mRNA_S-firma_F_contig10584.793.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10584.793.1
Unique NamemRNA_S-firma_F_contig10584.793.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10584.793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10584contigS-firma_F_contig10584:925..5070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_009020.1
Exons3
Model size1018
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10584.793.1prot_S-firma_F_contig10584.793.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10584 1217..1986 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.2244363-UTR-S-firma_F_contig10584:924..12161622815595.2244363-UTR-S-firma_F_contig10584:924..1216Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10584 925..1216 -
1696949441.4148166-UTR-S-firma_F_contig10584:924..12161696949441.4148166-UTR-S-firma_F_contig10584:924..1216Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10584 925..1216 -
1622815595.2753835-UTR-S-firma_F_contig10584:1986..20031622815595.2753835-UTR-S-firma_F_contig10584:1986..2003Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10584 1987..2003 -
1696949441.447214-UTR-S-firma_F_contig10584:1986..20031696949441.447214-UTR-S-firma_F_contig10584:1986..2003Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10584 1987..2003 -
1622815595.2902942-UTR-S-firma_F_contig10584:4904..50701622815595.2902942-UTR-S-firma_F_contig10584:4904..5070Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10584 4905..5070 -
1696949441.4548845-UTR-S-firma_F_contig10584:4904..50701696949441.4548845-UTR-S-firma_F_contig10584:4904..5070Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10584 4905..5070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.2428784-CDS-S-firma_F_contig10584:1216..13801622815595.2428784-CDS-S-firma_F_contig10584:1216..1380Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10584 1217..1380 -
1696949441.4260695-CDS-S-firma_F_contig10584:1216..13801696949441.4260695-CDS-S-firma_F_contig10584:1216..1380Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10584 1217..1380 -
1622815595.2598093-CDS-S-firma_F_contig10584:1607..19861622815595.2598093-CDS-S-firma_F_contig10584:1607..1986Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10584 1608..1986 -
