mRNA_S-firma_F_contig10627.856.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10627.856.1
Unique NamemRNA_S-firma_F_contig10627.856.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10627.856.1 vs. uniprot
Match: D7G0F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F9_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 2.100e-68
Identity = 137/253 (54.15%), Postives = 165/253 (65.22%), Query Frame = 1 
Query:    1 DNKAKIWVVRLLTSLLQSACPPKRPSSAXXXXXXXXXXXXATPGETEDLPGVGVGRLGDMFEPKGAVSILLDLAEKEAKLEEDRGADARSPLLQALVQACVVADECNKKRGLGAVARDGAGASFPEWPRRANTTRSDDNRSVRTEPGSPVVRSPLLAVPGYVAPAGTGGARMIRWHVKVLGLSSSSPR----IGVGQPQSPVEKSGLQRSPWLLTWDSAGTIQMTTWSGKGTRLSFGPQVKEGDVVTVEVDAV 747
            DNKAKIWVVRL++SLLQSAC PK    +                E  D       RL  MFEP G V +LL+LA+KEAK EED+G   RSPLLQALVQACVVADEC+KKRG GAV RDGA A FP W +RAN  RSDD+R VR+   + +  +PL+A PG+VAP G GG  +IRWHVKVL +S S PR    +GV QP + V   G     WLLTW   G +QM   +G+G  L +GP++K GD+VTVEVDA+
Sbjct:  201 DNKAKIWVVRLISSLLQSACSPKADGDSL---------------EAADWDD----RLEAMFEPAGPVPVLLELAKKEAKAEEDKGTSTRSPLLQALVQACVVADECDKKRGPGAVLRDGAEAVFPRWSQRANVERSDDDRLVRSTSNA-IDTAPLVATPGFVAPVGMGGRGVIRWHVKVLAVSESGPRSGLRLGVFQPNTSV---GCPS--WLLTWGCDGNLQM---AGQGMPLPYGPKIKTGDMVTVEVDAL 425
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BLAST of mRNA_S-firma_F_contig10627.856.1 vs. uniprot
Match: A0A6H5K114_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.270e-15
Identity = 52/98 (53.06%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 DNKAKIWVVRLLTSLLQSACPPKRPSSAXXXXXXXXXXXXATPGETEDLPGVGVGRLGDMFEPKGAVSILLDLAEKEAKLEEDRGADARSPLLQALVQ 294
            DNKAKIWVVRL++SLLQSAC PK   ++                E  D       RL  MFEP G V +LL+LA+KEAK EED+G   RSPLLQALVQ
Sbjct: 4496 DNKAKIWVVRLISSLLQSACSPKADCNSL---------------EAADWDD----RLEAMFEPAGPVPVLLELAKKEAKAEEDKGISTRSPLLQALVQ 4574
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10627.856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0F9_ECTSI2.100e-6854.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K114_9PHAE1.270e-1553.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10627contigS-firma_F_contig10627:203..3016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G0F9
PFAMsFHA,HECT,Kelch_1,Kelch_4,Laminin_G_3,MIB_HERC2,RCC1,SPRY,Vps62
Max annot lvl2759|Eukaryota
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Evalue3.44e-69
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
EC2.3.2.26
Descriptionguanyl-nucleotide exchange factor activity
COG categoryDZ
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons6
Model size751
