mRNA_S-firma_F_contig10617.842.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_F_contig10617.842.1
Unique Name	mRNA_S-firma_F_contig10617.842.1
Type	mRNA
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)

Homology

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BLAST of mRNA_S-firma_F_contig10617.842.1 vs. uniprot
Match: A0A6H5L2B6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2B6_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 8.690e-45
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 3

Query:    3 GAGMIYWGQEAYKNLDALHGEMQNPDTVARIFHKFDHNQDGTLNVTEMGNLLESLGAMMRPTEVEAAIIIMDANNDGKVTLPEFQAWWAKAPAPDIV 293
            GAGMIYWGQEAYKNLDALHGEM+NP  V  +F KFDHN DG L+VTEMGNLLESLGAMMRPTEVEAA IIMD +NDGK++L EFQ WWA +P+P++V
Sbjct:  165 GAGMIYWGQEAYKNLDALHGEMKNPAVVEGMFRKFDHNNDGVLDVTEMGNLLESLGAMMRPTEVEAACIIMDTDNDGKISLAEFQGWWANSPSPEVV 261

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BLAST of mRNA_S-firma_F_contig10617.842.1 vs. uniprot
Match: A0A485KKQ8_9STRA (Aste57867_8561 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKQ8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-6
Identity = 24/81 (29.63%), Postives = 47/81 (58.02%), Query Frame = 3

Query:   24 GQEAYKNLDALHGEMQNPDTVARIFHKFDHNQDGTLNVTEMGNLLESLGAMMRPTEVEAAIIIMDANNDGKVTLPEFQAWW 266
            G +  + L     E    +T+   F  FD +  G ++ +E+ +L+ +LG ++ P E++AA+ ++D + +G V+L EF+ WW
Sbjct:    5 GDDDARELPPADDEASQKETIRAAFQNFDADGSGCIDASELADLVSTLGGILSPDELKAALAVLDTDGNGFVSLDEFERWW 85

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BLAST of mRNA_S-firma_F_contig10617.842.1 vs. uniprot
Match: A0A250WTR1_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WTR1_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 1.550e-6
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 3

Query:   84 VARIFHKFDHNQDGTLNVTEMGNLLESLGAMMRPTEVEAAIIIMDANNDGKVTLPEFQAWW 266
            VA  F +FD N +G+L+++E+GNL  SLG  +   E++ A + +DA+ DGKV   EF  WW
Sbjct:  267 VALAFSEFDLNDNGSLDISEIGNLCSSLGWRLEEAELKEAYMTLDADKDGKVDFKEFVDWW 327

[Close]

BLAST of mRNA_S-firma_F_contig10617.842.1 vs. uniprot
Match: A0A067CAY5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CAY5_SAPPC)

HSP 1 Score: 58.2 bits (139), Expect = 5.660e-6
Identity = 24/69 (34.78%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   69 QNPDTVARIFHKFDHNQDGTLNVTEMGNLLESLGAMMRPTEVEAAIIIMDANNDGKVTLPEFQAWWAKA 275
            ++ +T+   F  FD +  G+++ TE+  L+ESLG ++ P E +AA+ ++D + +G ++  EF AWW  A
Sbjct:    9 KDDETIRAAFAAFDTDGSGSIDTTELVELVESLGGILSPDEFQAALKLLDKDGNGVISYNEFAAWWRHA 77

[Close]

BLAST of mRNA_S-firma_F_contig10617.842.1 vs. uniprot
Match: T0QFL9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QFL9_SAPDV)

HSP 1 Score: 57.0 bits (136), Expect = 3.310e-5
Identity = 23/66 (34.85%), Postives = 43/66 (65.15%), Query Frame = 3

Query:   78 DTVARIFHKFDHNQDGTLNVTEMGNLLESLGAMMRPTEVEAAIIIMDANNDGKVTLPEFQAWWAKA 275
            +T+   F  FD +  G+++ +E+  L+ESLG ++ P E +AA+ ++D + +G ++  EF AWW +A
Sbjct:   13 ETIRAAFAAFDADGSGSIDASELLELVESLGGILSPDEFQAALKLLDKDGNGVISYDEFAAWWQQA 78

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig10617.842.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig10617.842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A6H5L2B6_9PHAE	8.690e-45	77.32	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A485KKQ8_9STRA	1.280e-6	29.63	Aste57867_8561 protein n=1 Tax=Aphanomyces stellat...	[more]
A0A250WTR1_9CHLO	1.550e-6	44.26	Uncharacterized protein n=1 Tax=Chlamydomonas eust...	[more]
A0A067CAY5_SAPPC	5.660e-6	34.78	Uncharacterized protein n=1 Tax=Saprolegnia parasi...	[more]
T0QFL9_SAPDV	3.310e-5	34.85	Uncharacterized protein n=1 Tax=Saprolegnia diclin...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig10617	contig	S-firma_F_contig10617:990..4679 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Properties


