mRNA_S-firma_F_contig10574.783.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10574.783.1
Unique NamemRNA_S-firma_F_contig10574.783.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: D7G825_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G825_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.000e-52
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 3 
Query:   54 MEPSGEYFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDFR 329
            ME   E+FGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLR+HGT GLPS ALAQFQGPALLV+NDGVFTDTDFR
Sbjct:    1 MEQKEEWFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGTEGLPSLALAQFQGPALLVFNDGVFTDTDFR 92
[Close]
BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: A0A3M6VS29_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VS29_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.300e-38
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 3 
Query:   72 YFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDFR 329
            YFG+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD R+H TT L    L  FQGP+LLV+N+  FTD DF+
Sbjct:    6 YFGDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHATTKLAYEKLGPFQGPSLLVHNNATFTDADFQ 91
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BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: F2E0J6_HORVV (Predicted protein (Fragment) n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E0J6_HORVV)

HSP 1 Score: 132 bits (333), Expect = 2.500e-37
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 3 
Query:   45 RARMEPSGEYFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDF 326
            RA   P G    EDFGQ++DLT RIRE+L NYPEGT+ L+EL+QNADDAGA  VRLCLDLR HG + L +PALAQ+QGPALL +ND  FTD DF
Sbjct:    4 RAGHGPGGTMLLEDFGQRVDLTRRIREVLANYPEGTTALRELIQNADDAGASRVRLCLDLRAHGASSLLAPALAQWQGPALLAHNDAAFTDDDF 97
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BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: B4FF74_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=B4FF74_MAIZE)

HSP 1 Score: 130 bits (327), Expect = 1.130e-36
Identity = 64/93 (68.82%), Postives = 72/93 (77.42%), Query Frame = 3 
Query:   54 MEPSGE--YFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDF 326
            M+P G      EDFGQ++DLT RIRE+L NYPEGT+ L+EL+QNADDAGA  VRLCLD R HG   L SPALAQ+QGPALL YND VFTD DF
Sbjct:    1 MDPGGGGGMLLEDFGQRVDLTRRIREVLANYPEGTTALRELIQNADDAGAGRVRLCLDRRSHGRASLLSPALAQWQGPALLAYNDAVFTDEDF 93
[Close]
BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: UPI001890175F (sacsin-like n=1 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI001890175F)

HSP 1 Score: 127 bits (320), Expect = 8.080e-36
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 3 
Query:   54 MEPSGEYFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDF 326
            M+P G    EDFG+++DLT RIRE+L NYPEGT+ L+EL+QNAD+AGA  VRLCLD R HG   L +PALAQ+QGPALL +ND  FTD DF
Sbjct:    1 MDPGGTMLVEDFGRRVDLTRRIREVLANYPEGTTALRELMQNADNAGASRVRLCLDRRAHGACSLLAPALAQWQGPALLAHNDAAFTDDDF 91
[Close]
BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: G4YZA0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZA0_PHYSP)

HSP 1 Score: 138 bits (347), Expect = 1.580e-35
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 3 
Query:   54 MEPSGEYFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDFR 329
            M  +  YFG+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD R+H +TGL    L  FQGP+LLV+N+  FTD DF+
Sbjct:    1 MVDADVYFGDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHASTGLAYEKLGSFQGPSLLVHNNATFTDADFQ 92
[Close]
BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: W2NNW2_PHYPR (UBA domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NNW2_PHYPR)

