mRNA_S-firma_F_contig10626.855.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10626.855.1
Unique NamemRNA_S-firma_F_contig10626.855.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10626.855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10626contigS-firma_F_contig10626:266..4676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size676
Cds size675
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.8093452-CDS-S-firma_F_contig10626:265..3381622815601.8093452-CDS-S-firma_F_contig10626:265..338Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 266..338 +
1696949446.1322534-CDS-S-firma_F_contig10626:265..3381696949446.1322534-CDS-S-firma_F_contig10626:265..338Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 266..338 +
1622815601.8258495-CDS-S-firma_F_contig10626:1443..15151622815601.8258495-CDS-S-firma_F_contig10626:1443..1515Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 1444..1515 +
1696949446.14178-CDS-S-firma_F_contig10626:1443..15151696949446.14178-CDS-S-firma_F_contig10626:1443..1515Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 1444..1515 +
1622815601.837727-CDS-S-firma_F_contig10626:2012..20841622815601.837727-CDS-S-firma_F_contig10626:2012..2084Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 2013..2084 +
1696949446.1515815-CDS-S-firma_F_contig10626:2012..20841696949446.1515815-CDS-S-firma_F_contig10626:2012..2084Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 2013..2084 +
1622815601.8500512-CDS-S-firma_F_contig10626:2873..29451622815601.8500512-CDS-S-firma_F_contig10626:2873..2945Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 2874..2945 +
1696949446.1630979-CDS-S-firma_F_contig10626:2873..29451696949446.1630979-CDS-S-firma_F_contig10626:2873..2945Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 2874..2945 +
1622815601.8614058-CDS-S-firma_F_contig10626:3298..33701622815601.8614058-CDS-S-firma_F_contig10626:3298..3370Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 3299..3370 +
1696949446.1732993-CDS-S-firma_F_contig10626:3298..33701696949446.1732993-CDS-S-firma_F_contig10626:3298..3370Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 3299..3370 +
1622815601.8775513-CDS-S-firma_F_contig10626:4131..42121622815601.8775513-CDS-S-firma_F_contig10626:4131..4212Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 4132..4212 +
1696949446.1876564-CDS-S-firma_F_contig10626:4131..42121696949446.1876564-CDS-S-firma_F_contig10626:4131..4212Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 4132..4212 +