Property Name	Value
Seed ortholog	2880.D7FNB9
PFAMs	COPI_assoc,EF-hand_7
Max annot lvl	2759\|Eukaryota
Evalue	1.01e-48
EggNOG OGs	2CH3Q@1\|root,2SA8G@2759\|Eukaryota
Description	COPI associated protein
COG category	S
Hectar predicted targeting category	other localisation
Ec32 ortholog description	EF-hand domain pair
Ec32 ortholog	Ec-24_000200.1
Exons	3
Model size	1299
Cds size	285
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig10617.842.1	prot_S-firma_F_contig10617.842.1	Sphaerotrichia firma ET2_F female	polypeptide	S-firma_F_contig10617 1001..3676 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815600.5032654-UTR-S-firma_F_contig10617:989..1000	1622815600.5032654-UTR-S-firma_F_contig10617:989..1000	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig10617 990..1000 +
1696949445.1068377-UTR-S-firma_F_contig10617:989..1000	1696949445.1068377-UTR-S-firma_F_contig10617:989..1000	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig10617 990..1000 +
1622815600.5556993-UTR-S-firma_F_contig10617:3676..4679	1622815600.5556993-UTR-S-firma_F_contig10617:3676..4679	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig10617 3677..4679 +
1696949445.1630244-UTR-S-firma_F_contig10617:3676..4679	1696949445.1630244-UTR-S-firma_F_contig10617:3676..4679	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig10617 3677..4679 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815600.5133786-CDS-S-firma_F_contig10617:1000..1115	1622815600.5133786-CDS-S-firma_F_contig10617:1000..1115	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10617 1001..1115 +
1696949445.1245368-CDS-S-firma_F_contig10617:1000..1115	1696949445.1245368-CDS-S-firma_F_contig10617:1000..1115	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10617 1001..1115 +
1622815600.5234163-CDS-S-firma_F_contig10617:2460..2495	1622815600.5234163-CDS-S-firma_F_contig10617:2460..2495	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10617 2461..2495 +
1696949445.1402802-CDS-S-firma_F_contig10617:2460..2495	1696949445.1402802-CDS-S-firma_F_contig10617:2460..2495	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10617 2461..2495 +
1622815600.5369549-CDS-S-firma_F_contig10617:3541..3676	1622815600.5369549-CDS-S-firma_F_contig10617:3541..3676	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10617 3542..3676 +
1696949445.1520026-CDS-S-firma_F_contig10617:3541..3676	1696949445.1520026-CDS-S-firma_F_contig10617:3541..3676	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10617 3542..3676 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_F_contig10617:990..4679+
coding sequence from alignment at S-firma_F_contig10617:990..4679+

protein sequence of mRNA_S-firma_F_contig10617.842.1

>prot_S-firma_F_contig10617.842.1 ID=prot_S-firma_F_contig10617.842.1|Name=mRNA_S-firma_F_contig10617.842.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=95bp
MIYWGQEAYKNLDALHGEMQNPDTVARIFHKFDHNQDGTLNVTEMGNLLE
SLGAMMRPTEVEAAIIIMDANNDGKVTLPEFQAWWAKAPAPDIV*

