mRNA_S-firma_F_contig10622.850.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10622.850.1
Unique NamemRNA_S-firma_F_contig10622.850.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10622.850.1 vs. uniprot
Match: A0A813ARJ6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ARJ6_9DINO)

HSP 1 Score: 317 bits (811), Expect = 3.020e-98
Identity = 184/471 (39.07%), Postives = 293/471 (62.21%), Query Frame = 1 
Query:    1 SETLKKRLTERWETIRRVLPPTFSGKFDREQFEIFLEANLLLLGFLSVCMGILLGIQWYASIRLRSALKAAAELD-EEAAEYGLPSEHRPNRMKVAWKRKWTHGSKSSRRCIKCICCGVLLAFILAIVLATLALYFATSCANFSSFSEDQSY-ENMGTDVFLHNSYTRGLTHVRPSVSLDTTAMYPTNTSVVFTKSAFRSGLQADGFPEVTNMSTL--YGFEAVPAAKTKVMGFDISCQLADLELALPPALVYSGNGFQESLSSPSLEFITISDRASVEYDLTLYQTVNRPRPKYVKMSTTSGPIDVAGALFGASGAVLVSDLGELSMKTSDAWCDEDTLGDSDFGVHMTSDRGSVSVEDSTFRNCDVFLEGSAALVFMDNVVMSNNGGGATLTVTGERGLIDLNNVQADVYAIQSDAGSVRVDSLNGTQ-FRVRGGAASTSGSVEALNLRMGA-GTVQAETDSGAITVHL 1395
            ++T++  +++ W+++RRVLP TF+GK+D+EQFE F+ +NLL LGF+++ +G++L  QW ++ RLR ALK  A+++  +  E GL    +P  +++ WK++WTHGSK SRR I C CC   +   L + +A L+LYF+TSCA+   +   ++   + G DVF+ +S+TRG+     SVS+ +++  P N +  + K AFR       FP +   +TL   G +A P A T+V+GFD+SCQ A++++ALPPA  Y GN F ES  SPS+  ++ S  ASV+ D+      +RPR + +  +++ GP D+AG L GA G  + + LG++S++  D  CD   LG+ D+GV +++ +G++ V  S FR+CDV L    +L  +   V++N  GG T+ + G +GLID+    ADV++++ D GSV + ++ G +  +V    A+ SG V    L M   G VQ ET SG I+V L
Sbjct:   81 ADTVQGYVSDNWDSVRRVLPSTFAGKYDKEQFEKFIASNLLALGFMALVVGLVLTAQWESARRLRVALKIEADIEGRDEMEEGLTE--KPGAVQMLWKQRWTHGSKQSRRVIMCTCCCTAVCVSLILTMAVLSLYFSTSCASIGEYKASRTLTSDDGMDVFVDSSFTRGVV----SVSVASSSTAP-NATFTYEKGAFRKQYADTSFPALETDTTLGAEGIDADPKAPTQVLGFDVSCQFANVDVALPPAARYGGNSFAESERSPSVTLVSSSGLASVQADVRSVPEADRPRLRRLVSASSDGPTDLAGLLVGAEGLQVSTTLGDISLEDVDGACDPALLGEPDYGVDLSTQKGAIIVSSSAFRDCDVKLSAVQSLTEVVGSVVTNTNGGGTMYILGTKGLIDIRRSTADVFSVRGDEGSVVMSNVTGREAVKV----ATASGRVTLSRLAMAQRGVVQVETSSGDISVSL 540
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BLAST of mRNA_S-firma_F_contig10622.850.1 vs. uniprot
Match: A0A5A8CWG0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CWG0_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-10
Identity = 32/76 (42.11%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 SETLKKRLTERWETIRRVLPPTFSGKFDREQFEIFLEANLLLLGFLSVCMGILLGIQWYASIRLRSALKAAAELDE 228
            ++T++ +L  +W+ IRR+LPP+FSGK+D+ QF+ F++ NL  +GF+++C GI+L IQ +A+ RLR  +K   ++++
Sbjct:  292 ADTVRDQLLAQWDDIRRILPPSFSGKYDQGQFQAFVDTNLKAIGFMALCAGIILLIQLWAATRLRGEIKRMNDVED 367