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10627.856.1prot_S-firma_F_contig10627.856.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10627 203..3014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.9352233-CDS-S-firma_F_contig10627:202..2711622815601.9352233-CDS-S-firma_F_contig10627:202..271Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 203..271 +
1696949446.2086356-CDS-S-firma_F_contig10627:202..2711696949446.2086356-CDS-S-firma_F_contig10627:202..271Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 203..271 +
1622815601.9473464-CDS-S-firma_F_contig10627:700..9251622815601.9473464-CDS-S-firma_F_contig10627:700..925Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 701..925 +
1696949446.2212508-CDS-S-firma_F_contig10627:700..9251696949446.2212508-CDS-S-firma_F_contig10627:700..925Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 701..925 +
1622815601.9596334-CDS-S-firma_F_contig10627:1405..14661622815601.9596334-CDS-S-firma_F_contig10627:1405..1466Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 1406..1466 +
1696949446.2325923-CDS-S-firma_F_contig10627:1405..14661696949446.2325923-CDS-S-firma_F_contig10627:1405..1466Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 1406..1466 +
1622815601.972963-CDS-S-firma_F_contig10627:1790..19561622815601.972963-CDS-S-firma_F_contig10627:1790..1956Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 1791..1956 +
1696949446.2426553-CDS-S-firma_F_contig10627:1790..19561696949446.2426553-CDS-S-firma_F_contig10627:1790..1956Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 1791..1956 +
1622815601.9906278-CDS-S-firma_F_contig10627:2609..27451622815601.9906278-CDS-S-firma_F_contig10627:2609..2745Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 2610..2745 +
1696949446.2544572-CDS-S-firma_F_contig10627:2609..27451696949446.2544572-CDS-S-firma_F_contig10627:2609..2745Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 2610..2745 +
1622815602.0037193-CDS-S-firma_F_contig10627:2924..30141622815602.0037193-CDS-S-firma_F_contig10627:2924..3014Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 2925..3014 +
1696949446.262987-CDS-S-firma_F_contig10627:2924..30141696949446.262987-CDS-S-firma_F_contig10627:2924..3014Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10627 2925..3014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10627.856.1

>prot_S-firma_F_contig10627.856.1 ID=prot_S-firma_F_contig10627.856.1|Name=mRNA_S-firma_F_contig10627.856.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=249bp
DNKAKIWVVRLLTSLLQSACPPKRPSSASAGAAGAAGAAAATPGETEDLP
GVGVGRLGDMFEPKGAVSILLDLAEKEAKLEEDRGADARSPLLQALVQAC
VVADECNKKRGLGAVARDGAGASFPEWPRRANTTRSDDNRSVRTEPGSPV
VRSPLLAVPGYVAPAGTGGARMIRWHVKVLGLSSSSPRIGVGQPQSPVEK