mRNA from alignment at S-firma_F_contig10617:990..4679+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_F_contig10617.842.1 ID=mRNA_S-firma_F_contig10617.842.1|Name=mRNA_S-firma_F_contig10617.842.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3690bp|location=Sequence derived from alignment at S-firma_F_contig10617:990..4679+ (Sphaerotrichia firma ET2_F female)
TCGGCGCAGGCATGATCTACTGGGGCCAGGAGGCTTACAAGAACTTGGAC
GCGCTGCACGGGGAGATGCAGAACCCCGACACCGTGGCCCGCATCTTCCA
CAAGTTCGACCACAACCAGGACGGGAGTGAGTTGGTGTTCTGGTGTGTGT
TTGTGTGTTTTTGTGGTTTTTGTGTCTTTGATAAATTTTCTACACACGTG
AAGCCCACAAGTTCAACCACAACCAGGACGGGAGTGAGTTGGTGTTCTTG
TGTGTGTGTTTTTGCCTTCCACAGTTCCACCACAACCAGGACGGGAGTGA
GTTGGTGTTCTTGTGTGTGTTTGTGTGTTTTTGTGGTTTTTGTGTCTTTG
ATAAATTTTCTACACACGTGAAGCCCACAAGTTCAACCACAACCAGGACG
GGAGTGAGTTGGTGTTCTTGTGTGTGTTTGTGTGTTTTTGCCTTCCACAG
TTCCACCACAACCAGGACGGGAGTGAGTTGGTGTTCTTGTGTGTGTTTTT
GCGGCTTTTTGTGTCTTTTATAAATTTTCTACGCACAAGTTCGACCACAA
CCAGGACGGGAGTGAGTTGGTGTACTTGTGTGTGTGTTTTTGCCTTCCAC
AGTTCCATCACAACCAGGACGGGAGTGAGTTAGTGTTCTTGTGTGTGTGT
GTGTTTTGCGGTTTTTGTGTCTTTAATAAACTTTCTACACACGTGAGACG
AGAGGAATGAATCCTCGGCAAGATGGGTCTGGCTGACTGGCTGAAGGCAC
GCATGCACGCGACTGGCTGATCGATTGACTGTTGTTAATAAATTTTCTAC
ATTCGTCAGCCGAATACGTCTGTCCTGTGAATAAGTCGTTCCAGGGGGAC
TGTTGTGACACACNNNNNNNNNNCTAACCCTCCCCGTCCCAGCCAACAGC
ACAGAATCCGCAATCCGTTAGGTTTGTTGGTTGTTTGGTTTCGTAGTTTG
TAAGTCGGTTTGTTATTCAGCGTATGTGTGTTATCTTCCGTCGGTCATCG
AAAGTTCGTGTAGACTATGCCGTCGTAGCGTTGTCATGTGTAGAACTATG
CCGTCGTTGCTTTTGTCACGTGTGGACTCTATGCCGTCGTTGTTGTGGCC
TCCGTGCTCCATGGCGGTGTTGCCGACGGCCGTGAAAATAACGTGGAGCC
ACCTCTAGCGTCGTGCAAAGCGTCTCGCTTGAGGCTTACCGCTGCGGTGA
TTCTGTGCCGTGGCTTGGCTTTTCTTCTCTACGAGCCACCTCCAGCGTCG
TGCAAAGCGTCTCGCTTGAGGCTAAATTAGCGGCTGCCGTGGTTCTGTGC
CGTTGCTTGGCTTTTCTTCTCTACATGTACCCCGCTTATCTCGCGCCCCC
GCTTTTTCCGCGTGTTGTGTGTGTGTCGTTTCGTGTCTGACCGTTCGGTG
GACGTGGATTAATCCACGCCTTTCTTCCCCCCCTCCCTCCTTCCTTTCTT
CCCTCCTTCCTAATTCTGCAGCGCTGAACGTCACCGAGATGGGCAACCTG
TTGGAGGTAAGCTAGGCTTCTAGTCGTCTGTTATTTCTCACAGTGACTCT
ACTCTACACTAAAATTCAGCGCTGGAGGTAAGGTAGGCTTCTATAATAGT
CGCTGTTGTTTCTAATGGTGACTACACTAAAATACAACGCTGGAGGTAAG
CTAGGCTTCTAAATAGTCGCTGTGTTTCTCACAGTGACTCTACACTAGAA
TTCAACGCTCGAGGTAGGTAGGCTTCTAGATAGTCGCTGTTGTTTCTCAC
GGTGACTCTACACTGTCGAAGTCCAGACCGCGGTGTTGTTCTTTCTCCCC
CAACACCGAAAGGAAGAAAGAAACGCTGTCGTTCTCTCCATCGCCTCCGC
TCTTGGGGTATATTTCTGGCTGCGGGTTTTTGGGCTCCGTGGTCGTGTTT
TTCTACGGGTACATTGTTGTTCAATTATTGTTGTTTCGTTTGCCATCCGA
CAATCGCACATCAATCCAACCAAACCTTTACTCGGCATGTCTTACTCCAT
AGTGCTATTGATGCGTAGAAAAAGAAATTGTTTTATGACACCAAACCAAG
CTCGTGCCTTGTCTAGACCACCGTGTCCAATGATGACCAAGCAGGATATA
TATATATATTTTTTTAATCTGTTTTGTCTCTTGTCTCGCCTACTTTCCCT
CTTGAACCTGCGCTATCACGCTATCACTACTGCATCGTGGTGCCGTCACT
AGTGATGCTCTCATTCTCATGTTTTAAGTACGTTTTGCCCATTTAATTTA
ACGAGTATTATTACTATTTTGTTTCCGTCCAAAGTTTTCTTGGAGCAAGT
AACACGGTCAAAGCGATGCTTTGCGGTCGCTGCCTACCCTTGGTTCTGAC
TGCCATGGATTGCCCTTCTATAATGTAGCAGCCTTTTCCCCGAGAGCAAG
GGTAGTAAAATCACCAAAATCACTCCCAAGACGCCTAAGCTTATGCCGCT
GAGCTACCCCCCTCTCATCGTTGCCTTTCTCCCTCGGTTCCTTCCTCGCC
TGCTTCCTCTGAACAAAAACAAATGGAAAAAAAATGGAAAAATCGGCCAC
AGTCCCTTGGAGCCATGATGAGGCCCACGGAGGTTGAGGCGGCCATCATC
ATCATGGACGCAAATAACGACGGCAAGGTCACCCTGCCCGAGTTCCAGGC
TTGGTGGGCTAAGGCCCCCGCACCTGACATCGTTTAAATCCAGCGTGCCC
CCTTTGGCTGCTCTACGGTACAAACCGAACTTGCTTTCTCTGCTTCTCCC
GCCTTGGTTTGGTTCGGTTTGGTAGGTATACCGCTGTATTCCTGCCGTTT
TGATTCAGTACCGAGTGATCATGGATCATGGCATCAGCGTTGTTGTTGTT
GGTCTTGTTCGGTTGGGTTTTCTTGATCGACTTTGGTCGGTGCTAATTAA
AACCGATCACGCTGTCCGTGGCCGGGTGGTGGTGGCAAAAGCGTGTACGT
GAAGAAGAGCAGGGGCTTAGCGTGCTCAACGTGGTGAGACGCAGCGGAGT
GAATTGATTTTGCCGCCATCCGTCGCAGGCGACTGACGGACATGCCCTGT
CTCGCCTTGGCTTGGCACCTTCTTTCCTAGGCTAGGCAATCGAGGCGATG
AGAAACGACGCTGTTTCAAGTTGGAGTACAAATCGCTCCGATGTATCTCG
TAGGGCGAACCCGGATGGTATACTTATTTTAGTTGTTTGTCAGCGGCCGT
TACTCCTACAGTAATGCCCTCGTCTTTTTTTCCTCTCGGCCTATTGGCCG
TGTGAATCTTTTCTAGGTGACACTCTTGATTTCCTCGTTATCGAACAGCG
GTCAGGCAGTACATGCCCACGGCGTTTTTGGCAAGTCGTAGTCGTTGTTG
TTGTGGTTGTCGTGGTCGGGGGTCAATCTTCCGCGTAATTTAGCGACGTC
TACGGAGGTGGTGCTGGTTTGCCTCTGCGGCCTATCTCGTTGGTGAGCAT
TTTTCCCGCGCTCGCTGTGTCTTGATTTGGTCTCTTTTGCTGTATTTTTT
TTTTCGCTTTTTTCCCTTGGACGTTTGCATATCATAAATTATTTACGTAC
GCCGTTCGATATGGTATTTTGGTTCCATCAAAGCGCTAGACCCGTTTATC
ATTTTTTCGTTTGCCATCCGACGATTGCAGATGTACCCAACAACGCGCTA
GACCCGCTGCCAATTTGTTCCTTGTTCTTCGAGCCTCCGG

