mRNA_S-firma_F_contig10570.780.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10570.780.1
Unique NamemRNA_S-firma_F_contig10570.780.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: A0A6G0WP54_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WP54_9STRA)

HSP 1 Score: 205 bits (521), Expect = 3.910e-62
Identity = 110/228 (48.25%), Postives = 147/228 (64.47%), Query Frame = 1
Query:    1 RYPDL-SPGGVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKPDGYVKGEVRKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGASL-AVRMGAVVTATTAVRWLLVNNGVKLPAW 678
            R+P+L SP G LR  D+ GTAVFA SGS+TA  +G D+ G ++VG +TA GGGT RDA++LNK PFW+EEWEY+ L  AAA  T  +W  L P   +      +  +  GGEG+ +   D+  +G FAV+GAMNGIR  C  L+ + CGM TATFGGMTRD L  RPVRILH + + YA VAF++A  Y+A+RG+   L  +R+ + V    A+R     +G + P W
Sbjct:   48 RWPNLTSPTGCLRSLDWFGTAVFAVSGSLTAVTSGCDLFGSVLVGTITATGGGTLRDALVLNKSPFWVEEWEYLVLSAAAAAGTFYLWGQLSPGKEIIEGSGMTLKSADGGEGTLLDWGDAIGIGAFAVIGAMNGIRAQCPLLVSSICGMMTATFGGMTRDTLLNRPVRILHPYADTYAPVAFTTATAYLAMRGIAPRLQGIRIASCVALGVAMRQQASTHGWRFPHW 275          
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: A0A2R5GH45_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GH45_9STRA)

HSP 1 Score: 202 bits (515), Expect = 5.920e-61
Identity = 112/235 (47.66%), Postives = 147/235 (62.55%), Query Frame = 1
Query:    1 RYPDLSPG-GVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKPDGYVKGEVRKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPV------RILHSHEEPYATVAFSSALGYMALRGVGASLAVRMGAVVTATTAVRWLLVNNGVKLPAWGE 684
            RYP LS   G+LR ADY GT  FA SG+ITAG  GMD  G  IVG   A+GGGT RDAI+L+K+PFW+EE+EY+ +  AAALATSM+WPTL  DGY+K +          GEG  +   D+  +G FAV+G  N +R   HP++  TCGM TATFGG+TRDVL   P       RI+HSH + YA+ AF+ A  Y+  R +   LAVR+ + V  +  +R+      + LP+W +
Sbjct:   51 RYPSLSSSRGLLRGADYLGTVAFAMSGAITAGTVGMDAVGCTIVGTTVALGGGTMRDAIILHKQPFWVEEYEYLLMAAAAALATSMLWPTLPSDGYLKDDNE--------GEGKLLWAGDALGVGAFAVIGCQNALRMCLHPVIACTCGMVTATFGGLTRDVLCGLPKETQGNGRIMHSHGDLYASTAFAGAASYVFARSMALPLAVRIFSGVGISVGLRYAAATYELGLPSWDK 277          
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: A0A067C3S4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C3S4_SAPPC)

HSP 1 Score: 197 bits (501), Expect = 1.870e-58
Identity = 108/231 (46.75%), Postives = 145/231 (62.77%), Query Frame = 1
Query:    1 RYPDL-SPGGVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKPDGYVKGEVRKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGASL-AVRMGAVVTATTAVRWLLVNNGVKLPAWGED 687
            R+P L +P G LR  D+ GT VFA SGS+TA + G D+ G +I+G +TAVGGGT RDA++LNK+PFW+EEWEY+ +   AA      W  ++P   +      +  +  GGEG+AM+  D+  +G FAV+GAMNGIR     L+ A CGM T+TFGG+TRD L  RPVRILHS+ + YATVAFSSA  Y+ALR         R+ A +     +R     +G +LP W  +
