mRNA_S-firma_F_contig10618.843.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10618.843.1
Unique NamemRNA_S-firma_F_contig10618.843.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10618.843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10618contigS-firma_F_contig10618:465..3870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1501
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10618.843.1prot_S-firma_F_contig10618.843.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10618 895..3657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.5960639-UTR-S-firma_F_contig10618:464..8941622815600.5960639-UTR-S-firma_F_contig10618:464..894Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10618 465..894 +
1696949445.1788685-UTR-S-firma_F_contig10618:464..8941696949445.1788685-UTR-S-firma_F_contig10618:464..894Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10618 465..894 +
1622815600.6313264-UTR-S-firma_F_contig10618:3657..38701622815600.6313264-UTR-S-firma_F_contig10618:3657..3870Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10618 3658..3870 +
1696949445.2243214-UTR-S-firma_F_contig10618:3657..38701696949445.2243214-UTR-S-firma_F_contig10618:3657..3870Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10618 3658..3870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.608474-CDS-S-firma_F_contig10618:894..16551622815600.608474-CDS-S-firma_F_contig10618:894..1655Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10618 895..1655 +
1696949445.193717-CDS-S-firma_F_contig10618:894..16551696949445.193717-CDS-S-firma_F_contig10618:894..1655Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10618 895..1655 +
1622815600.6211812-CDS-S-firma_F_contig10618:3560..36571622815600.6211812-CDS-S-firma_F_contig10618:3560..3657Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10618 3561..3657 +
1696949445.2121747-CDS-S-firma_F_contig10618:3560..36571696949445.2121747-CDS-S-firma_F_contig10618:3560..3657Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10618 3561..3657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10618.843.1

>prot_S-firma_F_contig10618.843.1 ID=prot_S-firma_F_contig10618.843.1|Name=mRNA_S-firma_F_contig10618.843.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=286bp
MVNVVSKGGAAAAGATSTHLPAYPAPERPNGLCSARARQGDGGCPQEEMQ
PHRVQRGGNLWQPRYAGKAERSTQHAEDGMVDARRKRCGDTGCNKQPSYS
SPGTTKAERGAQHAQDGMADVRSKRRKHRGCNTGPSFGSSGTRKAERCAR
HAEDEMINITIDRRRSAAEKQRGGGPPSIQTENSSGGDESRGGLKRARVI
VDVSLAPSPVAAEVGDGGDGQGAATEMHAWGARWYRGSGAGDDVVQDCDV
RGRRELGAQAGKITSKQCSSSSSSSSIPPALRTGC*
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mRNA from alignment at S-firma_F_contig10618:465..3870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10618.843.1 ID=mRNA_S-firma_F_contig10618.843.1|Name=mRNA_S-firma_F_contig10618.843.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3406bp|location=Sequence derived from alignment at S-firma_F_contig10618:465..3870+ (Sphaerotrichia firma ET2_F female)
