mRNA_S-firma_F_contig1061.835.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1061.835.1
Unique NamemRNA_S-firma_F_contig1061.835.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 2.390e-139
Identity = 240/356 (67.42%), Postives = 268/356 (75.28%), Query Frame = 1 
Query:    1 AVAVVVVMALRTAAAAIKRRSPRLSAEVNRSLSLHNGGSGAFTAAPGGTPRTSLSKGGRHALVVKTRGRSSAPSSPSLAAATSPAGRRDFGTDTPATKRPRRVSKPKGVVAAGVKKNACSSLGRTREERKRGEGFDVVIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAA--------KTQTKKSKSSKPKPFILVDGNFTPAGL--AEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSFLKKMEASGGKLSENK 1038
            A A VV MA++T   A  RRSPRL+AEV R     +G SGAF A P   PR  L    R A+    R +SS+P    LAA     G    G D    +R RRVSKPKGV A+ V+K   S+LGRTRE RK  EGFD VIG+DEAGRGPFAGPVVAAAC IPPD++I GIQDSKK+ QHSDRE L+KELTE+PGVIWATSEVGS RIDEINILEATKEAMTNC LEVCSK+         KT  KK+ S K KPF+LVDGNFTP GL  A+V+++ V+GGDGLEYCIAAASIIAKVTRDRLMIEFGERWPV+GFERHKGYGT AH DAIREHGMVEIHRRSFLK ME+SGGKL+E K
Sbjct:    9 ATAAVVAMAIQTRTTAA-RRSPRLAAEVRR----RHGSSGAFNAGPC-PPREPLGVSNRRAIATSARSKSSSP----LAA-----GAESSGADVRPKRRIRRVSKPKGVTAS-VQKKTKSTLGRTRENRKLAEGFDAVIGLDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFKELTETPGVIWATSEVGSSRIDEINILEATKEAMTNCVLEVCSKSVEPSANKGMKTNWKKNASDK-KPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSFLKNMESSGGKLAEYK 347
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BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: D8RCY3_SELML (Ribonuclease (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RCY3_SELML)

HSP 1 Score: 198 bits (504), Expect = 5.440e-57
Identity = 104/194 (53.61%), Postives = 132/194 (68.04%), Query Frame = 1 
Query:  412 VIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKPFILVDGNFTPAGLAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSF 993
            VIGVDEAGRGP AGPVVAAAC IP D+DI GI DSKK+     RE LY ++T +PGV ++   V + RIDEINIL+AT EAM  C  E+                  P+IL+DGN  P GL+   ++ V+ GD   + IAAASI+AKVTRDRLM ++ +RWP+YGF+ HKGYGT +H+ A+ +HG  +IHRRSF
Sbjct:    3 VIGVDEAGRGPLAGPVVAAACIIPEDVDIQGIDDSKKLTAEK-REQLYSQITSTPGVRFSICVVDAPRIDEINILQATMEAMETCVEELTGNGRDHP----------PYILIDGNRIPGGLSGKHARSVVKGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIHRRSF 185
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BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: A0A225WDA0_9STRA (Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDA0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 9.940e-57
Identity = 121/245 (49.39%), Postives = 154/245 (62.86%), Query Frame = 1 
Query:  283 PATKRPRRVSKPKGVVAAGVKKNACSSLGRTREERKRGEGFDVVIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKPFILVDGNFTPAGLAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSF--LKKMEA 1011
            P   R  R SKPK   A   +K + S+L R  E R   +G+  VIGVDEAGRGP AGPVVAAAC +P D+ I G+ DSKK+++   RE L++ LT  P + +A     ++RIDEINIL+A+ E+MT    EV  K  + +T          F+LVDGN  P  L E+ ++ V+ GD   Y IAAASIIAKVTRDRLM E+ E++P YG  +HKGY TRAH  AI +HG  EIHR +F  LK  EA
