mRNA_S-firma_F_contig10620.849.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10620.849.1
Unique NamemRNA_S-firma_F_contig10620.849.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10620.849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10620contigS-firma_F_contig10620:2759..4694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size849
Cds size573
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.322827-UTR-S-firma_F_contig10620:2758..28821622815601.322827-UTR-S-firma_F_contig10620:2758..2882Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10620 2759..2882 -
1696949445.8045788-UTR-S-firma_F_contig10620:2758..28821696949445.8045788-UTR-S-firma_F_contig10620:2758..2882Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10620 2759..2882 -
1622815601.3348393-UTR-S-firma_F_contig10620:3167..31831622815601.3348393-UTR-S-firma_F_contig10620:3167..3183Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10620 3168..3183 -
1696949445.8158906-UTR-S-firma_F_contig10620:3167..31831696949445.8158906-UTR-S-firma_F_contig10620:3167..3183Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10620 3168..3183 -
1622815601.3844357-UTR-S-firma_F_contig10620:4292..43341622815601.3844357-UTR-S-firma_F_contig10620:4292..4334Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10620 4293..4334 -
1696949445.8581774-UTR-S-firma_F_contig10620:4292..43341696949445.8581774-UTR-S-firma_F_contig10620:4292..4334Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10620 4293..4334 -
1622815601.3946745-UTR-S-firma_F_contig10620:4600..46941622815601.3946745-UTR-S-firma_F_contig10620:4600..4694Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10620 4601..4694 -
1696949445.8667734-UTR-S-firma_F_contig10620:4600..46941696949445.8667734-UTR-S-firma_F_contig10620:4600..4694Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10620 4601..4694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.3454912-CDS-S-firma_F_contig10620:3183..32471622815601.3454912-CDS-S-firma_F_contig10620:3183..3247Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10620 3184..3247 -
1696949445.828417-CDS-S-firma_F_contig10620:3183..32471696949445.828417-CDS-S-firma_F_contig10620:3183..3247Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10620 3184..3247 -
1622815601.3575504-CDS-S-firma_F_contig10620:3421..36891622815601.3575504-CDS-S-firma_F_contig10620:3421..3689Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10620 3422..3689 -
1696949445.8368788-CDS-S-firma_F_contig10620:3421..36891696949445.8368788-CDS-S-firma_F_contig10620:3421..3689Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10620 3422..3689 -
1622815601.373072-CDS-S-firma_F_contig10620:4051..42921622815601.373072-CDS-S-firma_F_contig10620:4051..4292Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10620 4052..4292 -
1696949445.8467503-CDS-S-firma_F_contig10620:4051..42921696949445.8467503-CDS-S-firma_F_contig10620:4051..4292Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10620 4052..4292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10620.849.1prot_S-firma_F_contig10620.849.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10620 3184..4292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10620.849.1

>prot_S-firma_F_contig10620.849.1 ID=prot_S-firma_F_contig10620.849.1|Name=mRNA_S-firma_F_contig10620.849.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=191bp
MAYLGQAVHLVPVKPDMIVYVRRHDPSNTGVDASNPPQWGLVSGEGPEGV
IVVEGFAFDRQQVLVMGAHQYAIDMLSKARGNTDMALKMMSAPAYQLSFL
ESLREAFWTPQQMQELCNISSQLHKEGRVSPLGDVSPLGDEYDDAANFGV
EGKRFADVVDALHRFKPSRRLGVETSGTPAGSGGASSGGS*
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mRNA from alignment at S-firma_F_contig10620:2759..4694-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10620.849.1 ID=mRNA_S-firma_F_contig10620.849.1|Name=mRNA_S-firma_F_contig10620.849.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1936bp|location=Sequence derived from alignment at S-firma_F_contig10620:2759..4694- (Sphaerotrichia firma ET2_F female)