1696949441.4384363-CDS-S-firma_F_contig10584:1607..19861696949441.4384363-CDS-S-firma_F_contig10584:1607..1986Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10584 1608..1986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10584.793.1

>prot_S-firma_F_contig10584.793.1 ID=prot_S-firma_F_contig10584.793.1|Name=mRNA_S-firma_F_contig10584.793.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=181bp
MAGRSTSSLVPVIVVLVFLLAGLVAGAPSDAHLVGAAADDIVPHGTMLRR
ALQTTTSESECAAEQIACTSDASCPECSLAFGGALLGDCGDVDDDATCSD
AQEAFCCAIDVASDDCIDNDAFDDWIGCQVENSAFLSICEVEISDCSGAS
GRSSSWGAACIFLCSTAVAGALVSTFGIVV*
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mRNA from alignment at S-firma_F_contig10584:925..5070-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10584.793.1 ID=mRNA_S-firma_F_contig10584.793.1|Name=mRNA_S-firma_F_contig10584.793.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4146bp|location=Sequence derived from alignment at S-firma_F_contig10584:925..5070- (Sphaerotrichia firma ET2_F female)
TTTCATTCCTCCGTCAATCAATCTTTCGCTTTTGCCGCCCAACAAGGGGC
ACACGTCGCAGGCAATCAACTCGAGTATCAGTGTGCGCTTTGTGCTCAAG
AACGACGAGTCCCAGCGCCACCGTGCATCTATCGTCCCTGCACCTGCATA
CCGGGCGTGCTATCAGGTGAGGGAGTGCGGAGAGATCCTCCTACCAAACT
TGTGCCAAAACTTTGGTGCACTCTTTCCAGAAGGCTGTTTCGTGGTCGCG
CATTAGTCGTGTGCACCTGGCGCGCAGCCGACAAACTCGCGGGACAGGCA
TGCTACCTTCCCAGAGATGTCCTGCGCGTGGCCTGACAAGCTGGTTTGGA
TGCCGTCCCGCCTTTTTTTTATTTTCAGCTGAAGTTTGCGTTCTTCCGCG
CAACTCTTTTTTTTCCTGGCACCGAAATGCTGCGAAAAAGACACGCCTTT
GAAGTTTGAGGAAGCGCGGTTGTACACGGGGCGAAGCTAGATCCTATGAT
CCGTTCCCACTGGCGCCGCCTCTCTCTTTGTGTAGCTTCCCTCTGTACCG
TGGATACGTCTGTGCGCCCTCGCTACTGCTGCTGGCTGCCCCTGTGTGTC
GCGCACGAGGCAAAGAAAACGTACCACCCGGACGACCATAAAAAAAAGCG
TGACGATTGCGTAGACATCGGGGACACGGCAAAAAAAGCTGTTTCATCCC
AGCCGTATACAGCATCAAAGGTCCGCACGAGGCTTACGCCGTAGACCTCT
AGCTTCAACGATACAATGAAGCGCTTCCCACTTCGTTGCCAACTCAACCC
AAGAGTAAAAGGTATGCTGCAAACAGTAGACCTGCTTCACACCACATCCC
CACTGGCAAAATGGAAGTTCTCTGACGCGGGTGATTTTTCGCAGACAAGT
GCAGAGATTAGCAGTGTACGAGACGACACGCACGCGGCAACCCTGGTGAA
GGTCGGTGCCTAGAGTATGGGGTACCTTACAAGACGTCCAACAGCAGTAG
CGAGGGCGCATAGGCGCTACCACCGCATAGAGGGGAGATACACAACGAGA
GAGGCGGCACCAGTGGGAACGGATTATCATATCTGGGTTCTCCCCGCGTA
AAACTCTTCAAAAATTCGGAGGTGCGTCTTTTTCGCCCGCTAGACAACGC
ACTGATCTGAAATCGTCTTCGCTGTCAACTCCACAAACAAATGAACGTCA