Sbjct:   37 PVPSRAPRASKPK-KTAKKDEKQSISTLSRVFETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REELFELLTNHPKITYAVHVNSAQRIDEINILQASLESMTKSVNEVAEKLQQDKT----------FVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRAHVAAIAKHGPCEIHRMTFAPLKPKEA 268
[Close]
BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: G4Z1P2_PHYSP (Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1P2_PHYSP)

HSP 1 Score: 197 bits (501), Expect = 9.740e-56
Identity = 115/231 (49.78%), Postives = 148/231 (64.07%), Query Frame = 1 
Query:  352 ACSSLGRTREERKRGEGFDVVIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKPFILVDGNFTPAGLAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSF--LKKMEASGGKLSENK 1038
            + S+L RT E R + +G+  VIGVDEAGRGP AGPVVAAAC +P D+ I G+ DSKK+++   REAL++ LT  P + +A     ++RIDEINIL+A+ E+MT  A EV  +  +T          K F+LVDGN  P  L E+ ++ V+ GD   Y IAAASIIAKVTRDRLM E+ E++P YG  +HKGY TR H  AI +HG   IHR +F  LK  EA   K    K
Sbjct:   32 STSTLARTFETRYQAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMTKSANEVAERLQQTD---------KTFVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEQYPQYGLAKHKGYPTRDHVAAIAKHGPCAIHRMTFAPLKPKEAPKPKAKGKK 251
[Close]
BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: W2QYI7_PHYPN (Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepID=W2QYI7_PHYPN)

HSP 1 Score: 192 bits (489), Expect = 1.230e-53
Identity = 114/229 (49.78%), Postives = 142/229 (62.01%), Query Frame = 1 
Query:  358 SSLGRTREERKRGEGFDVVIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKPFILVDGNFTPAGLAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSF--LKKMEASGGKLSENK 1038
            S+L R  E R   +G+  VIGVDEAGRGP  GPVVAAAC +P D+ I G+ DSKK+ +   REAL++ LT  P + +A     ++RIDEINIL+A+ E+MT    EV  +            K K F+LVDGN  P  L E+ ++ VI GD   Y IAAASIIAKVTRDRLM E+ E++P YG  +HKGY TR H  AI +HG  EIHR +F  LK  EA   K    K
Sbjct:   61 STLSRIFETRYEAKGYTTVIGVDEAGRGPLVGPVVAAACHVPLDVTIPGVDDSKKILEPQ-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLESMTKSVNEVAERL---------QQKDKTFVLVDGNKLPPTL-ELPAEAVIKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRGHVAAIAKHGPCEIHRMTFAPLKPKEAPKPKAKGKK 278
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BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: A0A2K1L292_PHYPA (Ribonuclease n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L292_PHYPA)

HSP 1 Score: 193 bits (491), Expect = 3.050e-53
Identity = 101/198 (51.01%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:  400 GFDVVIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKPFILVDGNFTPAGLAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSF 993
            GF  V GVDEAGRGP AGPVVAAAC IP    I G+ DSKK+ + + RE LY ++  +PGV +A   V + +IDEINIL+AT  AM+ C  ++         +K +  +   +IL+DGN  P  L++ ++Q+VI GD   + IAAASI+AKVTRDR+M+++  RWPVYGF+ HKGYGT AH  A+  HG  +IHRRSF