Sbjct:  101 RWPGLRTPTGFLRSLDWFGTIVFATSGSLTAAMCGADLLGSIIIGTITAVGGGTLRDALVLNKQPFWVEEWEYLVMSALAATTAFYFWGDMRPGQEIVPGSGLTLKSADGGEGTAMEWGDAVGVGAFAVIGAMNGIRASSPMLVSALCGMMTSTFGGLTRDTLLGRPVRILHSYSDVYATVAFSSACLYLALRKAAPRYQGCRIFAAICLAVFLREQAWTHGWRLPFWAAN 331          
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: A0A1V9ZRR4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRR4_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.950e-56
Identity = 106/231 (45.89%), Postives = 146/231 (63.20%), Query Frame = 1
Query:    1 RYPDLSPG-GVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKPDGYVKGEVRKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGASL-AVRMGAVVTATTAVRWLLVNNGVKLPAWGED 687
            R+P L+   G+LR  D+ GT VFA SGS+TA + G D+ G +I+G +TAVGGGT RDA++LNK+PFW+EEWEY+ L   AA A    W  +KP   +      +  +  GGEG+ M+ +D+  +G FAV+GAMNGIR     L+ A CGM T+TFGG+TRD L  RPVRILHS+ + YATVA SSA  Y+++R +     A R+   +     +R     +G +LP W  +
Sbjct:   95 RWPGLTASTGLLRGLDWFGTLVFATSGSLTAAMCGADLLGSIIIGTITAVGGGTLRDALVLNKQPFWVEEWEYLVLSGVAATAAFYFWGDMKPGQELVPGSGLTLKSADGGEGTMMEWSDAVGVGTFAVIGAMNGIRANSPFLVSAICGMMTSTFGGLTRDTLLGRPVRILHSYNDVYATVALSSACLYLSMRKIAPQQQAARIFLSIALAVVLREQAWTHGWRLPFWATN 325          
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: A0A6A4Y628_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4Y628_9STRA)

HSP 1 Score: 190 bits (482), Expect = 3.170e-56
Identity = 108/228 (47.37%), Postives = 137/228 (60.09%), Query Frame = 1
Query:    1 RYPDL-SPGGVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKPDGYVKGEVRKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGAS-LAVRMGAVVTATTAVRWLLVNNGVKLPAW 678
            R+P L S  G LR  D+ GTAVFA SGS+TA   G D+ G  +VG +TAVGGGT RDA++L K PFW++EWEY+ L  AAA      W  + P     G    +  A  GGEG+ M   D+  +G FAV+GAMNGIR  C  L+ A CGM TATFGG+TRD L  RP RILH + + YA +AFS A  Y+A+R    S   +R+ A V     +R     +G +LP W
Sbjct:   51 RWPSLTSATGCLRSLDWFGTAVFAVSGSLTAATTGCDLLGCTLVGTITAVGGGTLRDALVLQKPPFWVDEWEYLVLSAAAAAGAFYFWGDVDPGRAFFGLDGLTLKAADGGEGTLMDWGDAVGVGAFAVIGAMNGIRAQCPLLVSALCGMMTATFGGLTRDTLLHRPGRILHPYADTYAPIAFSGAATYLAMRATAPSHQGLRIAACVGLAVGLRQQAWTHGWRLPHW 278          
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: A0A1V9ZTY0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTY0_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.000e-55
Identity = 108/232 (46.55%), Postives = 144/232 (62.07%), Query Frame = 1
Query:    1 RYPDL-SPGGVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKP-DGYVKGEVRKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGASL-AVRMGAVVTATTAVRWLLVNNGVKLPAWGED 687
            R+P + SP G LR  D+ GT VFAASGS+TA + G D+ G +IVG +TA+GGGT RDA++LNK+PFW+EEWEY+ +   AA      W  +KP    + G   KS     GGEG+AM+  D+  +G FAV+GAMNGIR     ++ A CGM T+TFGG+TRD L  RPVRILHS+ + YATVA SSA  Y+ L+         R+   +     +R     +G +LP W  +