SGLQRSPWLLTWDSAGTIQMTTWSGKGTRLSFGPQVKEGDVVTVEVDAV
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mRNA from alignment at S-firma_F_contig10627:203..3016+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10627.856.1 ID=mRNA_S-firma_F_contig10627.856.1|Name=mRNA_S-firma_F_contig10627.856.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2814bp|location=Sequence derived from alignment at S-firma_F_contig10627:203..3016+ (Sphaerotrichia firma ET2_F female)
GACAACAAGGCCAAGATTTGGGTGGTGCGCCTCCTCACCTCGCTGCTGCA
GAGCGCCTGCCCGCCCAAGGTGCCAGAAGCTAGACTTAAGTAGACGTGTA
GGTGGGAGTTAGTTGGGCTACCTGCTGTGTTGTGCTTGATCTAGTGGTTG
ATTTGCAGATGCCACAAATCGACAGCGCGTCTAACATGGTGTAAGCACCT
TTTTTTTCTGGTAGAATTCGTGCGGCTAGTTCAGTTGATGAGAGCCAAAC
CAACTCTCTGGCTCGCTCACATTCAAAGGCAGCAGAGCCCGCCTCCACAC
TCAGTCGTGGCGACTAGATAGACTCCTTAAAAGGGCGCACCGCGAGCGGA
CTAGCATTTCTGCATCCCAGAAACCCCCGAAACACAAGTAAACAGCTTTT
ACAGCCTACGAGTAAATACACAGCCGTAAGCCTATCTGAAACCTGTCTCG
ACCTATCCCTCCCGCTTTCGTGCGCCCCGCGTGTGTTCCGCCGACAAGCG
TCCGTCGTCGGCGTCGGCGGGCGCAGCGGGCGCAGCGGGCGCAGCGGCGG
CCACCCCCGGCGAGACAGAAGACCTGCCCGGCGTCGGTGTCGGCCGGCTG
GGAGACATGTTCGAGCCCAAGGGGGCCGTGTCCATTCTGCTGGATTTGGC
GGAGAAGGAGGCCAAGCTCGAGGAAGACAGGGGGGCCGACGCCAGGAGCC
CCCTGCTGCAGGCGCTGGTCCAGGTCGGTCTAGTTTCTCCGGGCTCGCGC
CGAGTTTGTTAGTTGGGTTGCTGCTCTTGTGAAAGGGGCGAAGGGAAGGA
CGAGGGCGGGTTGTTGTGTGGTGATGTTCGCCTTGGAGCGATACAGGGTG
ATGCAGTATGCACCAATGTTTGCGCTTTCTCTTTCTTGGGTGTGGGACCG
CGCCCACCCTTGACGAAAACGCGTGTATTATTTATTTCCTGGGCCTCCCG
AGGCATCGTCGGGTTCACGGCATTCACTCATCTCCTGCCGTGCGTTTTGC
TCCTGGGGAGGTAGCTGCGCGTGGAATCGCCGTCGGTCGGTGCCGTGGGC
GGTGGTGGCTGGCGGCTGGTACTCTTCCAGCGGTTGTGGGCAGTACTGGT
GTGTGTACGATGACACCGAGAGCCTCGCAATGGCGTCCACAAAATGCGAT
TTAGGCAGCAGACGCTCACGCCTCTCGTTTTGCTTCGCGGCCGGACTTGA
CAGGCTTGCGTGGTGGCCGACGAGTGCAACAAGAAGAGGGGGCTTGGCGC
TGTTGCGAGAGACGGTGGGTGCGGCGCCGGCACGCGAGCGGCTTGGTGTC
GAGGCATCGCTTGCTGAGCAGCGTCCCCGGTGCCGGTGGTGGTGATTGCC
GCGAAAACCGCGAAAACCTTGCTGCTGAGTCGTTTTGTTTCCGGTTGCCC
GTGGAGTCTCTGAACCCACACACGCTTGGACGGGCTCTCGCGTTTGCACG
CTGCCGAAGCGCGAACCTGCGGGGCCCCCGAAGCCCTCTAGGCCTCGTCC
CGTTCGTTCTTTTTGATCGCCGCCCGGATCCAATCATCCGGTCTCACCGC
CAACCCGGTCCCCACCGATGCGAATCGAACTGAAGCAGGCGCAGGCGCTT
CCTTCCCCGAGTGGCCGAGACGCGCCAACACCACGAGGTCCGACGACAAC
CGGTCCGTGCGCACGGAGCCGGGGTCTCCTGTTGTGAGGTCCCCGCTCCT
GGCGGTGCCGGGCTACGTGGCTCCCGCGGGCACGGGCGGGGCCAGGATGA
TACGGTGCGCGTTTCTTGCTTGGTGTTCTCTAACGGTTTAGCTTGCGACC
ACGGTGATTGACTGTGTCTGGGGATCAGCACGGACGAAAGGGGGTACTCG
GTGGAGAGATTCGGGGTGGTTTTTAATGTGAAGACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACGACAACAACGTTTGCTACCG
CGATTCGACTCGCGTGCCGTCCGTCGCTCACGGCCAAACCAAACCATGTG
CCTAATTTGCCCTTGCGTGCTACTTACTGCGAGAGTCGAATCGAGTCGAG
TCGAGTTGCTGCCGGCCTGTAGATATCGAGAGTACGTACGTACGACCGTG