Sbjct:  140 GFRNVAGVDEAGRGPLAGPVVAAACIIPASATIPGVDDSKKLTE-AQREELYAQIVATPGVAYAIHVVDAAKIDEINILQATLLAMSTCVKKL---------RKERGGEAPDYILIDGNRIPDELSKEEAQFVIKGDAECHVIAAASILAKVTRDRMMVDYDRRWPVYGFKAHKGYGTAAHIGALLNHGPCDIHRRSF 327
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BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: A0A1Y1I4C1_KLENI (Ribonuclease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I4C1_KLENI)

HSP 1 Score: 188 bits (478), Expect = 2.160e-52
Identity = 107/208 (51.44%), Postives = 131/208 (62.98%), Query Frame = 1 
Query:  370 RTREERKRGEGFDVVIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKPFILVDGNFTPAGLAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSF 993
            R  E  +   GF  V GVDEAGRGP AGPVVAAAC +PP+ +I G+ DSKKV++ ++R+ LY  +T +PGV +A S V    ID+INILEA   AM N    V +                 F LVDGN  P  LA   S+ ++GGD L   IAAASIIAKVTRDRLM EF E+WP YGF+ HKGYGT AH + ++  G V IHRR+F
Sbjct:   42 RDAEALQWAAGFKRVAGVDEAGRGPLAGPVVAAACILPPNFEIPGVDDSKKVSE-ANRDRLYDIITNAPGVEFAVSVVDVETIDQINILEAAMLAMANAVKLVRA----------------DFALVDGNRIPKQLAASVSKAIVGGDALSTSIAAASIIAKVTRDRLMCEFHEQWPEYGFKAHKGYGTAAHMEVLKRLGPVVIHRRTF 232
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BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: A0A0P1ACX4_PLAHL (Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACX4_PLAHL)

HSP 1 Score: 187 bits (476), Expect = 5.860e-52
Identity = 114/248 (45.97%), Postives = 154/248 (62.10%), Query Frame = 1 
Query:  295 RPRRVSKPKGVVAAGVKKNACS--SLGRTREERKRGEGFDVVIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKPFILVDGNFTPAGLAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSF--LKKMEASGGKL 1026
            R RR+ KPK  +   + K A    +L R  E R + +G+  VIGVDEAGRGP AGPVVAAAC +P D+ I G+ DSKK+ Q   REAL++ LT  P + +A     ++RIDEINIL+A+ EAMT    +V  +  +         K   F+LVDGN  P  L ++ ++ V+ GD   + IAAASIIAKVTRDR+M  + +++P YG  +HKGY TRAH  AI +HG  +IHR +F  LK  + S  K+
Sbjct:   32 RDRRIPKPKKAL---IDKLAVPPRTLSRQFETRYKAKGYSTVIGVDEAGRGPLAGPVVAAACHVPLDVVIEGVDDSKKILQER-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLEAMTKAVNDVTKRLLQ---------KDNIFVLVDGNKLPPTL-DLPAEAVVKGDSKVFSIAAASIIAKVTRDRIMRNYDDQYPQYGLAQHKGYPTRAHVAAIAKHGPCKIHRMTFAPLKPKDMSKSKI 265
[Close]
BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: H3G7Z9_PHYRM (Ribonuclease n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7Z9_PHYRM)

HSP 1 Score: 184 bits (467), Expect = 1.620e-51
Identity = 103/205 (50.24%), Postives = 132/205 (64.39%), Query Frame = 1 
Query:  379 EERKRGEGFDVVIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKPFILVDGNFTPAGLAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSF 993
