|Name=mRNA_S-firma_F_contig1064.868.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=720bp|location=Sequence derived from alignment at S-firma_F_contig1064:3962..4635- (Sphaerotrichia firma ET2_F female)
ATGACACGAGGGGACGCCCCCCCCGATGTGGAGACGGTGTTCAGCCAGGT
TCGCAACGGCCGGCTAAAACGGCTAGAAGACTCTCTGGAAAAGGGGTTCC
CTGTGGACACAGAGGACGAGTACGGCAACACGGCCCTCATGGTGGCTTGT
CAGATGACACGAGGGGACGCCCCCCCCGATGTGGAGACGGTGTTCAGCCA
GGTTCGCAACGGCCGGCTAAAACGGCTAGAAGACTCTCTGGAAAAGGGGT
TCCCTGTGGACACAGAGGACGAGTACGGCAACACGGCCCTCATGGTGGCT
TGTCAGAACGTCAACACGCAGCTTTGCGAGCTGCTGCTGCGGAGAGGGGC
GGACGTGAACCACCGCAATGGGCGTGGCAACATGCCGCTGCACTACGCCA
TGGCGTACGACCCACAGGGCGTGCTGGGGGAGCTGCTCATCTCCCGGGGC
GGGGACGACACGGTCGCCAACCACGACGGTCTCTCGTGCTACGACGGGCT
GGGGGGACCCTAAAACGTCAACACGCAGCTTTGCGAGCTGCTGCTGCGGA
GAGGGGCGGACGTGAACCACCGCAATGGGCGTGGCAACATGCCGCTGCAC
TACGCCATGGCGTACGACCCACAGGGCGTGCTGGGGGAGCTGCTCATCTC
CCGGGGCGGGGACGACACGGTCGCCAACCACGACGGTCTCTCGTGCTACG
ACGGGCTGGGGGGACCCTAA
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