Sbjct:   56 RWPGIRSPTGFLRSLDWFGTLVFAASGSLTAAMCGADLLGSIIVGTITAIGGGTLRDALVLNKQPFWIEEWEYLVMSAFAATLAFYFWGDMKPGQELLPGLTLKS---VDGGEGTAMEWGDAIGVGAFAVIGAMNGIRAQSPFVVSALCGMMTSTFGGLTRDTLLGRPVRILHSYSDVYATVALSSACLYLGLQKAAPKYQGTRIFLAIVLAIVLREQAWTHGWRLPFWAAN 284          
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: W4GLY3_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLY3_9STRA)

HSP 1 Score: 187 bits (474), Expect = 7.060e-55
Identity = 103/231 (44.59%), Postives = 139/231 (60.17%), Query Frame = 1
Query:    1 RYPDL-SPGGVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKPDGYVKGEVRKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGASL-AVRMGAVVTATTAVRWLLVNNGVKLPAWGED 687
            R+P L S  G LR  D+ G+ VFA SGS+TA  AG D+ G  ++G +TAVGGGT RDA++LNK+PFW+EEWEY+    AAA     +W  +     V      +  +  GGEG+ M   D+  +G FAV+GAMNGIR     L+ A CGM T+TFGGMTRD L  RPVRILH + + YA +AF+ A  Y+A+R V      +R+ + V     +R     +G +LP W  +
Sbjct:   67 RWPSLTSATGCLRTLDWFGSVVFAVSGSLTAATAGCDLLGCTLIGTITAVGGGTLRDALVLNKQPFWIEEWEYLVFSGAAAAGAFYLWGQIPAGDEVIEGTGLTLKSADGGEGTLMDWGDAVGVGAFAVIGAMNGIRAQSPLLVSALCGMMTSTFGGMTRDTLLNRPVRILHPYADTYAPIAFTGAAAYLAMRAVAPQYQGLRIASCVALAVGLRQQAWTDGWRLPHWDVE 297          
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: A0A7S0XJP0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XJP0_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.130e-53
Identity = 111/263 (42.21%), Postives = 144/263 (54.75%), Query Frame = 1
Query:    1 RYPDL-SPGGVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWP--------------------------------TLKPDGYVKGEVRKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGASLAVRMGAVVTATTAVRWLLVNNGVKLPAWGEDR 690
            RYP+L +PGG+LR ADYAGT  FA +G+ITA  +G+DV G +IVG++T+VGGGT RDAI LN++PFW EE EYI +G+   L T  VWP                                T       K + + + +         + T D+  L  FA++GA NGIR     L+ A CGMATATFGG+ RDV+  RPVRI+HS+ E YA  A + A  Y+A    G S AVR+GA        R+  V N VKL  W  D+
Sbjct:   90 RYPNLKTPGGMLRGADYAGTLTFALTGTITAAQSGLDVFGSVIVGIITSVGGGTIRDAIFLNRKPFWTEETEYIWMGIITGLVTFFVWPQSVLEWQRTKQQKELENQIERRQSKNRPASSQTTAEAKITKAKAKANLSKHYDTVDGILDTLDAIGLSAFAIIGAQNGIRASMPLLVSAICGMATATFGGLIRDVICGRPVRIVHSNAEVYAPPALAGATVYLASITAGGSPAVRIGAAFLVCMGTRFWAVVNNVKLHTWDIDQ 352          
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: R7Q7M5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7M5_CHOCR)

HSP 1 Score: 180 bits (457), Expect = 7.300e-53
Identity = 103/227 (45.37%), Postives = 129/227 (56.83%), Query Frame = 1
Query:    1 RYPDLSPGGVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKPDGYVKGEVRKSWAAQGGGEGSAMQ-TADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGASLAVRMGAVVTATTAVRWLLVNNGVKLPAW 678
            R+P LS  G LR  DY GT  FA +G++ A  +GMD  G  +VG +TAVGGGT RDA++LN RPFW EE EY+ L L A+  T  +WP  K D                   SA+    DSA +  FAV+GA NG+R G   ++   CGMATATFGG  RDVL  R VRILHSH E YAT A   A+ Y+ +R +GA +  R+G  +    A R      G +LP W