            E R   +G+  VIGVDEAGRGP AGPVVAAAC +P D+ + G+ DSKK+ +   REAL++ LT  P + +A     ++RIDEINIL+A+ E+M     EV  +            K K F+LVDGN  P  L E+ ++ V+ GD   Y IAAASIIAKVTRDRLM ++ E++P YG  +HKGY TRAH  AI EHG   IHR +F
Sbjct:    2 EARCEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTLDGVDDSKKILEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMAYSVNEVAERL---------QQKDKTFVLVDGNKLPPML-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMRQYDEQYPQYGLAQHKGYPTRAHVAAIAEHGACAIHRMTF 195
[Close]
BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Match: A0A2R6XCN5_MARPO (Ribonuclease n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XCN5_MARPO)

HSP 1 Score: 186 bits (473), Expect = 5.950e-51
Identity = 104/199 (52.26%), Postives = 138/199 (69.35%), Query Frame = 1 
Query:  400 GFDVVIGVDEAGRGPFAGPVVAAACFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKP-FILVDGNFTPAGLAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHKGYGTRAHSDAIREHGMVEIHRRSF 993
            GF  V GVDEAGRGP AGPVVAAAC IP  ++I GI DSKK+ + + RE LY+++T +PG+ +A   V +  IDE+NIL+AT +AM+ C ++V S A++          P+P FILVDGN  P G  E +S+ V+ GD +   IAAASI+AKVTRDRLM+ + + WP YGF+ HKGYGT  H  A+ ++G  +IHRRSF
Sbjct:  110 GFQHVAGVDEAGRGPLAGPVVAAACIIPSSVNIEGIDDSKKLTE-AKREELYEKITSTPGISYAIHVVDAAIIDEVNILQATMQAMSAC-VQVLSCASQEN--------PRPDFILVDGNRLPDGFPE-NSRSVVKGDAVCQVIAAASILAKVTRDRLMLSYDKTWPNYGFKAHKGYGTATHMAALLKYGPCDIHRRSF 297
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1061.835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJW9_9PHAE2.390e-13967.42Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D8RCY3_SELML5.440e-5753.61Ribonuclease (Fragment) n=5 Tax=Selaginella moelle... [more]
A0A225WDA0_9STRA9.940e-5749.39Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=... [more]
G4Z1P2_PHYSP9.740e-5649.78Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID... [more]
W2QYI7_PHYPN1.230e-5349.78Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepI... [more]
A0A2K1L292_PHYPA3.050e-5351.01Ribonuclease n=1 Tax=Physcomitrium patens TaxID=32... [more]
A0A1Y1I4C1_KLENI2.160e-5251.44Ribonuclease n=1 Tax=Klebsormidium nitens TaxID=10... [more]
A0A0P1ACX4_PLAHL5.860e-5245.97Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=47... [more]
H3G7Z9_PHYRM1.620e-5150.24Ribonuclease n=1 Tax=Phytophthora ramorum TaxID=16... [more]
A0A2R6XCN5_MARPO5.950e-5152.26Ribonuclease n=2 Tax=Marchantia polymorpha TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1061contigS-firma_F_contig1061:1149..5538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FM98
PFAMsRNase_HII
Max annot lvl2759|Eukaryota
KEGG koko:K03470,ko:K10743
KEGG Pathwayko03030,map03030
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
Evalue1.05e-143
EggNOG OGsCOG0164@1|root,KOG2299@2759|Eukaryota
EC3.1.26.4
DescriptionRNA-DNA hybrid ribonuclease activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibonuclease HII/HIII
Ec32 orthologEc-17_003740.1
Exons7
Model size1667