Coding sequence (CDS) from alignment at S-firma_F_contig10617:990..4679+

>mRNA_S-firma_F_contig10617.842.1 ID=mRNA_S-firma_F_contig10617.842.1|Name=mRNA_S-firma_F_contig10617.842.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=570bp|location=Sequence derived from alignment at S-firma_F_contig10617:990..4679+ (Sphaerotrichia firma ET2_F female)
ATGATCTACTGGGGCCAGGAGGCTTACAAGAACTTGGACGCGCTGCACGG
GGAGATGCAGAACCCCGACACCGTGGCCCGCATCTTCCACAAGTTCGACC
ACAACCAGGACGGGAATGATCTACTGGGGCCAGGAGGCTTACAAGAACTT
GGACGCGCTGCACGGGGAGATGCAGAACCCCGACACCGTGGCCCGCATCT
TCCACAAGTTCGACCACAACCAGGACGGGACGCTGAACGTCACCGAGATG
GGCAACCTGTTGGAGCGCTGAACGTCACCGAGATGGGCAACCTGTTGGAG
TCCCTTGGAGCCATGATGAGGCCCACGGAGGTTGAGGCGGCCATCATCAT
CATGGACGCAAATAACGACGGCAAGGTCACCCTGCCCGAGTTCCAGGCTT
GGTGGGCTAAGGCCCCCGCACCTGACATCGTTTAATCCCTTGGAGCCATG
ATGAGGCCCACGGAGGTTGAGGCGGCCATCATCATCATGGACGCAAATAA
CGACGGCAAGGTCACCCTGCCCGAGTTCCAGGCTTGGTGGGCTAAGGCCC
CCGCACCTGACATCGTTTAA