1622815601.8913999-CDS-S-firma_F_contig10626:4443..46761622815601.8913999-CDS-S-firma_F_contig10626:4443..4676Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 4444..4676 +
1696949446.198157-CDS-S-firma_F_contig10626:4443..46761696949446.198157-CDS-S-firma_F_contig10626:4443..4676Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10626 4444..4676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10626.855.1prot_S-firma_F_contig10626.855.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10626 266..4676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10626.855.1

>prot_S-firma_F_contig10626.855.1 ID=prot_S-firma_F_contig10626.855.1|Name=mRNA_S-firma_F_contig10626.855.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=225bp
GPISEALGTLAKLSKLNLGFNELTGCIPEALSAVTNLKKMSLNTNHLTGP
IPAALGALTNLTSLSLINNQLAGPIPEALGALASLAELDLSRNQLTGSIP
EALGALTNLTRLQLQSNQLSGTVPFSLWKLDSLTWAHVTHNRLTHFTDPE
EKTASMPVVLDCMSKRQWYTADNPWEFPPAAVMVNGPESIRKFYGTWEQC
DFALVEIHALKVVFVGAYGAGKTR*
back to top

mRNA from alignment at S-firma_F_contig10626:266..4676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10626.855.1 ID=mRNA_S-firma_F_contig10626.855.1|Name=mRNA_S-firma_F_contig10626.855.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4411bp|location=Sequence derived from alignment at S-firma_F_contig10626:266..4676+ (Sphaerotrichia firma ET2_F female)
GGACCCATAAGCGAGGCGCTGGGGACTCTCGCCAAACTTTCTAAGCTTAA
CCTTGGGTTCAACGAGCTTACAGGTACCGTAAATGTGCCGGCGATCGCGC
AGTGTTTGATAGACTATTGAATACTTCCTACGTTTATTTTTTATCGAAGA
GGGACGCGATAGACACATGTGTGGTATACCCGACCACTGCTGTTGTGTGG
AAATCGAACTGAACATATTGGTTCTGCTTTTATTGCGCACGCACAACCCT
GTGCGATACCTCCCCCATCTGCGTTAACACACGGTACTCTGAGAGGAGCT
GCGAACGTTTCATAAAAGGGGCGGGGAGAGTTAGCAACTGTTTGATTAGG
TCCTCGTGCGCGACAGCTGAACATGAGTTTTTGGTTCGACTGTGTGCAAA
GAAAAGCGGATAGATGGCACGTGTTTGCCATAGTTATCGAGTTGGACTCG
AGCTTGTGTCGTCGGTGTTTAGATTGGCGCAAAGCTGCAACATGTGTGTC
TTGTTTTGTACCTAGATGTTGATCTGCCGATGTACCGCAATACTGCCATA
CACATCCAACTGAGCTCAGACGACATACCGTACCACGAGACACCCACCCA
AACGGCAGCGGGTTAAGATTTTCCCCTGGACCACCTCTCGACATCACGGA
ACATCACCGCCAAAAATATGTTTTTTGCAGTCGGAGCTGTCGCACACTGT
GCGATATCCCGGCTCCTGTACGAAGATGCAACTACGAAGTATATAAACGT
ATGCACAACTTCATTATCGCTTGTTTTTTTACGTACTGTAGGGGTGCGAT
AGCCCTGCCCCTTGTGACAGATCGTACTTTACGGTAGGTCAGCTCATTTA
GCTTTGCTCGCCGTTTTGTCCCGCCTAGGCATCTACAAGTGCATTTTTGG
ACTAGGCTTCTAGGTGCAGTTTGGGACAGAACCGAAGGTAGTGCACGCCT
CACATTGATAGGTTTGCTGTGGAGCAGGGCAAGGATTGTCCAGCTTTGTA
ATAGGCTACCAGCATCTCATGGATCGATGCGCTGGTCACTACGTGCCATA
ACGCGTTTTCCCCAGTTTTAGGAAGATGCATCCTGCCTACCCCAGGGCGG
GACGATGATGCTGAAGACCCGGCGTATGAACTGCTGTCGATGTATGTTTC