Cds size1023
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.7961817-UTR-S-firma_F_contig1061:1148..11691622815599.7961817-UTR-S-firma_F_contig1061:1148..1169Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1061 1149..1169 +
1696949444.5787172-UTR-S-firma_F_contig1061:1148..11691696949444.5787172-UTR-S-firma_F_contig1061:1148..1169Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1061 1149..1169 +
1622815599.895181-UTR-S-firma_F_contig1061:4915..55381622815599.895181-UTR-S-firma_F_contig1061:4915..5538Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1061 4916..5538 +
1696949444.6895986-UTR-S-firma_F_contig1061:4915..55381696949444.6895986-UTR-S-firma_F_contig1061:4915..5538Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1061 4916..5538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.8109396-CDS-S-firma_F_contig1061:1169..12831622815599.8109396-CDS-S-firma_F_contig1061:1169..1283Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 1170..1283 +
1696949444.5990698-CDS-S-firma_F_contig1061:1169..12831696949444.5990698-CDS-S-firma_F_contig1061:1169..1283Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 1170..1283 +
1622815599.8209977-CDS-S-firma_F_contig1061:1941..21901622815599.8209977-CDS-S-firma_F_contig1061:1941..2190Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 1942..2190 +
1696949444.6125176-CDS-S-firma_F_contig1061:1941..21901696949444.6125176-CDS-S-firma_F_contig1061:1941..2190Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 1942..2190 +
1622815599.8316612-CDS-S-firma_F_contig1061:2507..25741622815599.8316612-CDS-S-firma_F_contig1061:2507..2574Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 2508..2574 +
1696949444.6268785-CDS-S-firma_F_contig1061:2507..25741696949444.6268785-CDS-S-firma_F_contig1061:2507..2574Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 2508..2574 +
1622815599.8472009-CDS-S-firma_F_contig1061:2871..29421622815599.8472009-CDS-S-firma_F_contig1061:2871..2942Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 2872..2942 +
1696949444.637977-CDS-S-firma_F_contig1061:2871..29421696949444.637977-CDS-S-firma_F_contig1061:2871..2942Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 2872..2942 +
1622815599.858823-CDS-S-firma_F_contig1061:3388..35261622815599.858823-CDS-S-firma_F_contig1061:3388..3526Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 3389..3526 +
1696949444.6499965-CDS-S-firma_F_contig1061:3388..35261696949444.6499965-CDS-S-firma_F_contig1061:3388..3526Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 3389..3526 +
1622815599.8707266-CDS-S-firma_F_contig1061:3983..41961622815599.8707266-CDS-S-firma_F_contig1061:3983..4196Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 3984..4196 +
1696949444.6655157-CDS-S-firma_F_contig1061:3983..41961696949444.6655157-CDS-S-firma_F_contig1061:3983..4196Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 3984..4196 +