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10622.850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A813ARJ6_9DINO3.020e-9839.07Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A5A8CWG0_CAFRO1.400e-1042.11Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10622contigS-firma_F_contig10622:3378..5004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog157072.XP_008869058.1
PFAMsDUF4097
Max annot lvl2759|Eukaryota
Evalue1.67e-23
EggNOG OGs29PA7@1|root,2RWMR@2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Model size1398
Cds size1398
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10622.850.1prot_S-firma_F_contig10622.850.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10622 3378..5004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.432572-CDS-S-firma_F_contig10622:3377..34791622815601.432572-CDS-S-firma_F_contig10622:3377..3479Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10622 3378..3479 -
1696949445.89279-CDS-S-firma_F_contig10622:3377..34791696949445.89279-CDS-S-firma_F_contig10622:3377..3479Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10622 3378..3479 -
1622815601.4462922-CDS-S-firma_F_contig10622:3525..42991622815601.4462922-CDS-S-firma_F_contig10622:3525..4299Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10622 3526..4299 -
1696949445.9045978-CDS-S-firma_F_contig10622:3525..42991696949445.9045978-CDS-S-firma_F_contig10622:3525..4299Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10622 3526..4299 -
1622815601.4587634-CDS-S-firma_F_contig10622:4482..50041622815601.4587634-CDS-S-firma_F_contig10622:4482..5004Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10622 4483..5004 -
1696949445.9175615-CDS-S-firma_F_contig10622:4482..50041696949445.9175615-CDS-S-firma_F_contig10622:4482..5004Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10622 4483..5004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10622.850.1

>prot_S-firma_F_contig10622.850.1 ID=prot_S-firma_F_contig10622.850.1|Name=mRNA_S-firma_F_contig10622.850.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=466bp
SETLKKRLTERWETIRRVLPPTFSGKFDREQFEIFLEANLLLLGFLSVCM
GILLGIQWYASIRLRSALKAAAELDEEAAEYGLPSEHRPNRMKVAWKRKW
THGSKSSRRCIKCICCGVLLAFILAIVLATLALYFATSCANFSSFSEDQS
YENMGTDVFLHNSYTRGLTHVRPSVSLDTTAMYPTNTSVVFTKSAFRSGL
QADGFPEVTNMSTLYGFEAVPAAKTKVMGFDISCQLADLELALPPALVYS
GNGFQESLSSPSLEFITISDRASVEYDLTLYQTVNRPRPKYVKMSTTSGP
IDVAGALFGASGAVLVSDLGELSMKTSDAWCDEDTLGDSDFGVHMTSDRG
SVSVEDSTFRNCDVFLEGSAALVFMDNVVMSNNGGGATLTVTGERGLIDL
NNVQADVYAIQSDAGSVRVDSLNGTQFRVRGGAASTSGSVEALNLRMGAG
TVQAETDSGAITVHLA