HSP 1 Score: 137 bits (346), Expect = 2.120e-35
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 3 
Query:   54 MEPSGEYFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDFR 329
            M  +  YFG+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD R+H  TGL    LA FQGP+LLV+N+  F+D DF+
Sbjct:    1 MVDADVYFGDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHAATGLAYEKLASFQGPSLLVHNNATFSDADFQ 92
[Close]
BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: A0A6A3FKD4_9STRA (UBA domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FKD4_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.130e-35
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 3 
Query:   54 MEPSGEYFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDFR 329
            M  +  YFG+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD R+H +TGL    L  FQGP+LLV+N+  FTD DF+
Sbjct:    1 MVDADVYFGDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHASTGLAYEKLESFQGPSLLVHNNATFTDADFQ 92
[Close]
BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: A0A6A4E802_9STRA (RING-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E802_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.150e-35
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 3 
Query:   54 MEPSGEYFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDFR 329
            M  +  YFG+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD R+H +TGL    L  FQGP+LLV+N+  FTD DF+
Sbjct:    1 MVDADVYFGDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHASTGLAYEKLESFQGPSLLVHNNATFTDADFQ 92
[Close]
BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Match: A0A329RM56_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RM56_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.160e-35
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 3 
Query:   54 MEPSGEYFGEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRRHGTTGLPSPALAQFQGPALLVYNDGVFTDTDFR 329
            M  +  YFG+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD R+H  TGL    LA FQGP+LLV+N+  F+D DF+
Sbjct:    1 MVDADVYFGDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHAATGLAYEKLASFQGPSLLVHNNATFSDADFQ 92
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10574.783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G825_ECTSI1.000e-5291.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3M6VS29_9STRA2.300e-3874.42Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
F2E0J6_HORVV2.500e-3767.02Predicted protein (Fragment) n=2 Tax=Hordeum vulga... [more]
B4FF74_MAIZE1.130e-3668.82Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]
UPI001890175F8.080e-3664.84sacsin-like n=1 Tax=Triticum dicoccoides TaxID=856... [more]
G4YZA0_PHYSP1.580e-3570.65Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
W2NNW2_PHYPR2.120e-3570.65UBA domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6A3FKD4_9STRA2.130e-3570.65UBA domain-containing protein n=4 Tax=Phytophthora... [more]
A0A6A4E802_9STRA2.150e-3570.65RING-type domain-containing protein n=6 Tax=Phytop... [more]
A0A329RM56_9STRA2.160e-3570.65Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10574contigS-firma_F_contig10574:2730..4673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.6435533-CDS-S-firma_F_contig10574:2729..28071622815593.6435533-CDS-S-firma_F_contig10574:2729..2807Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10574 2730..2807 +
1696949440.5262268-CDS-S-firma_F_contig10574:2729..28071696949440.5262268-CDS-S-firma_F_contig10574:2729..2807Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10574 2730..2807 +
1622815593.6574736-CDS-S-firma_F_contig10574:4406..46731622815593.6574736-CDS-S-firma_F_contig10574:4406..4673Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10574 4407..4673 +
1696949440.5355916-CDS-S-firma_F_contig10574:4406..46731696949440.5355916-CDS-S-firma_F_contig10574:4406..4673Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10574 4407..4673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10574.783.1prot_S-firma_F_contig10574.783.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10574 2730..4673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10574.783.1