1622815599.8823206-CDS-S-firma_F_contig1061:4744..49151622815599.8823206-CDS-S-firma_F_contig1061:4744..4915Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 4745..4915 +
1696949444.6752853-CDS-S-firma_F_contig1061:4744..49151696949444.6752853-CDS-S-firma_F_contig1061:4744..4915Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 4745..4915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1061.835.1prot_S-firma_F_contig1061.835.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1061 1170..4915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1061.835.1

>prot_S-firma_F_contig1061.835.1 ID=prot_S-firma_F_contig1061.835.1|Name=mRNA_S-firma_F_contig1061.835.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=341bp
MALRTAAAAIKRRSPRLSAEVNRSLSLHNGGSGAFTAAPGGTPRTSLSKG
GRHALVVKTRGRSSAPSSPSLAAATSPAGRRDFGTDTPATKRPRRVSKPK
GVVAAGVKKNACSSLGRTREERKRGEGFDVVIGVDEAGRGPFAGPVVAAA
CFIPPDIDIGGIQDSKKVAQHSDREALYKELTESPGVIWATSEVGSRRID
EINILEATKEAMTNCALEVCSKAAKTQTKKSKSSKPKPFILVDGNFTPAG
LAEVDSQYVIGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVYGFERHK
GYGTRAHSDAIREHGMVEIHRRSFLKKMEASGGKLSENKG*
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mRNA from alignment at S-firma_F_contig1061:1149..5538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1061.835.1 ID=mRNA_S-firma_F_contig1061.835.1|Name=mRNA_S-firma_F_contig1061.835.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4390bp|location=Sequence derived from alignment at S-firma_F_contig1061:1149..5538+ (Sphaerotrichia firma ET2_F female)
GCGGTTGCGGTTGTGGTCGTGATGGCTCTTCGAACGGCTGCAGCAGCCAT
CAAGAGGCGGTCACCGCGGCTTTCGGCAGAGGTGAACCGCAGTCTAAGTC
TACACAACGGCGGTAGTGGGGCTTTCACGGCAGCGGTAAGTATAGTGGTG
TAATGGCGTAGGGGTGAGCGGTTCGCAGATAAATCCGTGTTGGGCGTCTT
GATGTATTCGCTGCTAGTCGCAACTGCGTCATGAACTCAACAATATGTTC
CATAAACAGCAACAAGGGGTGAAGGGGGGTCCCGCGTAACTCGGTGGTGG
CACCCACCTTTGCCTGCTCTGTAATTTGTATGTCCTGTGTACAGCTGTAG
CATAAGTCACCATATAAACCAATTGCGATTCGGAGCGTTCACGAGTGCGC
CGGCGTCCGCTATTCTCGTATCAGTTCTCCGCTGATGCAGGTCATTCGTG
GGGATCGTATGTCTGGGTGCGCCATCCTCGTCGTAGGTGACAGAATCGAA
AGTTTAAATTTGAATTTGGTGACACACAGCCGATGTGTCCATCAAAAAGG
GGTCAAGCAGCCGTGTACTACACGTTCCGCGTACAAGCTGGATTCAGAAA
GTTCCGCAAGCAACTTTGCAGTCTACCGCGTGCGTGCGCTTTCTGCGAGG
CAACAGAGCACCCTTCGTATACCTACCTAGCCAGCTAACCCCCCCGGCGC
GCGGAGCGTGGACACAACTTGACCCAACCGCCGTTGCACCGAGCTGCTTA
TAGCTGAGCAATTTATCCCCTCTGCGTTTGTTGGGATCAACAGCCAGGCG
GAACGCCGCGCACGTCGTTGAGCAAGGGTGGCCGTCACGCTCTTGTCGTC
AAGACGCGAGGAAGATCTTCGGCACCATCGTCGCCATCACTAGCGGCAGC
AACGTCGCCTGCCGGACGACGAGATTTTGGCACCGATACCCCCGCAACGA
AGCGTCCGAGGCGGGTGTCCAAGCCGAAAGGCGTCGTCGCTGCCGGTGTC
AAGAAAAACGCGTGCTCCTCGTTGGGGAGGACGAGAGAGGAGGTGAGCGA
GCGAGGGGGAGATGGACAGAGAGAGCACACTGTCTGGCTGAGAGCCATTG
CACGACAAGCACGTGTATTTGAAGCCGCCGTTTCGAACTATGTCACACCA
GATGCCCTTTTTTCTTTTTTCGGACAGGATGCGTCAGTGTACCCTTCCGA
AACAACAAAAAGGCTGATAACTGTGTTGTAGATCCCGACGCTGATAACGG