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mRNA from alignment at S-firma_F_contig10622:3378..5004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10622.850.1 ID=mRNA_S-firma_F_contig10622.850.1|Name=mRNA_S-firma_F_contig10622.850.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1627bp|location=Sequence derived from alignment at S-firma_F_contig10622:3378..5004- (Sphaerotrichia firma ET2_F female)
TCCGAGACCCTGAAGAAGCGCCTCACGGAGCGGTGGGAAACCATTCGCCG
GGTGCTGCCGCCCACGTTTTCCGGCAAGTTTGACCGGGAGCAGTTTGAGA
TTTTCCTGGAGGCCAACCTCCTCCTCCTCGGCTTCCTGTCCGTGTGCATG
GGCATCCTGCTGGGCATCCAGTGGTACGCGTCCATCCGGCTGCGGTCGGC
ACTGAAGGCCGCTGCGGAGCTGGACGAGGAAGCAGCGGAGTACGGGCTGC
CGTCGGAGCACCGCCCCAACCGCATGAAGGTTGCGTGGAAGCGCAAGTGG
ACCCACGGCTCCAAGTCCAGCCGGCGGTGCATCAAGTGCATTTGCTGCGG
CGTCCTCCTGGCCTTTATCCTGGCCATTGTGTTGGCCACACTGGCACTGT
ACTTTGCAACGTCCTGTGCCAACTTCAGCTCCTTCTCTGAAGACCAGTCG
TACGAGAATATGGGGACGGACGTATTCCTCCACAACTCGTACACGCGTGG
CTTGACACACGTGCGTCCCTCTGTGTCTCCTCCCCGTCTTTTCCCCCCAC
CCCCCACCCCCCCCCCCCCCCACAAAACACAATCCCGTTCGACCCCCCGC
ACCTACCCCCCCCACAACACCACTCCAGNNNNNNNNNNCCCGCTCGGTCC
CCCCCCCGTCTGTCCCGCCCCCACCCCCCCCCCCCCCCCCCACCCCAAAA
CTCAGGTCTCCCTGGACACCACCGCGATGTACCCCACCAACACCTCCGTC
GTGTTCACAAAGTCGGCGTTCCGGAGTGGCCTCCAAGCCGACGGCTTCCC
GGAGGTCACCAACATGTCCACCCTGTATGGGTTTGAGGCGGTGCCCGCCG
CCAAGACCAAGGTCATGGGGTTTGACATTTCCTGCCAGCTGGCGGACCTG
GAGCTGGCGCTGCCCCCCGCGCTGGTGTACTCCGGTAACGGCTTCCAGGA
GTCCCTGTCTAGCCCCAGCCTGGAGTTCATCACCATCAGCGACCGGGCCA
GCGTTGAGTACGACCTCACGCTGTACCAGACGGTGAACCGCCCCCGTCCC
AAGTACGTCAAAATGTCCACCACGTCGGGCCCCATTGACGTCGCCGGTGC
GCTTTTTGGCGCCAGCGGCGCCGTCCTCGTCTCCGACCTGGGGGAGTTGT
CCATGAAGACGTCCGACGCGTGGTGCGACGAGGACACCCTGGGCGACTCA
GACTTTGGCGTCCACATGACGTCTGACCGCGGCAGCGTGTCCGTGGAGGA
CTCCACCTTCCGCAACTGCGACGTGTTCCTGGAGGGCAGCGCCGCCCTCG
TGTTCATGGACAACGTGGTCATGAGCAACAACGGCGGCGGGGCCACCCTC
ACCGTCACCGGCGAGCGGGGCCTCATTGACCTCAACAACGTCCAAGCCGA
CGTGTACGCCATCCAGTCCGACGCTGGCAGCGTCCGCGTGGACTCCCTCA
ACGGCACTCAGTTCCGGGTGCGTGGGGGGGTGTGCTGTTGTGGGTGTTGG
GGTTTGACGGCGTGTGTGTGTACAGGCGGCGTCGACGAGTGGGTCTGTGG
AAGCGTTGAACCTCCGCATGGGGGCGGGCACCGTGCAAGCGGAAACGGAT
TCCGGCGCCATCACCGTCCACTTGGCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10622:3378..5004-

>mRNA_S-firma_F_contig10622.850.1 ID=mRNA_S-firma_F_contig10622.850.1|Name=mRNA_S-firma_F_contig10622.850.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2796bp|location=Sequence derived from alignment at S-firma_F_contig10622:3378..5004- (Sphaerotrichia firma ET2_F female)
TCCGAGACCCTGAAGAAGCGCCTCACGGAGCGGTGGGAAACCATTCGCCG
GGTGCTGCCGCCCACGTTTTCCGGCAAGTTTGACCGGGAGCAGTTTGAGA
TTTTCCTGGAGGCCAACCTCCTCCTCCTCGGCTTCCTGTCCGTGTGCATG
GGCATCCTGCTGGGCATCCAGTGGTACGCGTCCATCCGGCTGCGGTCGGC
ACTGAAGGCCGCTGCGGAGCTGGACGAGGAAGCAGCGGAGTACGGGCTGC
CGTCGGAGCACCGCCCCAACCGCATGAAGGTTGCGTGGAAGCGCAAGTGG