GTGTTTTCGCAAATGTTCTTTTGTGCAGGATGCATCCCGGAAGCACTATC
AGCTGTCACCAACCTCAAGAAGATGAGCCTGAACACCAACCACCTTACAG
GTGAACCAGCCAATTCTTTGTCTGATTCCCAGCCTAAGCGTTTAGCTGAG
TTAGCCTAAGGCGAGCGCTTTACATTGAACTCAGTGCAGCAAATTCCTGC
CACAAGGATAGGCAGAAGGTAGCGCATGCATCTGCAAGGCTGGTAGTGAA
ACAGAGCAAGGTTATCCGGCGTGCTGAAAATTCTGAGCTCATTCGAAGTG
GTTCCTGCTCAAGAATCCAGGGCTCAATCGCACAGTGAAGAATCATCGTA
CTTTTATAATAGGGCACCGTAGGAGGGGGTCCAACACCCCGCTCCTGTGT
GACCCCGAGTGGGTCGTCTAGCTAGTCGTAGTGAAGGATGGGGGCCAGTG
GGGCAGTCGACAGAAACACTCATGGGAAGGAGGAAAAAAAAAAGAGAGAG
ACGTAACCTGCCTACCATGCAGATGATGTATATAGAAACCCCAGCTTTAT
CATTGTTTACTTTGCTCAAAATGTTGTACTCGTGTTATTGTGCGCAGGGC
CCATTCCGGCGGCCCTGGGAGCTCTCACCAACCTGACGTCGCTTTCTCTC
ATCAATAACCAGCTTGCAGGTAACGGTCTTGTCCCGCGTGTATCTTGAGA
AAGTATTGGCCTGCTGGCGAGTAGAGTTTGTGGATCAAAGCTGAACTACG
TCAGGAAAGTAAAGGAAACGTCGTGCACATCTCTTTGTTGGAGCTAGGCT
GATTGTGGAACAGTGCAAGCTTAGCTTTCTTGTGGAGAGCTCCCAACGCG
TCGGGAATGGCTCGCGTACTAGAACCTCAGCGCTTTCGAAACCTTCAGCA
TTGTTCCGCCTTCTAGGAGATGCGTTCTCTGCTCATGCCTTGCGGGACCG
ATGCCCTCTTCACGTCGAATACTGCCGTCTGTTGTTTGTGTTTTCCGTTG
CTTGGTGGTGCAGAATATATTCCGGAGGCGATAGGAGCTCTCACCAACCT
CAAGCACCTTCACCTCCAAGGCAACCAGCTTACAGGTAATCCAGTCAGAT
ATTTTGTTAACTACCTGTCCGCCTGCGTTTCTAGAACATGCAATGCCCTC
TGGCGAGTGGGCTTCTAGATATCAGCGGAGCAGCACCCCAGGTAGGGTGA
CGCAAAAGGTGGTGCATGCCTTTCAAGGGTATGGAGAGGTGCAACACGGA
AACTTCTCTCCAGTTTGCTGAGAGCTCCCAGCGCCTCGAGTATCGGTCCT
GCACGACAATCGATCCTGACGACCAAGCCCTACGAATACCGCACTCACGC
ATAAGTCCGGATGCGCTTCTGCCTATCGTGAGCGTGATCGATGACATAGA
AGACTCTTCTCCATCGAGTATGACATTTTCGTTTTTGTTCCATTGGTTCC
TTGTGCAGGGCCCATTCCGGAGGCACTAGGAGCTCTCGCCAGCCTCGCGG
AGCTGGACCTAAGTCGCAACCAGCTTACAGGTAAACGAGGGTACTCTTGT
TTCTGCCTTCCTGTTTTATTCCACCTAGGCATCTCCATTCAAAATATGAA
ATACCAGGTAGTGATAATGCCGCATAGGGTAGTCCCTGTTTCATCGAGCT
TTTCGTTGACCATGTCACGTTCCACTGTGGATGCAATGTAGGAGTACAGT
AACCCTGTGATGGGAGTGAAGACAGCGACCACTTTAGCGCAGGATAGTTG
TTCGCTGAGCTTGGGGCTATTTGAATGGGGGCAAGATGCCTACTGCGACT
CTCTTCTTGCACGTGAACGGCAGTGCGCGCCCCTTGCATATGGTGGCCGA
TTGTTGTTTGTGTTTTCCCATTTGCTGGTACAGGATCCATTCCGGAGGCG
TTGGGAGCTCTCACCAACCTCACGCGTCTTCAACTCCAAAGCAACCAGCT
TTCAGGTAATCCAGTCAGGCATGTTCGTTCAGCCTACAGTACTTTTCCGG
AGGACGGTCATACGTGAGTGGGAGCGATGATTTGTTAAGACCACTTTGTT
CTTATGCAGGGGCAATTCCGCCCCCCTCTTTTGGACGTTCGCGGATGTTT
CGTGCAGCTTATGGTATACGTTGTCCGTTAGCTTGCCGAGCTGGCGAAGG
GCCTCCGAAGTTTCTCCTGAGTTGTGGAGGCACAGCTAGTTGTTTCGGAG
GTTTTCGATGTCGCTCTCGTTTCTTGACCACATTACCTCGCAACGCGCGG
GCAGAGCAAGCGTTCCAGCAGCCAACGGACATACCTTGAGCTTATTTCCC
TTTCCCTCTCACCGGTATGGTGATAGCCTCCAGCGTATGTAGGTTGGCGC
AAAGTCTAGAAACCTGCGTCGAAAAGGCTCGTACACTCAGAAAAAGTACC
CACAAGTCACCGAAAAGCCATCGTTGGCACATCACGTGAAAGTACATGTC
GACGTGTTCATTCGATCATCGGTGTTGAACAAAAAGAAGCGCAGAACGTG