AACGGCTGTATCTGAGCTTGAACATCTTTTGACCTTTCCGCCCTGCCTCC
CTGCGCATCTTTCCTGCGGCACTGGCACGCACACCCGCACAACCGTGCAC
ACAACTTAGAGGAAGCGTGGCGAGGGGTTCGATGTAGTGATTGGCGTCGA
CGAAGCAGGGCGCGGACCTTTCGCAGGTAACTTCCACAAGAGGCATGGCG
ACGGTGCTGATTAGCGTCGACGAGAACTTCTACCGTCCGTGTCTCGCGGG
TGCGGGGAGTGGGTCATACGAGTATACTGCACTCACTGCGTAGCAGACAT
TTTGTTTGGTAGAGCAACATCGTTCCACGGCGACGTTTCCTCTCGTACGC
ATTTTCCAAAGAGCATGCGTCATTCTGTCGAGATTGGCTGGTCACAGCAG
TTTCGGGTCGTGCGGCGGAAACCCTTTTCCCCACTTCCCTCGTTTACCTG
AATATCTCTGCTGCCTGTGGCAGGACCGGTGGTCGCAGCGGCGTGTTTTA
TTCCACCCGACATCGACATTGGTGGCATACAGGATAGCAAGAAGGTGCTT
ACGCAAAACCACGTTTTCTTGGTTGTGTGCAGCTGCTGCCGCAGCAAAAT
ATGAAATTCGTTGCTATTTCGTTACTACAACGGATGCTGATGGCGTTTAC
TTGTACCTGAGTTTTTTCGGCCGTGGTTTCAGATTCAACCACGTGTTCTG
TCGAATTGCTGGGGGCTGTGCGATGCGCTGTTTAGAGTGGACACTGCATG
CCAGAGCCTCATCGCCATCCCCACCCTTGCTTGGGGGCTGCAGCGAAAAT
ACGTTCGACACACCGGAGGACTGCTCTGATCGACTTAAGCGCGGTGCTAG
CCTCTCTTTCGCGTTTGACATGACGAGAGGGAGTTATCACTTGAAAAATA
TGGCAGCTGCTTTTGCGCAAAAAAAACGGGATCTAAGCGTATTCTGCTCG
ATTTGCGTCGTCCTACCACTGCTGTCATTTTCCGTCGCAGGTGGCGCAGC
ACAGCGACCGAGAAGCCCTGTACAAGGAGTTGACGGAGAGTCCAGGAGTT
ATATGGGCCACCTCGGAGGTCGGGAGCCGTCGCATCGACGAGATTAACAT
CCTGGAGGCCACCAAAGAGGCCATGACCGTACGTCGCTCGCGTGTTTTCT
TCCCGTGTTGCGGGGTTGTAACCTGCACAAGTCAGAATTTCGTCTTCTTG
GAACTCGTTTAGACAGGATTGTTTTGGAATTTTTGTCGCCGAGATCGGCA
ACGGCCGAGGCCACCACAGCAGAGGCACAGGGAGGGTAGGGCTATGCCCT
TGTCGTCTGCCCGTTGTTCGTCTGACGGACTAGGCGTCTCAGTGTACCGG
TTTCTTTTGGGAGTGTTCCTGTTATAGCCATTTTTCTTTTTCGTAGTAGA
CACTCGACACCCGGAGAGGTCAGCCAGGAAATGCCTCCGGTACCGAGGGA
AAACTACATGTATGTCTGATACTTCTAACCGTTACAATTTCAGCACTGAC
AACGACTGACGCTCCCTCCCGTTCCCCACTTTGTCCGGCCAATCTATCCC
TCCCATCCCCGCCTCTTTCGCGTGTGTTGTTGCAGAACTGCGCCCTTGAG
GTTTGCTCCAAAGCCGCCAAGACCCAAACCAAGAAGAGCAAGAGCTCGAA
ACCGAAACCATTCATTCTAGTGGACGGAAACTTCACCCCCGCGGGCCTCG
CGGAGGTGGACTCCCAGTACGTCATCGGCGGGGACGGTCTGGAGTACTGC
ATCGCCGCCGCTAGCATAATTGCAAAGGTCACGCGAGATCGGCTGATGGT
GAGAGTACAAACTAACCCTAGGTGCAGTTGACGTAGAAGTTGGTCGCTCG
TTCGAAGAGCGGCCAGGAGAGGGAAGAGAAGGGCCACTTAAAGCAGTGGT
GGTGAAAGAATCAACTGTAGTCCCAGCGACGTAGAAGTTGGTCGCTTGTT
CGAAGAGCGGCCAGGAGAGGGAAGAGAAGGGCCACTTAAAGCAGTGCTGG
CGAAAGAATCAACTGCTGTAGTCCCAGCGACGTAGAAGTTGGTCGCTTGT
TCGAAGAGCGGCCAGGAGAGGGAAGAGAAGGGCCACTTGAAGCAGTGCTG
GTGAAAGAATCAACTGTAGTCCCAGCGAATGCGGCCGCGAGTTGCCATCT
GCACTTTTTCTACAAGCGGGCGCTCTCCCGAACGCAGCGTCATCCCCAAC
AATCGTTCAATCGCTCACAAAATCACCCTTCTGCGGACACAAGCGTTCAG
ACATCTCACAGAAGTTCGTTACTACCAGAAGTTCGTTTTCCTCGGGGAGC
CGCTCTTCTTCACAAAACGCGATATGTCTCCTGGCTGTACACACAGATCG
AGTTCGGGGAACGCTGGCCCGTTTACGGGTTCGAGAGGCACAAGGGCTAC
GGGACAAGAGCCCACAGCGACGCCATTCGCGAGCACGGCATGGTGGAGAT
TCACCGCCGGAGTTTCCTGAAAAAAATGGAGGCTTCTGGCGGGAAACTGT
CCGAGAACAAGGGCTAGGGAAGATGAGGTTGACGCAGCCATAGCGCGGAG
ATGACAAAGTCATCAATCTACCGTCGTGGGGTTATCTCTTCATCATGACG
GTTGCCGATTTTTACGTGTCAGTTCGAGCTATTTACCCTTTCAAGACGCG
ACGAGATGTCTAGATACAATTTCAAATCATGTGTTGTCTCGTTGTTGCTC
GTGTTTCGCCATTGAGTGTTACCCTCTGTCGGTTTGGCTTTCAACTTATT
TGAGTTTTGGGGGATTCGTTTGTTACTGGATGCAGCTAGTTTGTGGACGT