Sbjct:   51 RFPTLSTPGGLRALDYVGTLSFAHTGALLAATSGMDALGTCVVGTITAVGGGTIRDAVILNARPFWTEEPEYLYLCLLASGLTFAMWPREKEDN------------------SALHFVTDSAGVAAFAVIGAQNGVRAGVPAIVSVVCGMATATFGGAVRDVLCNRKVRILHSHAEVYATTAAMGAISYLGMRRMGAGVRARVGTGLVVAFAGRCFAWRYGTRLPVW 259          
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Match: A0A485K4X7_9STRA (Aste57867_1357 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4X7_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.620e-52
Identity = 104/228 (45.61%), Postives = 142/228 (62.28%), Query Frame = 1
Query:    1 RYPDLS-PGGVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVGGGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKPDGYVKGEVRKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMATATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGASL-AVRMGAVVTATTAVRWLLVNNGVKLPAW 678
            R+P +S P  +LR  D  GT++FAASGS+ A   G D+ G L+VG +TAVGGGT+RD I+L+K+PFW+ EWEY+AL +A A A  ++W  +     V G   K      G  G  +   D+  +GV AV+GAMNGIR  C   + A CGM TATFGG+TRDV+  RPVRIL+SH E YA +A + A  Y++L+ +     AVR+ A V    A+R     +G ++P W
Sbjct:   64 RWPGVSSPTHILRSLDLFGTSIFAASGSLAAATTGCDLIGCLVVGSMTAVGGGTWRDVIILHKQPFWVVEWEYLALSMAVAAAVFLLWGCIPLGQTVLGASLK---LANGDAGVLLDWGDAVGVGVCAVIGAMNGIRHHCPAFISALCGMITATFGGLTRDVVLNRPVRILYSHAEVYAVIALTGAAVYLSLQRLAPKQQAVRIFACVALVMALRQQAWTHGWRMPVW 288          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10570.780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WP54_9STRA3.910e-6248.25Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2R5GH45_9STRA5.920e-6147.66Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A067C3S4_SAPPC1.870e-5846.75Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZRR4_9STRA1.950e-5645.89Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6A4Y628_9STRA3.170e-5647.37Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A1V9ZTY0_9STRA1.000e-5546.55Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4GLY3_9STRA7.060e-5544.59Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A7S0XJP0_9STRA3.130e-5342.21Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
R7Q7M5_CHOCR7.300e-5345.37Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A485K4X7_9STRA1.620e-5245.61Aste57867_1357 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10570contigS-firma_F_contig10570:4131..5035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog112098.XP_008612248.1
PFAMsACT_6,UPF0126
Max annot lvl2759|Eukaryota
Evalue3.07e-59
EggNOG OGs2B6TB@1|root,2S0MY@2759|Eukaryota
DescriptionUPF0126 domain
COG categoryS
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised domain UPF0126
Ec32 orthologEc-05_004160.1
Exons5
Model size696
Cds size696