CGGCGACGCACCTCGCATCGAGTCGCAAGCCCCACACCAATTCTTGGGTG
GACGTAGTCGAGTGGCATTCTCTCGAGCTGCGGATTAGAAGGGGTCGCCC
ACATCCATCCGAGAGTAGTAGCAAGGGGGAATGGCACACACCGATATCTG
GAGTTCCCCTAGCCTCGTTTGCCCGACGAGAAGAGAGTTAATGATACACA
GGATGCCTGTACCTTGCGACAATGGGATGCGATCCACGAGCGTCGTACGG
CAAGCCCAGCACCAACAAGGCTGAATGTTGTGCTCGACACGCGAGAGCCG
GGATGGTGAATGTCGTCGGCAAGACAAGAGGTGTAACCACCCCGGATGCA
ACAAGTAATACCCATCCTATACGGCAACCCCGACATCCGAAAGGCCGAAC
ACTGCTGTGCTCAACAAAGTGCAAGACGGGATGGTGAACGTCGTCAGCAA
GGGAGGAGCGGCCGCGGCGGGTGCAACAAGCACTCATCTTCCGGCATATC
CGGCACCCGAAAGGCCGAACGGTTTGTGCTCAGCACGCGCAAGGCAGGGT
GATGGTGGATGTCCGCAAGAAGAGATGCAGCCACACCGGGTGCAACGCGG
GGGCAACTTGTGGCAACCCCGGTATGCTGGCAAGGCCGAGCGTTCTACTC
AACACGCGGAAGACGGGATGGTGGATGCCCGTCGCAAGAGATGCGGCGAC
ACCGGGTGCAACAAGCAGCCATCTTACAGCAGCCCCGGCACTACCAAAGC
CGAACGTGGTGCCCAACACGCGCAAGATGGGATGGCGGATGTCCGCAGCA
AGAGGCGCAAACACCGCGGGTGTAACACGGGGCCATCGTTCGGTAGTTCT
GGTACCCGAAAGGCCGAACGTTGTGCTCGACACGCGGAAGACGAGATGAT
TAACATCACCATCGATCGCCGCCGTAGTGCCGCCGAAAAGCAGAGGGGTG
GTGGCCCTCCGTCGATCCAGACAGAGAATTCTTCCGGGGGCGATGAAAGC
AGAGGGGGCCTCAAACGAGCCCGCGTGATTGTCGACGTGTCCTTGGCTCC
ATCTCCGGTAGCAGCAGAGGTGGGTGATGGAGGAGATGGACAAGGCGCGG
CTACGGAAATGCATGCTTGGGGAGCCAGATGGTATCGTGGAAGCGGAGCT
GGTGATGATGTCGTGCAAGACTGCGATGTCCGAGGGCGAAGGTGGGTGGA
GATATGTCTAGAACGCTGGTACGTACCGTTTATGACACAAGGTAACACAC
CTACATAAGAAACCACCCCCCCCACAGGACACGACACCCCGGTGATAGTT
TTGGGCGTTTCTGACAACCCATTGATTTATCATCCGGGCTACATAAGATA
GCACACCCCGGTGACGAATTCTAGCTATACGCCGCATGTCTTCGCGGGGC
CCCTCCTTCTGATCACCGGGGTGGCGGCATCCGCCCCTGGGCATCAAACA
GAATCGACAACTGCTTCCACTGCAGCAGTACAGGCGCCACAGCAGATCAC
CTCCTTCTTTGAACCCGCGCACGCAAGAAGCTCCTGCTACGGCTACTGCT
CCTGCTGCTGTTGATCGAACAACAGCAGCGGCTGACACAGCAATAGAAGC
AGGCGTCAACATGACAGCCTCCACATCGCCTCACCAGCAGCGGTTCCGGG
AGAACACCCCTGGTGTCTCACCGCCCCTCATTAATCACACCCCCAAACAC
ACGCTGTGGGTGGTCGGACTCGCTATCACACACCCTTTATCGCACACCCT
CATTTATCACACACCCCCAGGCAAACCCTGTGAGTGTTTGGACGTGCTAT
ATCACCCCCTGGTTTATCACACCCCCTTAGGGGCCCCTGCGAGCTGCACC
TTATCACCCGGGGACATAAGATACCACACCCCCCACAGGATACCACACCC
GGTGATAATATTTCCAAACACCAAAATGGTTTCACCGGGGTCTGTTGTCT
TGTGTAATGCGGAATTTTTGTCGTTGCTGTTCTTCTTAGCTTGACGAAGG
TTCGACATGCCTTCCATGACTCTTGACGGCCGACACTGTTGTCGATGGTA
GTTTCGATCCAAGAGACAAGTCCGGACAGACCTCAACCTGTTCTACGTGG
CAGTAAACGATGTGGTACGATGTGGCATGCCATTTTCAAAGCGATTATTC
CGGCCGGCCGCGAGTGGCGGCTAGAAACAACGATGTCTTGTGTGTACTTC
ATGCGTTCATCCGCTGCTGAATTTGTTCTTGTCGTTCAAGCAGTATGCAT
ATGTTTGTCTGAGGTTGGTCAGTGGTCGCACGTCACTGGTCTACCGCGAG
GTTTCTATGATCTCCTGACACACCGCTTGCCGTTCGATCTGCTTGGGTGG
GCTGCGTGAAGTGCCCCTCATCCTTGACAAAAACCGGGATAAAAGGCAGC
GGTGGAAGAACTCTCGCATCTTGCTGAGGATTCCAATACGTCGGTGAAAA
CAGACGTGGAAGTGTTATCCTCAACGGAATCGACAACGACTGGTGGGGAG
TTGAACTCGGCACTAACAATCCGCAAACTTCCTGTCGGAGGCATGTTATT
TCGAAGCCCTGCTCGTCTTTGAAGCAGATAGAGTAAGCCGGACCGAATCC
ACGAAATGTATGCTCCGCTGTTTTGTGGTGTTCTCGTTTCTTATCTCTGG
GAATAATCATGCACGGGGAAGCGAGACACGCACCATCCCTGTACGATGAG
CTCAAGTTCATAGAAGTTGCTGCCATCTTTGCATGCCCCCCCGCTGCATC