TCAAAACGTTAGCCGCGGTCAAGTGGTAGGAACCATTGGATTTGTTGTGG
AGGCACTTGTCACCGGGATGTAATTGCTTGCCAGAGGGCCGCGTCTGCAG
CACGGCAGACACCATAATATCGATACCGTACTTTGTGATCGCCCGCTTCG
CTTTCCTTGAGAACTCGTACAGATAGCTCCAGTGCGAAAGACGGTTCCCA
GAGTCGAGAACATGAGATTCCTGCCACGAGGGTGTAATGGTAGGTTTTCA
CAAGTTTTCTACAAACGTCAGCAGTACACGTCCGTCCTGTGAATATCTCG
TTTTGTGTTGGATTCCGAAATGCTGGGTCTAACCCTGCAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1061:1149..5538+

>mRNA_S-firma_F_contig1061.835.1 ID=mRNA_S-firma_F_contig1061.835.1|Name=mRNA_S-firma_F_contig1061.835.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2046bp|location=Sequence derived from alignment at S-firma_F_contig1061:1149..5538+ (Sphaerotrichia firma ET2_F female)
ATGGCTCTTCGAACGGCTGCAGCAGCCATCAAGAGGCGGTCACCGCGGCT
TTCGGCAGAGGTGAACCGCAGTCTAAGTCTACACAACGGCGGTAGTGGGG
CTTTCACGGCAGCGATGGCTCTTCGAACGGCTGCAGCAGCCATCAAGAGG
CGGTCACCGCGGCTTTCGGCAGAGGTGAACCGCAGTCTAAGTCTACACAA
CGGCGGTAGTGGGGCTTTCACGGCAGCGCCAGGCGGAACGCCGCGCACGT
CGTTGAGCAAGGGTGGCCGTCACGCTCTTGTCGTCAAGACGCGAGGAAGA
TCTTCGGCACCATCGTCGCCATCACTAGCGGCAGCAACGTCGCCTGCCGG
ACGACGAGATTTTGGCACCGATACCCCCGCAACGAAGCGTCCGAGGCGGG
TGTCCAAGCCGAAAGGCGTCGTCGCTGCCGGTGTCAAGAAAAACGCGTGC
TCCTCGTTGGGGAGGACGAGAGAGGAGCCAGGCGGAACGCCGCGCACGTC
GTTGAGCAAGGGTGGCCGTCACGCTCTTGTCGTCAAGACGCGAGGAAGAT
CTTCGGCACCATCGTCGCCATCACTAGCGGCAGCAACGTCGCCTGCCGGA
CGACGAGATTTTGGCACCGATACCCCCGCAACGAAGCGTCCGAGGCGGGT
GTCCAAGCCGAAAGGCGTCGTCGCTGCCGGTGTCAAGAAAAACGCGTGCT
CCTCGTTGGGGAGGACGAGAGAGGAGAGGAAGCGTGGCGAGGGGTTCGAT
GTAGTGATTGGCGTCGACGAAGCAGGGCGCGGACCTTTCGCAGAGGAAGC
GTGGCGAGGGGTTCGATGTAGTGATTGGCGTCGACGAAGCAGGGCGCGGA
CCTTTCGCAGGACCGGTGGTCGCAGCGGCGTGTTTTATTCCACCCGACAT
CGACATTGGTGGCATACAGGATAGCAAGAAGGACCGGTGGTCGCAGCGGC
GTGTTTTATTCCACCCGACATCGACATTGGTGGCATACAGGATAGCAAGA
AGGTGGCGCAGCACAGCGACCGAGAAGCCCTGTACAAGGAGTTGACGGAG
AGTCCAGGAGTTATATGGGCCACCTCGGAGGTCGGGAGCCGTCGCATCGA
CGAGATTAACATCCTGGAGGCCACCAAAGAGGCCATGACCGTGGCGCAGC
ACAGCGACCGAGAAGCCCTGTACAAGGAGTTGACGGAGAGTCCAGGAGTT
ATATGGGCCACCTCGGAGGTCGGGAGCCGTCGCATCGACGAGATTAACAT
CCTGGAGGCCACCAAAGAGGCCATGACCAACTGCGCCCTTGAGGTTTGCT
CCAAAGCCGCCAAGACCCAAACCAAGAAGAGCAAGAGCTCGAAACCGAAA
CCATTCATTCTAGTGGACGGAAACTTCACCCCCGCGGGCCTCGCGGAGGT
GGACTCCCAGTACGTCATCGGCGGGGACGGTCTGGAGTACTGCATCGCCG
CCGCTAGCATAATTGCAAAGGTCACGCGAGATCGGCTGATGAACTGCGCC
CTTGAGGTTTGCTCCAAAGCCGCCAAGACCCAAACCAAGAAGAGCAAGAG
CTCGAAACCGAAACCATTCATTCTAGTGGACGGAAACTTCACCCCCGCGG
GCCTCGCGGAGGTGGACTCCCAGTACGTCATCGGCGGGGACGGTCTGGAG
TACTGCATCGCCGCCGCTAGCATAATTGCAAAGGTCACGCGAGATCGGCT
GATGATCGAGTTCGGGGAACGCTGGCCCGTTTACGGGTTCGAGAGGCACA
AGGGCTACGGGACAAGAGCCCACAGCGACGCCATTCGCGAGCACGGCATG
GTGGAGATTCACCGCCGGAGTTTCCTGAAAAAAATGGAGGCTTCTGGCGG
GAAACTGTCCGAGAACAAGGGCTAGATCGAGTTCGGGGAACGCTGGCCCG
TTTACGGGTTCGAGAGGCACAAGGGCTACGGGACAAGAGCCCACAGCGAC
GCCATTCGCGAGCACGGCATGGTGGAGATTCACCGCCGGAGTTTCCTGAA
AAAAATGGAGGCTTCTGGCGGGAAACTGTCCGAGAACAAGGGCTAG
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