TTTGCGTGGGCGTGGCGTAGCAGTGGGAGTCCTGAATCGGTAGCAAAATG
CATCGCGGTGGACACAAGTGTGCTGTGGGTAATTTTTTGTCGGTTCAACA
AGCACTCTAATTCTTTGCAGAAATCGTCGACCGTTGGGCGTATTTAACTT
CTACCCAGGGTTGCCGGGCGCGTTCTTTTATTTCCTTTTTCGCTCTTCTT
TTTTCATGTGTGGCCTACCTGATTACCGCAATACAACGCCCCTGTAGGGT
TCGTTCTTGCTTGCTGAAGCGACGTCAGGTTACACCATGGGTGTTCATAC
AAGGCAGTGCCAACAAAGCAGCATGTGTGATGATGCACAGAGCACAGCAA
CAGAGCAGTCGGCGTGAACCCATTCAGCAACCGCAATTCGTGACATGCGT
ATGTATGTTACCTACAGTTTCTTCGATACCCAACAGCTTCCTACAGTTTC
GCAAGCGACCTCATGGGCATTCTGTGGGTGTGCAGCGCAGAAGCAGCGTC
TCCGTGCGTTTCGCCAGGGGTATCTAGGTGCTACGCCGAGGAACCAGTTT
TTGGTGATGGTCTATATCGCTGAGTTCGCCAACACGCATGTACGCCATGA
ACCGGGTATCGCCACCTAATTGATTGACCCTGTCCCCCCGTGTTGTTTTT
CAGAATATGCTGACCGACAATCCTTATGCAAACCTTCTCGAACTTCCACG
GAGACTGTTTATACACGCTCCCGTACACGTGAATTTCTTCCCAAGCGGCT
GACCCATATTTCTCGAAGACGGACTTCCGTCGCCAAATGCAGTTCTTTGG
CTATTCTACACTCCAGCATTGACATGTGTTTCGACGAACATCGGCGCACT
TCCGTGACGAATTTCAACACCTTTCGTCCTTGTAGACACGTTTACGGACG
TTTCATGCTCGCGTCGCAATTCCCCGTTCGTCAATTCCGCCTCTACGGCC
TCAGAGCACCATAGACAGTTGGGCCTCGAAAAGATATTACACTTCTTGAT
CACACTGTGTTGGAAAATGAGCCGGGCACACCGTTACTCATTTCTTCTTT
CTTCCTCTCGTGAGCGGGGAGGCATTTCGGTAATGCTCGCATCGCATTCC
CACGTTGGTTGCCTCCGCCTTGGCGGCCTCTTCTTGCTTTCGCTTCCGAT
TGTGTCCCCTCCGCCCGTAAGGGGGGGGGAGCTCTCGGTGCCATAGTAAT
AATATTTCAACAGAGCTTTTGTTTTGAGTCAGTGCTGCTTCGACAAGCAT
GCGCAACCTTTAGGAAATGCGTCAGTTCGTCCGCGACCTAGAGGGCGTCT
TTGAACGATCAGGTCGTCTCCCACCTTGCGCCACCGACCATGCCACGGCG
GGTACTCGAGTCTCCATCGTGGCCACCTCCACCAACAAACGGATATCGTG
CCGTTGTTGGAAAGGCCTCTTTCCAGGACATGTACATGTAGCCTGAAGGT
TCGGAGTCTACTGGTTTGCTTGTTGGGAGAACAGTCGCTATCAATCCTGG
CGCATCCGAGCAGGCGAGAGCCACGGAGACGCAGTTGACAACCTAATTGA
GTTGCGATGTTCCTCAGCACCACCCAACGATCCTATTTAGAGGTGTTGCT
TTTGGGCCATAGATTTGTTTCGGGGGGGGGAGAGAACCACGTGGTTGTGG
GCGCGTATTTGTGCTGGGGCCATGCACATAATAATAGACCTAAATACCTA
AAACGGCGCGCGACATCACGGCCCAGCGATGAGAAAACGCTAAACGCGGA
CACGTCCAACATCGTATCCATTGTCGTCGTCTCCCTTACTTTCAATATCA
GCTGACTGTTACTCTTCGCCTCAACGCAACAAACCCGGCTCTCGCCCATC
GTGTCGCTCTGCACCAGACTTGAAGCGAGCAAACATGGCCGGAAGGAGTA
CCTCTTCGCTTGTGCCAGTCATTGTGGTCCTCGTTTTCCTGCTTGCGGGG
CTGGTGGCAGGGGCACCGTCCGACGCGCATCTTGTCGGAGCCGCGGCGGA
CGACATCGTGCCGCACGGTACGATGTTGAGGAGGGCCCTGCAGACGACGA
CCTCGGAATCCGAGTGTGCCGCTGAGCAAATTGCCTGTACTTCAGACGCG
TCGTGCCCCGAGTGCTCGCTCGCGTTTGGGGGGGCGCTCTTGGGAGACTG
CGGCGATGTGGACGATGACGCGACTTGCAGCGACGCACAGGAAGCCTTCT
