mRNA_S-firma_F_contig1064.868.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: D8LEN9_ECTSI (Membrane acyl-CoA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN9_ECTSI) HSP 1 Score: 211 bits (538), Expect = 5.550e-61 Identity = 107/146 (73.29%), Postives = 113/146 (77.40%), Query Frame = 1
Query: 1 AVVEREESADMTRGDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNT------------------QLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGLGG 384
AVVEREE AD RGD PDVETVFSQVRNGRLKR+EDSLEKGF +DT DE+GNTAL+VACQ QLCE+LLRRGADVNHRNGRGN PLHYAMAYD QGVLGE+LISRGGDDTV N DGLSCYDGLGG
Sbjct: 2623 AVVEREEFADQNRGDTAPDVETVFSQVRNGRLKRVEDSLEKGFSIDTTDEHGNTALLVACQAGFAKQWTGDALKPADAVYHIRQLCEMLLRRGADVNHRNGRGNTPLHYAMAYDTQGVLGEMLISRGGDDTVTNRDGLSCYDGLGG 2768
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A7S2RQ58_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQ58_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.310e-47 Identity = 77/130 (59.23%), Postives = 95/130 (73.08%), Query Frame = 1
Query: 1 AVVEREESADMTR--GDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGLGG 384
A V EE A + R GD PD+ETVFSQ RNGR+KRLE+SL FPVDT DE GNT L++ QN N +L EL++ RGA++NH+N GN LH+AMAYD +G LGELLI +G DDT+ N GL+ YDG+GG
Sbjct: 4 AAVLHEEKAAVVRAGGDGVPDMETVFSQARNGRVKRLEESLNADFPVDTLDEKGNTLLLIGAQNCNKKLMELVIHRGANINHQNASGNTALHFAMAYDMEGTLGELLIQKGADDTIENAAGLTPYDGIGG 133
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A7S1UK14_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK14_9STRA) HSP 1 Score: 158 bits (399), Expect = 2.940e-46 Identity = 75/132 (56.82%), Postives = 95/132 (71.97%), Query Frame = 1
Query: 4 VVEREESADMTR------GDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGLG 381
VV E+SA++ R G+ P ++ VFSQ RNGR+KR+E+SL GFP+D ED GNT LMVA Q N +L +L+ RGAD+NH+N GN LHYAMAYDP+GV+GE LI +G DD++ N GLSCYDGLG
Sbjct: 92 VVREEKSAELVRAGQAAPGEGVPKLDAVFSQARNGRIKRVEESLNLGFPIDAEDAKGNTLLMVAVQQTNQKLTAILISRGADLNHQNAAGNTALHYAMAYDPEGVMGEFLIEKGADDSLENVVGLSCYDGLG 223
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A0W8DU79_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DU79_PHYNI) HSP 1 Score: 162 bits (411), Expect = 7.140e-46 Identity = 78/130 (60.00%), Postives = 98/130 (75.38%), Query Frame = 1
Query: 7 VEREESADMTRGDAPP------DVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
V E +A TRG P DV+TVFSQ RNGR+KRL +SL+ GFP+D+ED+ GNT L++ACQNVN ++ ELL+ R A+VNHRN +GN PLH+AMAYD +GVLGE LIS G DDT+ N+ GL+ YDGL
Sbjct: 297 VNHEANAARTRGQEPAGDESSLDVDTVFSQARNGRMKRLVESLDAGFPIDSEDDKGNTLLLLACQNVNQKMVELLVARRANVNHRNAQGNTPLHFAMAYDSEGVLGEYLISHGADDTIENNSGLTPYDGL 426
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: W2Q2Y3_PHYPN (SAM domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q2Y3_PHYPN) HSP 1 Score: 162 bits (411), Expect = 7.040e-44 Identity = 78/130 (60.00%), Postives = 98/130 (75.38%), Query Frame = 1
Query: 7 VEREESADMTRGDAPP------DVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
V E +A TRG P DV+TVFSQ RNGR+KRL +SL+ GFP+D+ED+ GNT L++ACQNVN ++ ELL+ R A+VNHRN +GN PLH+AMAYD +GVLGE LIS G DDT+ N+ GL+ YDGL
Sbjct: 2168 VNHEANAARTRGQEPAGDESSLDVDTVFSQARNGRMKRLVESLDAGFPIDSEDDKGNTLLLLACQNVNQKMVELLVARRANVNHRNAQGNTPLHFAMAYDSEGVLGEYLISHGADDTIENNSGLTPYDGL 2297
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A329T530_9STRA (SAM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T530_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.780e-43 Identity = 78/130 (60.00%), Postives = 98/130 (75.38%), Query Frame = 1
Query: 7 VEREESADMTRGDAPP------DVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
V E +A TRG P DV+TVFSQ RNGR+KRL +SL+ GFP+D+ED+ GNT L++ACQNVN ++ ELL+ R A+VNHRN +GN PLH+AMAYD +GVLGE LIS G DDT+ N+ GL+ YDGL