>prot_S-firma_F_contig10574.783.1 ID=prot_S-firma_F_contig10574.783.1|Name=mRNA_S-firma_F_contig10574.783.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=115bp
TTTQFPERGRGEQQDGPGWSQAENISARTSGKRSTSPCESARSCATTPKA
RRSSRSSCRTPTMRGRGRCGCASTYAGTERRGSPALPSLSFRGRRCWCTT
TGCLPTRTSGGHRP*
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mRNA from alignment at S-firma_F_contig10574:2730..4673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10574.783.1 ID=mRNA_S-firma_F_contig10574.783.1|Name=mRNA_S-firma_F_contig10574.783.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1944bp|location=Sequence derived from alignment at S-firma_F_contig10574:2730..4673+ (Sphaerotrichia firma ET2_F female)
ACCACCACGCAGTTCCCCGAAAGGGGTAGAGGGGAGCAGCAAGACGGGCC
AGGATGGAGCCAAGCGGAGAATATTTCGGTGAGTGCACGCGTCGAGTGCA
TGGCCAGAGTTGTCCGCTTTCGCGCAATGTCTCCTCCCGCTGCCTGGTAC
TGCTGTGCCGTAGCGGAGGATTGTTGCGTTTTGAAAGCATCTGCAAGTAC
CCAGTTTTGTGTGCAGTGGCTTGCTTGCTGGTCCTCGACAGGTGCTCTCC
GCATGTTACACACATACACAAGGGTTTCTGCTGCGTAGAAGCCACTCACT
CTACATGCGTTCTGCTCTTTTCTGGCCGGGGAGAGAGAGCTTTTGCTCAC
CAACAAACGTGTTCAAACTCACACATGCAAATCTCGCCGCAGAAAAATGG
CCTACTGCTGTAGCACAGCAGGGGCACCCCATCGTGCGCAGCGCAACGTT
GGGAAGCCTACATCGCAGTACGTTTTGTTGTTGGGCACTTCGAGGTGTGA
ATAACAGTGGCTTGAGTGTTGCTGCCTCTCATCGGATGGCAGCTAGCTTG
CTTGTTCGCTTCGTGCACAGCAGCGTCGAATTCACAAATTCACAGGACGC
ACACGAACGTGAAAATGAAATCAATAGAAAACGACCGCCGCGAGAGGTAG
TCAAGACTAGATATGTACTTTGTTGTACTGCTGCCTCGAGGGGGAAAGAA
CTCCGCAGGCCAGGCGTCACAGAATGGAATACTTTTTTTGGGTCGTCCAT
CCCTGCGAAAAGCGCGAGAGGATGACTTGTGCCAGTGACAAAAGAGGGGA
GAGCACCCGGCGGGGGGCGGGCTACTGTCTGTACCCGTGTTACTGCGGAA
ACGACATTTGAGTCAAGTCTACCAAGTACGTATAATATAGAAGTACACAT
TTGGCACTAATTTACAGCATTTGTCGCTACGTTCTCCGTATAGTGTAAGT
ATTTCTTGCTTCTCTCCGCTTCTCTCCGCTCTCCGCGTGGCGCTACTGAA
GCCGGGTGGCAAGATAATGTGAAGGGGGGACCCGGAAAACAAAAAACACG
TAGACTACGAACACCTCCTATTTGGCACTAGTCTACAAGTCATTCGCTTC
TCTTCTCTTCTCTCCGCGTGGCGCTGTACGGAAGCGTGGTGGCAAGGGCA
AGGCAGGGATCGTCTAGTCTAATGTGCTAATGTGGGGACCACACAACGGG
AGTAGTCTAAAGTATTTACTTCCAAGTAGTGTAGTTTTTCTCTCTTCTCG
CCACTAAATTACTGCTGTCAAGGACTGCTTTCGCCGCACAACTTGACCGG
GTTCGATTTCTCCGACGCAGACAAGCAGACAAGCTCGCTTCGCCTCGCCT
TGCCACCCGCGCACGGCAGGCACGAGCGCCGATAGCGCCGATCTGATCTC
ATCTGATCTCATCTAGGAGTATAAATGTAGATACCAGTATTGATTCCGCG
GAATTAGGCGTATTCGAAGTAAGTATACGGAATGTCGACGAGGGGGACCC
ACACCTTTGGGGATCTTTGTTATACCCCCCCCCCCGCCCCCCGCCCCCCG
CCCCCCTTCTCTCCCGCTCTCTCTCTCTGTCTCTCGCTCTCTCGCGAACT
CCCCTTATTTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCGCT
CTCGCTCTCGCTCTCTCGCGAACTCAGGCGAGGACTTCGGGCAAAAGATC
GACCTCACCGTGCGAATCCGCGAGATCCTGCGCAACTACCCCGAAGGCAC
GTCGATCCTCAAGGAGCTCGTGCAGAACGCCGACGATGCGGGGGCGCGGG
AGGTGCGGCTGTGCCTCGACCTACGCCGGCACGGAACGACGGGGCTCCCC
AGCCCTGCCCTCGCTCAGTTTCAGGGGCCGGCGCTGCTGGTGTACAACGA
CGGGGTGTTTACCGACACGGACTTCAGGTGGGCACCGGCCGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10574:2730..4673+

>mRNA_S-firma_F_contig10574.783.1 ID=mRNA_S-firma_F_contig10574.783.1|Name=mRNA_S-firma_F_contig10574.783.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=690bp|location=Sequence derived from alignment at S-firma_F_contig10574:2730..4673+ (Sphaerotrichia firma ET2_F female)
ACCACCACGCAGTTCCCCGAAAGGGGTAGAGGGGAGCAGCAAGACGGGCC
AGGATGGAGCCAAGCGGAGAATATTTCGACCACCACGCAGTTCCCCGAAA
GGGGTAGAGGGGAGCAGCAAGACGGGCCAGGATGGAGCCAAGCGGAGAAT
ATTTCGGCGAGGACTTCGGGCAAAAGATCGACCTCACCGTGCGAATCCGC
GAGATCCTGCGCAACTACCCCGAAGGCACGTCGATCCTCAAGGAGCTCGT
GCAGAACGCCGACGATGCGGGGGCGCGGGAGGTGCGGCTGTGCCTCGACC
TACGCCGGCACGGAACGACGGGGCTCCCCAGCCCTGCCCTCGCTCAGTTT
CAGGGGCCGGCGCTGCTGGTGTACAACGACGGGGTGTTTACCGACACGGA
CTTCAGGTGGGCACCGGCCGTAGGCGAGGACTTCGGGCAAAAGATCGACC
TCACCGTGCGAATCCGCGAGATCCTGCGCAACTACCCCGAAGGCACGTCG
ATCCTCAAGGAGCTCGTGCAGAACGCCGACGATGCGGGGGCGCGGGAGGT
GCGGCTGTGCCTCGACCTACGCCGGCACGGAACGACGGGGCTCCCCAGCC
CTGCCCTCGCTCAGTTTCAGGGGCCGGCGCTGCTGGTGTACAACGACGGG
GTGTTTACCGACACGGACTTCAGGTGGGCACCGGCCGTAG
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