GGTCGGACAAGCGCATCAGGCGCACGACATTCTCAACGTGTACTGGAAGA
AGCAGTGGTCTCCCAGCGCACGCGCGACCGAGGCAGCGCGACTGGTGAGT
GAGGGCGTTCCTGTGGAACAGAGAAACTGAATCTGAACTCACCTGCAAGG
AATACACGCGAGTGCCCGCGTACGGCACAGAAACATTCGTCGGTAGTTAG
ACCCATCAATTGAGCACACGAAATCAAGACGGTGTGAGAGTCTGCCGAGA
AACCGCTGACAGGCTCGGTTCTCACGAACTGTGTGACGAGATTGCTCCCA
ATCATCACGCCTCTCCCATCCCCCCATCCCTCCGTTGGTTCCTTCGCTCG
CTGCGCACAGGATCACGTGTGGCTGCCCACCCAACAATATCCGGACGAGC
TCATGGCGTACCTCGGGCAGGCCGTACACCTGGTACCGGTCAAGCCCGAC
ATGATCGTCTACGTGCGACGGCATGATCCCTCAAACACAGGCGTTGACGC
GTCAAACCCTCCTCAGTGGGGGTTGGTCTCGGGCGAGGGTCCGGAGGGCG
TCATCGTGGTTGAAGGCTTCGCGTTTGACCGCCAACAAGTGCTGGTGATG
GGTGCCCACCAGTACGCTATCGACATGTTGTCAAAAGCCCGCGGTGAGTA
CACAGTTGTTTTTCTGTCGCGAGAGCTCAGCATTTTGGGGGTTTACTTGC
AACACAGCGTGCTGGAGCCACACTGGGGATGATTTGCTGTGTATCCAGCC
GGACGTTCTTGAGCAGGACATAAGGCAGAGAACGTTTCACCTTGAAATGT
TTCAGATAATGTACCAGTCCTGTGAAGTGAGCTGCTGGCCTTAGAACTCG
CCATATATTTGAGCAGGATGGTACCAGGTAGATTGGTTTGCGCTGGTTGT
CATGTTTCGCTTGGTTTCGCGCTGCTTACTTCATTACGGGGGCGGGGTAG
CAACTTAAACAGGTTCGGCTGGCCCCTCCTTGTCCTATTTCGATTGTCGT
CGCAGGCAACACCGACATGGCGTTGAAGATGATGTCGGCGCCAGCGTATC
AATTGTCCTTCTTAGAGAGCTTACGGGAGGCGTTTTGGACTCCACAACAA
ATGCAAGAGCTCTGCAACATATCGTCGCAGCTCCACAAGGAAGGGCGTGT
GTCGCCCCTAGGCGATGTGTCGCCCCTAGGCGATGAGTACGACGATGCTG
CCAACTTCGGCGTCGAAGGGAAGCGCTTCGCCGACGTCGTCGACGCGCTT
CATCGCTTCAAACCATCGAGGAGGTGAGTCCACAACTTCACTGCTGCTCC
TTGCTGCCGATATTAGCTTTGCCTGTTTTCGTTGTCCTTCGGGGCATGCA
CTCCTGAGCGAAAAAGTCGCCGTTCACACATTCATGATAGGTCGTACTGA
GCGTTCACCTCGGCGCACGTCTTGGAATTATGAAATGTACTTATCAGGTT
GGGGGTTGAGACTTCGGGGACGCCGGCAGGGAGCGGTGGTGCATCTTCGG
GCGGGAGCTGAGGCGAGGGCAGCACAGGTACGGGACAACGCGGGCGACTC
TGTAATTCAACTATCTATCCACGTGTACCTCGAAATGCTGACTTGGAGTT
GATAGTTGAGTTTTCTTTCGCCCAACCTGTCTGTCGGGCTTTGAAGCGAG
CTTGCGGGTGCACAGCGAGCCCGGTGAAATATAATGCACTACTACCTGCT
GCTCCAAAAAACGGTTTCCGCCACCCTGAACGTATTGAAAGGAGCGCGGC
TCGCGTTTGATCTATCAAATTTACGATGCCTCTACGCCCCCCCCCCTCCC
CCCTTGCCTCAGGGTCGGCGATGAACGAGTCAAGTGTGCGAGCCGATGCA
GAAACGCTGGGCGATTTTTCGGTGCGTTTTCAGCGTGTTGCTTTGCTTGC
GTGCCGCCGGCAGCCCGGTACCGAAGATCGGCTAGT
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Coding sequence (CDS) from alignment at S-firma_F_contig10620:2759..4694-

>mRNA_S-firma_F_contig10620.849.1 ID=mRNA_S-firma_F_contig10620.849.1|Name=mRNA_S-firma_F_contig10620.849.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1146bp|location=Sequence derived from alignment at S-firma_F_contig10620:2759..4694- (Sphaerotrichia firma ET2_F female)
ATGGCGTACCTCGGGCAGGCCGTACACCTGGTACCGGTCAAGCCCGACAT
GATCGTCTACGTGCGACGGCATGATCCCTCAAACACAGGCGTTGACGCGT
CAAACCCTCCTCAGTGGGGGTTGGTCTCGGGCGAGGGTCCGGAGGGCGTC
ATCGTGGTTGAAGGCTTCGCGTTTGACCGCCAACAAGTGCTGGTGATGGG
TGCCCACCAGTACGCTATCGACATGTTGTCAAAAGCCCGCGATGGCGTAC
CTCGGGCAGGCCGTACACCTGGTACCGGTCAAGCCCGACATGATCGTCTA
CGTGCGACGGCATGATCCCTCAAACACAGGCGTTGACGCGTCAAACCCTC
CTCAGTGGGGGTTGGTCTCGGGCGAGGGTCCGGAGGGCGTCATCGTGGTT
GAAGGCTTCGCGTTTGACCGCCAACAAGTGCTGGTGATGGGTGCCCACCA
GTACGCTATCGACATGTTGTCAAAAGCCCGCGGCAACACCGACATGGCGT
TGAAGATGATGTCGGCGCCAGCGTATCAATTGTCCTTCTTAGAGAGCTTA
CGGGAGGCGTTTTGGACTCCACAACAAATGCAAGAGCTCTGCAACATATC
GTCGCAGCTCCACAAGGAAGGGCGTGTGTCGCCCCTAGGCGATGTGTCGC
CCCTAGGCGATGAGTACGACGATGCTGCCAACTTCGGCGTCGAAGGGAAG
CGCTTCGCCGACGTCGTCGACGCGCTTCATCGCTTCAAACCATCGAGGAG
GCAACACCGACATGGCGTTGAAGATGATGTCGGCGCCAGCGTATCAATTG
TCCTTCTTAGAGAGCTTACGGGAGGCGTTTTGGACTCCACAACAAATGCA
AGAGCTCTGCAACATATCGTCGCAGCTCCACAAGGAAGGGCGTGTGTCGC
CCCTAGGCGATGTGTCGCCCCTAGGCGATGAGTACGACGATGCTGCCAAC
TTCGGCGTCGAAGGGAAGCGCTTCGCCGACGTCGTCGACGCGCTTCATCG
CTTCAAACCATCGAGGAGGTTGGGGGTTGAGACTTCGGGGACGCCGGCAG
GGAGCGGTGGTGCATCTTCGGGCGGGAGCTGAGTTGGGGGTTGAGACTTC
GGGGACGCCGGCAGGGAGCGGTGGTGCATCTTCGGGCGGGAGCTGA
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