Sbjct: 2160 VNYEANAARTRGQEPAGDESSLDVDTVFSQARNGRMKRLVESLDAGFPIDSEDDKGNTLLLLACQNVNQKMVELLVARRANVNHRNAQGNTPLHFAMAYDGEGVLGEYLISHGADDTIENNSGLTPYDGL 2289
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A482SPW6_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPW6_9ARCH) HSP 1 Score: 147 bits (371), Expect = 1.880e-43 Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1
Query: 52 PDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
P ++TVFSQ RNGR+KR+E+SL GFP+D EDE G T L+VA QN N +L E+L+ RGA +NH+N +GN LHYA+A+DP+G LGE LI G DDT+ N +GL+ YDG+
Sbjct: 4 PSLDTVFSQARNGRIKRVEESLNLGFPIDAEDEKGTTLLLVAAQNSNKRLAEMLILRGASINHQNSQGNTALHYALAFDPEGALGEYLIEHGADDTLENVEGLTAYDGV 112
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A5D6Y5F8_9STRA (SAM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5F8_9STRA) HSP 1 Score: 160 bits (405), Expect = 4.500e-43 Identity = 77/127 (60.63%), Postives = 97/127 (76.38%), Query Frame = 1
Query: 1 AVVEREESADMTRGDAP-PDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
+ V+ EE A++ R A PD++TVFSQ RNGRLKRL +SL+ GF VD EDE GNT L++ACQNVN ++ ELL+ + A+VNHRN +GN PLH+AMAYD G LGE LI+RG DDT+ N GL+ YDGL
Sbjct: 1819 SAVQHEEGAELARARAAVPDLDTVFSQARNGRLKRLAESLDAGFSVDEEDEKGNTLLLIACQNVNVKMVELLVAKRANVNHRNAQGNTPLHFAMAYDADGALGEYLIARGADDTLENAFGLTPYDGL 1945
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A6A3N4X4_9STRA (SAM domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N4X4_9STRA) HSP 1 Score: 160 bits (405), Expect = 4.530e-43 Identity = 76/131 (58.02%), Postives = 97/131 (74.05%), Query Frame = 1
Query: 7 VEREESADMTRGDAPP-------DVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGL 378
V E +A RG P DV+TVFSQ RNGR+KRL +SL+ GFP+D+ED+ GNT L++ACQNVN ++ ELL+ R A+VNHRN +GN PLH+AMAYD +GVLGE LI+ G DDT+ N+ GL+ YDGL
Sbjct: 2207 VNHEANAARARGQEPTGGEEMSLDVDTVFSQARNGRMKRLVESLDAGFPIDSEDDKGNTLLLLACQNVNQRMVELLVTRRANVNHRNAQGNTPLHFAMAYDSEGVLGEYLIAHGADDTIENNSGLTAYDGL 2337
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Match: A0A7S1Y181_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y181_9STRA) HSP 1 Score: 158 bits (399), Expect = 6.280e-43 Identity = 75/132 (56.82%), Postives = 95/132 (71.97%), Query Frame = 1
Query: 4 VVEREESADMTR------GDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACQNVNTQLCELLLRRGADVNHRNGRGNMPLHYAMAYDPQGVLGELLISRGGDDTVANHDGLSCYDGLG 381
VV E+SA++ R G+ P ++ VFSQ RNGR+KR+E+SL GFP+D ED GNT LMVA Q N +L +L+ RGAD+NH+N GN LHYAMAYDP+GV+GE LI +G DD++ N GLSCYDGLG
Sbjct: 481 VVREEKSAELVRAGQAAPGEGVPKLDAVFSQARNGRIKRVEESLNLGFPIDAEDAKGNTLLMVAVQQTNQKLTAILISRGADLNHQNAAGNTALHYAMAYDPEGVMGEFLIEKGADDSLENVVGLSCYDGLG 612 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1064.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1064.868.1 >prot_S-firma_F_contig1064.868.1 ID=prot_S-firma_F_contig1064.868.1|Name=mRNA_S-firma_F_contig1064.868.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=120bp MTRGDAPPDVETVFSQVRNGRLKRLEDSLEKGFPVDTEDEYGNTALMVACback to top mRNA from alignment at S-firma_F_contig1064:3962..4635- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1064.868.1 ID=mRNA_S-firma_F_contig1064.868.1|Name=mRNA_S-firma_F_contig1064.868.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=674bp|location=Sequence derived from alignment at S-firma_F_contig1064:3962..4635- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1064:3962..4635- >mRNA_S-firma_F_contig1064.868.1 ID=mRNA_S-firma_F_contig1064.868.1|Name=mRNA_S-firma_F_contig1064.868.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=720bp|location=Sequence derived from alignment at S-firma_F_contig1064:3962..4635- (Sphaerotrichia firma ET2_F female)back to top |