mRNA_S-firma_F_contig106.823.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig106.823.1
Unique NamemRNA_S-firma_F_contig106.823.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig106.823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig106contigS-firma_F_contig106:51012..51612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size601
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig106.823.1prot_S-firma_F_contig106.823.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig106 51106..51465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.0406823-UTR-S-firma_F_contig106:51011..511051622815597.0406823-UTR-S-firma_F_contig106:51011..51105Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 51012..51105 +
1696949442.477818-UTR-S-firma_F_contig106:51011..511051696949442.477818-UTR-S-firma_F_contig106:51011..51105Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 51012..51105 +
1622815597.0619538-UTR-S-firma_F_contig106:51465..516121622815597.0619538-UTR-S-firma_F_contig106:51465..51612Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 51466..51612 +
1696949442.4949322-UTR-S-firma_F_contig106:51465..516121696949442.4949322-UTR-S-firma_F_contig106:51465..51612Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 51466..51612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.051039-CDS-S-firma_F_contig106:51105..514651622815597.051039-CDS-S-firma_F_contig106:51105..51465Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 51106..51465 +
1696949442.4862583-CDS-S-firma_F_contig106:51105..514651696949442.4862583-CDS-S-firma_F_contig106:51105..51465Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 51106..51465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig106.823.1

>prot_S-firma_F_contig106.823.1 ID=prot_S-firma_F_contig106.823.1|Name=mRNA_S-firma_F_contig106.823.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=120bp
MQSAFGFGWILHPCQKHVLVRHTAYIVKKPWSPTLNWIWCEVTRHVLELC
GSRAEGFAEMVWFVPLHVVRFREFSFHLCHISTTDIPLCNPYRTAVRYAR
APYPDKICCATPPRTYVAG*
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mRNA from alignment at S-firma_F_contig106:51012..51612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig106.823.1 ID=mRNA_S-firma_F_contig106.823.1|Name=mRNA_S-firma_F_contig106.823.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=601bp|location=Sequence derived from alignment at S-firma_F_contig106:51012..51612+ (Sphaerotrichia firma ET2_F female)
GGCTGTGGAGGCTCCGACCTGGTGCCGTGCTGCTGCCTGCTGCTGAGTCG
AATGTGAGAGGTCGGCGGTAGTTGCATGCAGTGCGTCACGAGAGATGCAA
TCCGCGTTTGGCTTTGGGTGGATACTGCATCCATGTCAGAAACATGTGCT
GGTACGCCACACAGCGTACATTGTGAAGAAGCCGTGGAGTCCAACCCTGA
ACTGGATTTGGTGCGAAGTGACACGCCACGTCCTTGAGCTTTGTGGTTCA
CGTGCCGAAGGGTTTGCAGAGATGGTATGGTTTGTGCCTCTGCACGTGGT
TCGTTTTCGTGAGTTTTCGTTCCATTTGTGTCATATATCCACTACAGATA
TACCCCTTTGTAACCCGTACCGTACGGCGGTACGATATGCTCGTGCGCCG
TATCCCGATAAGATTTGCTGCGCCACACCACCCCGTACCTATGTCGCTGG
CTAAACAATACGGCGGACTGATTTCGTTCAACGTGCCTGGCGGGTGAAAT
TTAGTGCGCACTGCGTGTTGGCTTTTTCTTGGCAGGGAAAAAGTTGCACC
GTTGCACCTCTTACCCCTGAGGACGCGAGTTTCGTCTCCCGCTGCTGCGG
C
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Coding sequence (CDS) from alignment at S-firma_F_contig106:51012..51612+

>mRNA_S-firma_F_contig106.823.1 ID=mRNA_S-firma_F_contig106.823.1|Name=mRNA_S-firma_F_contig106.823.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=720bp|location=Sequence derived from alignment at S-firma_F_contig106:51012..51612+ (Sphaerotrichia firma ET2_F female)
ATGCAATCCGCGTTTGGCTTTGGGTGGATACTGCATCCATGTCAGAAACA
TGTGCTGGTACGCCACACAGCGTACATTGTGAAGAAGCCGTGGAGTCCAA
CCCTGAACTGGATTTGGTGCGAAGTGACACGCCACGTCCTTGAGCTTTGT
GGTTCACGTGCCGAAGGGTTTGCAGAGATGGTATGGTTTGTGCCTCTGCA
CGTGGTTCGTTTTCGTGAGTTTTCGTTCCATTTGTGTCATATATCCACTA
CAGATATACCCCTTTGTAACCCGTACCGTACGGCGGTACGATATGCTCGT
GCGCCGTATCCCGATAAGATTTGCTGCGCCACACCACCCCGTACCTATGT
CGCTGGCTAAATGCAATCCGCGTTTGGCTTTGGGTGGATACTGCATCCAT
GTCAGAAACATGTGCTGGTACGCCACACAGCGTACATTGTGAAGAAGCCG
TGGAGTCCAACCCTGAACTGGATTTGGTGCGAAGTGACACGCCACGTCCT
TGAGCTTTGTGGTTCACGTGCCGAAGGGTTTGCAGAGATGGTATGGTTTG
TGCCTCTGCACGTGGTTCGTTTTCGTGAGTTTTCGTTCCATTTGTGTCAT
ATATCCACTACAGATATACCCCTTTGTAACCCGTACCGTACGGCGGTACG
ATATGCTCGTGCGCCGTATCCCGATAAGATTTGCTGCGCCACACCACCCC
GTACCTATGTCGCTGGCTAA
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