ACCCACGGCTCCAAGTCCAGCCGGCGGTGCATCAAGTGCATTTGCTGCGG
CGTCCTCCTGGCCTTTATCCTGGCCATTGTGTTGGCCACACTGGCACTGT
ACTTTGCAACGTCCTGTGCCAACTTCAGCTCCTTCTCTGAAGACCAGTCG
TACGAGAATATGGGGACGGACGTATTCCTCCACAACTCGTACACGCGTGG
CTTGACACACGTGCGTCCCTCTTCCGAGACCCTGAAGAAGCGCCTCACGG
AGCGGTGGGAAACCATTCGCCGGGTGCTGCCGCCCACGTTTTCCGGCAAG
TTTGACCGGGAGCAGTTTGAGATTTTCCTGGAGGCCAACCTCCTCCTCCT
CGGCTTCCTGTCCGTGTGCATGGGCATCCTGCTGGGCATCCAGTGGTACG
CGTCCATCCGGCTGCGGTCGGCACTGAAGGCCGCTGCGGAGCTGGACGAG
GAAGCAGCGGAGTACGGGCTGCCGTCGGAGCACCGCCCCAACCGCATGAA
GGTTGCGTGGAAGCGCAAGTGGACCCACGGCTCCAAGTCCAGCCGGCGGT
GCATCAAGTGCATTTGCTGCGGCGTCCTCCTGGCCTTTATCCTGGCCATT
GTGTTGGCCACACTGGCACTGTACTTTGCAACGTCCTGTGCCAACTTCAG
CTCCTTCTCTGAAGACCAGTCGTACGAGAATATGGGGACGGACGTATTCC
TCCACAACTCGTACACGCGTGGCTTGACACACGTGCGTCCCTCTGTCTCC
CTGGACACCACCGCGATGTACCCCACCAACACCTCCGTCGTGTTCACAAA
GTCGGCGTTCCGGAGTGGCCTCCAAGCCGACGGCTTCCCGGAGGTCACCA
ACATGTCCACCCTGTATGGGTTTGAGGCGGTGCCCGCCGCCAAGACCAAG
GTCATGGGGTTTGACATTTCCTGCCAGCTGGCGGACCTGGAGCTGGCGCT
GCCCCCCGCGCTGGTGTACTCCGGTAACGGCTTCCAGGAGTCCCTGTCTA
GCCCCAGCCTGGAGTTCATCACCATCAGCGACCGGGCCAGCGTTGAGTAC
GACCTCACGCTGTACCAGACGGTGAACCGCCCCCGTCCCAAGTACGTCAA
AATGTCCACCACGTCGGGCCCCATTGACGTCGCCGGTGCGCTTTTTGGCG
CCAGCGGCGCCGTCCTCGTCTCCGACCTGGGGGAGTTGTCCATGAAGACG
TCCGACGCGTGGTGCGACGAGGACACCCTGGGCGACTCAGACTTTGGCGT
CCACATGACGTCTGACCGCGGCAGCGTGTCCGTGGAGGACTCCACCTTCC
GCAACTGCGACGTGTTCCTGGAGGGCAGCGCCGCCCTCGTGTTCATGGAC
AACGTGGTCATGAGCAACAACGGCGGCGGGGCCACCCTCACCGTCACCGG
CGAGCGGGGCCTCATTGACCTCAACAACGTCCAAGCCGACGTGTACGCCA
TCCAGTCCGACGCTGGCAGCGTCCGCGTGGACTCCCTCAACGGCACTCAG
TTCCGGGTGCGTGGGGGGGTCTCCCTGGACACCACCGCGATGTACCCCAC
CAACACCTCCGTCGTGTTCACAAAGTCGGCGTTCCGGAGTGGCCTCCAAG
CCGACGGCTTCCCGGAGGTCACCAACATGTCCACCCTGTATGGGTTTGAG
GCGGTGCCCGCCGCCAAGACCAAGGTCATGGGGTTTGACATTTCCTGCCA
GCTGGCGGACCTGGAGCTGGCGCTGCCCCCCGCGCTGGTGTACTCCGGTA
ACGGCTTCCAGGAGTCCCTGTCTAGCCCCAGCCTGGAGTTCATCACCATC
AGCGACCGGGCCAGCGTTGAGTACGACCTCACGCTGTACCAGACGGTGAA
CCGCCCCCGTCCCAAGTACGTCAAAATGTCCACCACGTCGGGCCCCATTG
ACGTCGCCGGTGCGCTTTTTGGCGCCAGCGGCGCCGTCCTCGTCTCCGAC
CTGGGGGAGTTGTCCATGAAGACGTCCGACGCGTGGTGCGACGAGGACAC
CCTGGGCGACTCAGACTTTGGCGTCCACATGACGTCTGACCGCGGCAGCG
TGTCCGTGGAGGACTCCACCTTCCGCAACTGCGACGTGTTCCTGGAGGGC
AGCGCCGCCCTCGTGTTCATGGACAACGTGGTCATGAGCAACAACGGCGG
CGGGGCCACCCTCACCGTCACCGGCGAGCGGGGCCTCATTGACCTCAACA
ACGTCCAAGCCGACGTGTACGCCATCCAGTCCGACGCTGGCAGCGTCCGC
GTGGACTCCCTCAACGGCACTCAGTTCCGGGTGCGTGGGGGGGCGGCGTC
GACGAGTGGGTCTGTGGAAGCGTTGAACCTCCGCATGGGGGCGGGCACCG
TGCAAGCGGAAACGGATTCCGGCGCCATCACCGTCCACTTGGCGGCGGCG
TCGACGAGTGGGTCTGTGGAAGCGTTGAACCTCCGCATGGGGGCGGGCAC
CGTGCAAGCGGAAACGGATTCCGGCGCCATCACCGTCCACTTGGCG
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