ACATCTTCCGCGGTTTTTCTCCAGAGAAACTCAACCTGTTTCCTGCGGTT
AGACGGGCCGAGCTCCTCCAATGCCGCAGGACTTTTTCAGCGCTGTTTAG
TTGAAGCAAGGTTGAGGTTGGATCTCTTTTCCCGGATATGATCTCGCATG
CTTGTTCTGAAGCTGAGAGTGGTGGGATTTTGCCTGCCCATATGCCGTTT
GTTCCCCCTTCGGCAGGAACCGTGCCGTTCAGCTTATGGAAGCTTGACTC
ATTAACTTGGGCGCACGTCACTCACAACCGGTTGACTCACTTCACTGGTG
AGGAATGATCGTTTGTCGGCGCTGTGGTCTCGTGTCGGAGATCGGAAACG
TGTGAGAGGGGGAAATGAGGTACAGTGAGAGTGCTTTGTGGGGGAAGGAA
CGGCTTGCGATACATACATGGAAACCTAGGCGTTCAACATTCCTTCATCG
TTGGCAACTGTGACAGTACAACGTTTTGCCGCACTAACTCGAGATCCAAC
AACAACGTCCTCCCCATCACAACGATAGATCCCGAAGAGAAGACCGCTTC
GATGCCTGTGGTGCTGGACTGCATGTCGAAACGGCAATGGTACACCGCGG
ACAACCCGTGGGAGTTTCCCCCCGCGGCCGTGATGGTCAACGGTCCGGAG
AGCATCCGAAAATTCTACGGCACCTGGGAGCAGTGCGATTTCGCTCTCGT
AGAGATCCATGCCCTCAAAGTGGTGTTTGTCGGGGCCTATGGGGCTGGCA
AGACAAGGTGA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10626:266..4676+

>mRNA_S-firma_F_contig10626.855.1 ID=mRNA_S-firma_F_contig10626.855.1|Name=mRNA_S-firma_F_contig10626.855.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1350bp|location=Sequence derived from alignment at S-firma_F_contig10626:266..4676+ (Sphaerotrichia firma ET2_F female)
GGACCCATAAGCGAGGCGCTGGGGACTCTCGCCAAACTTTCTAAGCTTAA
CCTTGGGTTCAACGAGCTTACAGGGACCCATAAGCGAGGCGCTGGGGACT
CTCGCCAAACTTTCTAAGCTTAACCTTGGGTTCAACGAGCTTACAGGATG
CATCCCGGAAGCACTATCAGCTGTCACCAACCTCAAGAAGATGAGCCTGA
ACACCAACCACCTTACAGGATGCATCCCGGAAGCACTATCAGCTGTCACC
AACCTCAAGAAGATGAGCCTGAACACCAACCACCTTACAGGGCCCATTCC
GGCGGCCCTGGGAGCTCTCACCAACCTGACGTCGCTTTCTCTCATCAATA
ACCAGCTTGCAGGGCCCATTCCGGCGGCCCTGGGAGCTCTCACCAACCTG
ACGTCGCTTTCTCTCATCAATAACCAGCTTGCAGGGCCCATTCCGGAGGC
ACTAGGAGCTCTCGCCAGCCTCGCGGAGCTGGACCTAAGTCGCAACCAGC
TTACAGGGCCCATTCCGGAGGCACTAGGAGCTCTCGCCAGCCTCGCGGAG
CTGGACCTAAGTCGCAACCAGCTTACAGGATCCATTCCGGAGGCGTTGGG
AGCTCTCACCAACCTCACGCGTCTTCAACTCCAAAGCAACCAGCTTTCAG
GATCCATTCCGGAGGCGTTGGGAGCTCTCACCAACCTCACGCGTCTTCAA
CTCCAAAGCAACCAGCTTTCAGGAACCGTGCCGTTCAGCTTATGGAAGCT
TGACTCATTAACTTGGGCGCACGTCACTCACAACCGGTTGACTCACTTCA
CTGGAACCGTGCCGTTCAGCTTATGGAAGCTTGACTCATTAACTTGGGCG
CACGTCACTCACAACCGGTTGACTCACTTCACTGATCCCGAAGAGAAGAC
CGCTTCGATGCCTGTGGTGCTGGACTGCATGTCGAAACGGCAATGGTACA
CCGCGGACAACCCGTGGGAGTTTCCCCCCGCGGCCGTGATGGTCAACGGT
CCGGAGAGCATCCGAAAATTCTACGGCACCTGGGAGCAGTGCGATTTCGC
TCTCGTAGAGATCCATGCCCTCAAAGTGGTGTTTGTCGGGGCCTATGGGG
CTGGCAAGACAAGGTGAATCCCGAAGAGAAGACCGCTTCGATGCCTGTGG
TGCTGGACTGCATGTCGAAACGGCAATGGTACACCGCGGACAACCCGTGG
GAGTTTCCCCCCGCGGCCGTGATGGTCAACGGTCCGGAGAGCATCCGAAA
ATTCTACGGCACCTGGGAGCAGTGCGATTTCGCTCTCGTAGAGATCCATG
CCCTCAAAGTGGTGTTTGTCGGGGCCTATGGGGCTGGCAAGACAAGGTGA
back to top