GAAGTCGCCCGCACGTTGCCGGCAAAAGGATGTCGTTTTCTGTTGTCCCT
GTTGGTCGTGGGCGGATGGGATGGGCAGCAGCACGAGTGCATTTTGCTTG
CGTTGGGCAGCGTTAAGTGACCAAAAAACAACAAAATACAGCGCAGGAAG
ATGTTTGCGCCCAGCTTTGCATGCAGCGCCTGCCCGGTTCCACGATCGCA
CCCCTGCTCCGGCGGCTCCTTTCCAACCTCTCGTATGTTTCGGTACGTTT
CCCAACGGCTTACCCCTGGCCTCGCGTCCCCTGGACCTTGTGCACTGCCG
TGTGAAGGTGGCACGTGAAGGTCTTGGGCCTGTCTTCGTCGAGCCCTAGG
ATAGGGGTGGGCCAGCCTCAGAGTCCTGTCGAGAAGAGCGGGTTGCAGAG
GTCGCCGTGGTTGCTGACCTGGGATAGCGCGGGAACTATTCAGGTCGGTG
CCAGCAACGTGAGGAGAGGGCGCAAAAAAGAAGGGGTGGTTTTGAGCACG
TACGAAGTACGTGTGATGCTTTGATTGGCTGCAATTTGTGGTATGTGGCT
GCTTTGCTTTGGAGGCTGTCTTCACCTTTCCTCCTGCTCTGCTTTGCGAC
GGATGCCGGTTGGCGGCTGCAGATGACCACGTGGAGCGGGAAGGGAACAC
GCTTGTCGTTCGGGCCGCAGGTGAAGGAAGGCGACGTGGTCACGGTGGAA
GTCGACGCTGTCAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10627:203..3016+

>mRNA_S-firma_F_contig10627.856.1 ID=mRNA_S-firma_F_contig10627.856.1|Name=mRNA_S-firma_F_contig10627.856.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1494bp|location=Sequence derived from alignment at S-firma_F_contig10627:203..3016+ (Sphaerotrichia firma ET2_F female)
GACAACAAGGCCAAGATTTGGGTGGTGCGCCTCCTCACCTCGCTGCTGCA
GAGCGCCTGCCCGCCCAAGGACAACAAGGCCAAGATTTGGGTGGTGCGCC
TCCTCACCTCGCTGCTGCAGAGCGCCTGCCCGCCCAAGCGTCCGTCGTCG
GCGTCGGCGGGCGCAGCGGGCGCAGCGGGCGCAGCGGCGGCCACCCCCGG
CGAGACAGAAGACCTGCCCGGCGTCGGTGTCGGCCGGCTGGGAGACATGT
TCGAGCCCAAGGGGGCCGTGTCCATTCTGCTGGATTTGGCGGAGAAGGAG
GCCAAGCTCGAGGAAGACAGGGGGGCCGACGCCAGGAGCCCCCTGCTGCA
GGCGCTGGTCCAGCGTCCGTCGTCGGCGTCGGCGGGCGCAGCGGGCGCAG
CGGGCGCAGCGGCGGCCACCCCCGGCGAGACAGAAGACCTGCCCGGCGTC
GGTGTCGGCCGGCTGGGAGACATGTTCGAGCCCAAGGGGGCCGTGTCCAT
TCTGCTGGATTTGGCGGAGAAGGAGGCCAAGCTCGAGGAAGACAGGGGGG
CCGACGCCAGGAGCCCCCTGCTGCAGGCGCTGGTCCAGGCTTGCGTGGTG
GCCGACGAGTGCAACAAGAAGAGGGGGCTTGGCGCTGTTGCGAGAGACGG
CTTGCGTGGTGGCCGACGAGTGCAACAAGAAGAGGGGGCTTGGCGCTGTT
GCGAGAGACGGCGCAGGCGCTTCCTTCCCCGAGTGGCCGAGACGCGCCAA
CACCACGAGGTCCGACGACAACCGGTCCGTGCGCACGGAGCCGGGGTCTC
CTGTTGTGAGGTCCCCGCTCCTGGCGGTGCCGGGCTACGTGGCTCCCGCG
GGCACGGGCGGGGCCAGGATGATACGGCGCAGGCGCTTCCTTCCCCGAGT
GGCCGAGACGCGCCAACACCACGAGGTCCGACGACAACCGGTCCGTGCGC
ACGGAGCCGGGGTCTCCTGTTGTGAGGTCCCCGCTCCTGGCGGTGCCGGG
CTACGTGGCTCCCGCGGGCACGGGCGGGGCCAGGATGATACGGTGGCACG
TGAAGGTCTTGGGCCTGTCTTCGTCGAGCCCTAGGATAGGGGTGGGCCAG
CCTCAGAGTCCTGTCGAGAAGAGCGGGTTGCAGAGGTCGCCGTGGTTGCT
GACCTGGGATAGCGCGGGAACTATTCAGGTGGCACGTGAAGGTCTTGGGC
CTGTCTTCGTCGAGCCCTAGGATAGGGGTGGGCCAGCCTCAGAGTCCTGT
CGAGAAGAGCGGGTTGCAGAGGTCGCCGTGGTTGCTGACCTGGGATAGCG
CGGGAACTATTCAGATGACCACGTGGAGCGGGAAGGGAACACGCTTGTCG
TTCGGGCCGCAGGTGAAGGAAGGCGACGTGGTCACGGTGGAAGTCGACGC
TGTCATGACCACGTGGAGCGGGAAGGGAACACGCTTGTCGTTCGGGCCGC
AGGTGAAGGAAGGCGACGTGGTCACGGTGGAAGTCGACGCTGTC
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