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10570.780.1prot_S-firma_F_contig10570.780.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10570 4131..5035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.4247386-CDS-S-firma_F_contig10570:4130..42981622815593.4247386-CDS-S-firma_F_contig10570:4130..4298Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4131..4298 -
1696949440.3806882-CDS-S-firma_F_contig10570:4130..42981696949440.3806882-CDS-S-firma_F_contig10570:4130..4298Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4131..4298 -
1622815593.4350612-CDS-S-firma_F_contig10570:4368..45931622815593.4350612-CDS-S-firma_F_contig10570:4368..4593Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4369..4593 -
1696949440.3948302-CDS-S-firma_F_contig10570:4368..45931696949440.3948302-CDS-S-firma_F_contig10570:4368..4593Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4369..4593 -
1622815593.449941-CDS-S-firma_F_contig10570:4627..47711622815593.449941-CDS-S-firma_F_contig10570:4627..4771Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4628..4771 -
1696949440.407683-CDS-S-firma_F_contig10570:4627..47711696949440.407683-CDS-S-firma_F_contig10570:4627..4771Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4628..4771 -
1622815593.463715-CDS-S-firma_F_contig10570:4825..49351622815593.463715-CDS-S-firma_F_contig10570:4825..4935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4826..4935 -
1696949440.4182837-CDS-S-firma_F_contig10570:4825..49351696949440.4182837-CDS-S-firma_F_contig10570:4825..4935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4826..4935 -
1622815593.478223-CDS-S-firma_F_contig10570:4986..50351622815593.478223-CDS-S-firma_F_contig10570:4986..5035Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4987..5035 -
1696949440.4284754-CDS-S-firma_F_contig10570:4986..50351696949440.4284754-CDS-S-firma_F_contig10570:4986..5035Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10570 4987..5035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10570.780.1

>prot_S-firma_F_contig10570.780.1 ID=prot_S-firma_F_contig10570.780.1|Name=mRNA_S-firma_F_contig10570.780.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=232bp
RYPDLSPGGVLRLADYAGTAVFAASGSITAGVAGMDVCGQLIVGVVTAVG
GGTFRDAIMLNKRPFWMEEWEYIALGLAAALATSMVWPTLKPDGYVKGEV
RKSWAAQGGGEGSAMQTADSAALGVFAVVGAMNGIRGGCHPLLVATCGMA
TATFGGMTRDVLTRRPVRILHSHEEPYATVAFSSALGYMALRGVGASLAV
RMGAVVTATTAVRWLLVNNGVKLPAWGEDRA*
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mRNA from alignment at S-firma_F_contig10570:4131..5035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10570.780.1 ID=mRNA_S-firma_F_contig10570.780.1|Name=mRNA_S-firma_F_contig10570.780.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=905bp|location=Sequence derived from alignment at S-firma_F_contig10570:4131..5035- (Sphaerotrichia firma ET2_F female)