CCGCCTGATCCGTGCGATAAGATCGATCCCTGGGCCAACTTGGGTAGCGT
GTTTTGATACTTCCCTCAAACTGTTGAAGTTGACTACAAGTAGTTCCCTC
TTCAAACATACAGCGTCGGCATTTTGAATCTATCCGGCTTTATCAAGCTC
CATGTCCAAATTCTGTTAACATGGGCATGACTCACTACGTGCATTACGCA
GCTTGTAGATCAACTGTTGCACGCTTGCACTGCTTCATCCAACATTCCAA
CGCAACTTGTCGCCGTGGCGATAACACTGCTTCCCGCTCACGGTTGCTTC
TTGTGTATCCGTTGGACTTATGCGATGACTCCTCCTATCTCGTCAGGGAA
CTCGGTGCACAAGCGGGGAAAATCACGAGCAAGCAGTGCAGCAGCAGCAG
CAGCAGCAGCAGCATCCCACCGGCACTGAGAACGGGATGCTGACCAACAG
TTGAGGTGGTACGGTAACCAGCCTACTCGCCGCCCGTGATACTGTACCGA
CGTTGAGTGCCGTTGTGAGTTCCATGGAAAGTGGTTGTCGTACAGAGGAT
AGGGCATCCGTGTGCGCGGATGGGGTATTTCGAAGATGTGGGGTTGGCGT
TGGTGTGTCTCTAAGGATCTGGTTTGGCTCATGGTTGTCCATTGATTGGA
TGTTTC
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Coding sequence (CDS) from alignment at S-firma_F_contig10618:465..3870+

>mRNA_S-firma_F_contig10618.843.1 ID=mRNA_S-firma_F_contig10618.843.1|Name=mRNA_S-firma_F_contig10618.843.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1716bp|location=Sequence derived from alignment at S-firma_F_contig10618:465..3870+ (Sphaerotrichia firma ET2_F female)
ATGGTGAACGTCGTCAGCAAGGGAGGAGCGGCCGCGGCGGGTGCAACAAG
CACTCATCTTCCGGCATATCCGGCACCCGAAAGGCCGAACGGTTTGTGCT
CAGCACGCGCAAGGCAGGGTGATGGTGGATGTCCGCAAGAAGAGATGCAG
CCACACCGGGTGCAACGCGGGGGCAACTTGTGGCAACCCCGGTATGCTGG
CAAGGCCGAGCGTTCTACTCAACACGCGGAAGACGGGATGGTGGATGCCC
GTCGCAAGAGATGCGGCGACACCGGGTGCAACAAGCAGCCATCTTACAGC
AGCCCCGGCACTACCAAAGCCGAACGTGGTGCCCAACACGCGCAAGATGG
GATGGCGGATGTCCGCAGCAAGAGGCGCAAACACCGCGGGTGTAACACGG
GGCCATCGTTCGGTAGTTCTGGTACCCGAAAGGCCGAACGTTGTGCTCGA
CACGCGGAAGACGAGATGATTAACATCACCATCGATCGCCGCCGTAGTGC
CGCCGAAAAGCAGAGGGGTGGTGGCCCTCCGTCGATCCAGACAGAGAATT
CTTCCGGGGGCGATGAAAGCAGAGGGGGCCTCAAACGAGCCCGCGTGATT
GTCGACGTGTCCTTGGCTCCATCTCCGGTAGCAGCAGAGGTGGGTGATGG
AGGAGATGGACAAGGCGCGGCTACGGAAATGCATGCTTGGGGAGCCAGAT
GGTATCGTGGAAGCGGAGCTGGTGATGATGTCGTGCAAGACTGCGATGTC
CGAGGGCGAAGATGGTGAACGTCGTCAGCAAGGGAGGAGCGGCCGCGGCG
GGTGCAACAAGCACTCATCTTCCGGCATATCCGGCACCCGAAAGGCCGAA
CGGTTTGTGCTCAGCACGCGCAAGGCAGGGTGATGGTGGATGTCCGCAAG
AAGAGATGCAGCCACACCGGGTGCAACGCGGGGGCAACTTGTGGCAACCC
CGGTATGCTGGCAAGGCCGAGCGTTCTACTCAACACGCGGAAGACGGGAT
GGTGGATGCCCGTCGCAAGAGATGCGGCGACACCGGGTGCAACAAGCAGC
CATCTTACAGCAGCCCCGGCACTACCAAAGCCGAACGTGGTGCCCAACAC
GCGCAAGATGGGATGGCGGATGTCCGCAGCAAGAGGCGCAAACACCGCGG
GTGTAACACGGGGCCATCGTTCGGTAGTTCTGGTACCCGAAAGGCCGAAC
GTTGTGCTCGACACGCGGAAGACGAGATGATTAACATCACCATCGATCGC
CGCCGTAGTGCCGCCGAAAAGCAGAGGGGTGGTGGCCCTCCGTCGATCCA
GACAGAGAATTCTTCCGGGGGCGATGAAAGCAGAGGGGGCCTCAAACGAG
CCCGCGTGATTGTCGACGTGTCCTTGGCTCCATCTCCGGTAGCAGCAGAG
GTGGGTGATGGAGGAGATGGACAAGGCGCGGCTACGGAAATGCATGCTTG
GGGAGCCAGATGGTATCGTGGAAGCGGAGCTGGTGATGATGTCGTGCAAG
ACTGCGATGTCCGAGGGCGAAGGGAACTCGGTGCACAAGCGGGGAAAATC
ACGAGCAAGCAGTGCAGCAGCAGCAGCAGCAGCAGCAGCATCCCACCGGC
ACTGAGAACGGGATGCTGAGGAACTCGGTGCACAAGCGGGGAAAATCACG
AGCAAGCAGTGCAGCAGCAGCAGCAGCAGCAGCAGCATCCCACCGGCACT
GAGAACGGGATGCTGA
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