GCTGCGCGATCGACGTCGCCAGCGACGACTGCATTGACAACGACGCGTTC
GATGATTGGATAGGTTCGTGCTGACCCCTGGGCGAGCTCGGCGGATGATC
TGAGCAAGGTTGAGGCATTTAGTTGGTATCCTTGCCGCCTTGCTCCTACC
AGCAGACTGGCGTGCGTAGACTTCTGCCCCAACACGTTCACTGTGTACTT
CGGTTATTCGTTGATGAGACTGATCAGATGGTGGCAGTTCACATCACCAA
CTAAACCACCTCCACCTTCCCAACTTGCGGCTTCGCTCAGGCTGCCAAGT
GGAAAACAGCGCGTTTCTTTCAATCTGCGAGGTCGAGATCAGCGACTGCA
GCGGGGCTTCAGGCCGCTCCTCCTCTTGGGGTGCTGCGTGCATCTTCCTC
TGCTCTACCGCTGTGGCTGGCGCCCTTGTTTCCACCTTCGGCATCGTCGT
GTAGACATCTACCTCTTCTGCGATTTGCTGGGTCGAAGTCCCGTTCGGTA
CTAACGGCTGGGAGAACATGTTGTCAAATGACCGGCAGCGTACGTTGAGT
TCTGATTGCAGCAACTAGTCTTTGTTTGACTAGAAAAGTAGCAATACAGT
ATGTATTGCAATGCCGACGAGTATCGTCGGCTTTGCCTGTCCCAAGCGTG
CTCCTCTTGTTTTTGCTTTTTTGCTAGAAGTAACGGCCGATCGTGGCGAT
ATGACGGGAAGGCAGAAGGCACTGAGCAACAAGTATTTTAGTATCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10584:925..5070-

>mRNA_S-firma_F_contig10584.793.1 ID=mRNA_S-firma_F_contig10584.793.1|Name=mRNA_S-firma_F_contig10584.793.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1086bp|location=Sequence derived from alignment at S-firma_F_contig10584:925..5070- (Sphaerotrichia firma ET2_F female)
ATGGCCGGAAGGAGTACCTCTTCGCTTGTGCCAGTCATTGTGGTCCTCGT
TTTCCTGCTTGCGGGGCTGGTGGCAGGGGCACCGTCCGACGCGCATCTTG
TCGGAGCCGCGGCGGACGACATCGTGCCGCACGGTACGATGTTGAGGAGG
GCCCTGCAGACGACGACCTCGGAATCCGAGTGTGCCGCTGAGCAAATTGC
CTGTACTTCAGACGCGTCGTGCCCCGAGTGCTCGCTCGCGTTTGGGGGGG
CGCTCTTGGGAGACTGCGGCGATGTGGACGATGACGCGACTTGCAGCGAC
GCACAGGAAGCCTTCTGCTGCGCGATCGACGTCGCCAGCGACGACTGCAT
TGACAACGACGCGTTCGATGATTGGATAGATGGCCGGAAGGAGTACCTCT
TCGCTTGTGCCAGTCATTGTGGTCCTCGTTTTCCTGCTTGCGGGGCTGGT
GGCAGGGGCACCGTCCGACGCGCATCTTGTCGGAGCCGCGGCGGACGACA
TCGTGCCGCACGGTACGATGTTGAGGAGGGCCCTGCAGACGACGACCTCG
GAATCCGAGTGTGCCGCTGAGCAAATTGCCTGTACTTCAGACGCGTCGTG
CCCCGAGTGCTCGCTCGCGTTTGGGGGGGCGCTCTTGGGAGACTGCGGCG
ATGTGGACGATGACGCGACTTGCAGCGACGCACAGGAAGCCTTCTGCTGC
GCGATCGACGTCGCCAGCGACGACTGCATTGACAACGACGCGTTCGATGA
TTGGATAGGCTGCCAAGTGGAAAACAGCGCGTTTCTTTCAATCTGCGAGG
TCGAGATCAGCGACTGCAGCGGGGCTTCAGGCCGCTCCTCCTCTTGGGGT
GCTGCGTGCATCTTCCTCTGCTCTACCGCTGTGGCTGGCGCCCTTGTTTC
CACCTTCGGCATCGTCGTGTAGGCTGCCAAGTGGAAAACAGCGCGTTTCT
TTCAATCTGCGAGGTCGAGATCAGCGACTGCAGCGGGGCTTCAGGCCGCT
CCTCCTCTTGGGGTGCTGCGTGCATCTTCCTCTGCTCTACCGCTGTGGCT
GGCGCCCTTGTTTCCACCTTCGGCATCGTCGTGTAG
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