AGGTACCCAGACCTGTCTCCAGGTGGCGTGCTCCGGCTTGCGGACTATGG TGAGGTGGCAGCGAAGCGTGACAGGTTTGCCTGTAACAACCTCTCCGCAG CGGGGACGGCGGTGTTTGCGGCGTCGGGCAGCATTACAGCAGGCGTGGCG GGCATGGACGTGTGTGGGCAGCTAATTGTTGGCGTGGTGACGGCTGTTGG TGGTGGCACGGTGCGTGGGGGGGTGGAGGACAGTACCCTGGAACTCACGC CCAAGCTGCCCCAGTTTCGGGATGCCATCATGCTGAACAAGCGGCCGTTT TGGATGGAGGAGTGGGAGTACATCGCGCTGGGTCTGGCTGCAGCGCTGGC GACGTCCATGGTGTGGCCAACCCTGAAGCCCGACGGGTATGTCAAGGGAG AGGTGAGGGTGCTGGGTGAATGTGTGTGTGTGATGGGTGAAGAAGTCATG GGCGGCACAGGGTGGCGGCGAAGGGAGTGCCATGCAAACGGCGGACTCGG CGGCGCTTGGCGTGTTCGCAGTTGTGGGGGCCATGAATGGCATTCGCGGG GGCTGCCACCCGCTCCTGGTGGCGACGTGTGGCATGGCAACGGCGACGTT TGGCGGCATGACCCGCGACGTGCTGACAAGGCGCCCGGTCCGGATTCTGC ACAGCCATGAAGAGCCAGTGGGTTTGGGGGGTGGTCATGTCATGCGTGTT TCCGTGTGTGACCCCACGGGGTACTGTTTGCATGCAGTACGCGACAGTGG CGTTCTCATCGGCGCTTGGGTACATGGCTCTTCGCGGGGTGGGCGCGTCG CTGGCTGTGCGGATGGGTGCTGTTGTGACCGCCACGACGGCCGTGCGGTG GCTCCTTGTCAACAACGGCGTCAAGCTGCCAGCGTGGGGAGAGGACAGGG CGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10570:4131..5035-

>mRNA_S-firma_F_contig10570.780.1 ID=mRNA_S-firma_F_contig10570.780.1|Name=mRNA_S-firma_F_contig10570.780.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1392bp|location=Sequence derived from alignment at S-firma_F_contig10570:4131..5035- (Sphaerotrichia firma ET2_F female)
AGGTACCCAGACCTGTCTCCAGGTGGCGTGCTCCGGCTTGCGGACTATGA
GGTACCCAGACCTGTCTCCAGGTGGCGTGCTCCGGCTTGCGGACTATGCG
GGGACGGCGGTGTTTGCGGCGTCGGGCAGCATTACAGCAGGCGTGGCGGG
CATGGACGTGTGTGGGCAGCTAATTGTTGGCGTGGTGACGGCTGTTGGTG
GTGGCACGCGGGGACGGCGGTGTTTGCGGCGTCGGGCAGCATTACAGCAG
GCGTGGCGGGCATGGACGTGTGTGGGCAGCTAATTGTTGGCGTGGTGACG
GCTGTTGGTGGTGGCACGTTTCGGGATGCCATCATGCTGAACAAGCGGCC
GTTTTGGATGGAGGAGTGGGAGTACATCGCGCTGGGTCTGGCTGCAGCGC
TGGCGACGTCCATGGTGTGGCCAACCCTGAAGCCCGACGGGTATGTCAAG
GGAGAGGTGAGGTTTCGGGATGCCATCATGCTGAACAAGCGGCCGTTTTG
GATGGAGGAGTGGGAGTACATCGCGCTGGGTCTGGCTGCAGCGCTGGCGA
CGTCCATGGTGTGGCCAACCCTGAAGCCCGACGGGTATGTCAAGGGAGAG
GTGAGGAAGTCATGGGCGGCACAGGGTGGCGGCGAAGGGAGTGCCATGCA
AACGGCGGACTCGGCGGCGCTTGGCGTGTTCGCAGTTGTGGGGGCCATGA
ATGGCATTCGCGGGGGCTGCCACCCGCTCCTGGTGGCGACGTGTGGCATG
GCAACGGCGACGTTTGGCGGCATGACCCGCGACGTGCTGACAAGGCGCCC
GGTCCGGATTCTGCACAGCCATGAAGAGCCAAAGTCATGGGCGGCACAGG
GTGGCGGCGAAGGGAGTGCCATGCAAACGGCGGACTCGGCGGCGCTTGGC
GTGTTCGCAGTTGTGGGGGCCATGAATGGCATTCGCGGGGGCTGCCACCC
GCTCCTGGTGGCGACGTGTGGCATGGCAACGGCGACGTTTGGCGGCATGA
CCCGCGACGTGCTGACAAGGCGCCCGGTCCGGATTCTGCACAGCCATGAA
GAGCCATACGCGACAGTGGCGTTCTCATCGGCGCTTGGGTACATGGCTCT
TCGCGGGGTGGGCGCGTCGCTGGCTGTGCGGATGGGTGCTGTTGTGACCG
CCACGACGGCCGTGCGGTGGCTCCTTGTCAACAACGGCGTCAAGCTGCCA
GCGTGGGGAGAGGACAGGGCGTAGTACGCGACAGTGGCGTTCTCATCGGC
GCTTGGGTACATGGCTCTTCGCGGGGTGGGCGCGTCGCTGGCTGTGCGGA
TGGGTGCTGTTGTGACCGCCACGACGGCCGTGCGGTGGCTCCTTGTCAAC
AACGGCGTCAAGCTGCCAGCGTGGGGAGAGGACAGGGCGTAG
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