mRNA_S-firma_F_contig10569.777.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10569.777.1
Unique NamemRNA_S-firma_F_contig10569.777.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: D8LS38_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS38_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 4.080e-47
Identity = 107/154 (69.48%), Postives = 114/154 (74.03%), Query Frame = 2 
Query:  758 EVEKVVLFFLSKQGELAQQLLDARQT-PAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLISLARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLRKCVRCSFG 1216
            +VEKVVLFFLSKQGELAQ LLDARQ  P+       G+    FFIGNG G  A   G        +ARETDRH IYC IG QIAELMRFLQLNVSGLRKILKKHDKQVRDK+IAKNYLSTRA EKYS+MRQLYNN+GVMALV SLR       G
Sbjct:    5 QVEKVVLFFLSKQGELAQLLLDARQLRPSQKGGNSAGNSGNAFFIGNGAGGDAATGGI-------IARETDRHAIYCSIGTQIAELMRFLQLNVSGLRKILKKHDKQVRDKLIAKNYLSTRANEKYSSMRQLYNNAGVMALVASLRNAFEVDEG 151
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: A0A6H5JD70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD70_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 8.790e-33
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 2 
Query:  950 LARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLRKCVRCSFG 1216
            +ARETDRH IYC IGRQIAELMRFLQLNVSGLRKILKKHDKQVRDK+IAKNYLSTRA+EKYS+MRQLYNN+GVMALV SLR       G
Sbjct:    2 IARETDRHAIYCSIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKLIAKNYLSTRAKEKYSSMRQLYNNAGVMALVASLRNAFEVEEG 90
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: A0A835YJ60_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ60_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.170e-22
Identity = 72/187 (38.50%), Postives = 112/187 (59.89%), Query Frame = 2 
Query:  650 GGAARSLRRRLTSSYSLA---VGEDVDEVEEKFKASLDAEVEKVVLFFLSKQGELAQQLLDARQTPAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLISLARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLRKCV 1201
            GG+ R     +  S S A   V  +++  E+ F   +D EVEKVVLFFL +QG LA ++L  R+     +   + +++    +     E   +     + L  L +E         IG+ + +L+ FLQLNV+GLRKILKKHDKQ+RD+++A NYL +RA+ +YS ++QLY+N G+MALVG+L++ +
Sbjct:   49 GGSRRPSLTAMIRSNSFASRPVSSNMNNKEDDFSRKVDDEVEKVVLFFLQEQGSLATRMLAVREKLPVQAPINSNAMMNMADL-----EVNSSRALNSEELDQLHKE------ITAIGQDMVKLLEFLQLNVTGLRKILKKHDKQIRDRLLAANYLCSRARVRYSFLQQLYHNEGIMALVGTLKRAL 224
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: A0A1V9YFP9_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFP9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.900e-17
Identity = 55/161 (34.16%), Postives = 87/161 (54.04%), Query Frame = 2 
Query:  722 EVEEKFKASLDAEVEKVVLFFLSKQGELAQQLLDARQTPAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLISLARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLRKCVR 1204
            E++++F+  LDAE+EK+VLFFL+KQGE AQ+L   RQT    +       ++G   G                             Y  IG ++  L+ +++LN +GLRKILKKHDK  +   I  NY+STR     S ++QLY++ G+ A++ ++R  ++
Sbjct:  101 ELQQEFEKKLDAEIEKIVLFFLTKQGEFAQRLASFRQTQQTLASASEAQTIQGLADG-----------------------------YRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGISAIIATIRVALK 232
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: A0A067BPB1_SAPPC (SPX domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BPB1_SAPPC)

HSP 1 Score: 90.1 bits (222), Expect = 9.760e-17
Identity = 53/157 (33.76%), Postives = 80/157 (50.96%), Query Frame = 2 
Query:  734 KFKASLDAEVEKVVLFFLSKQGELAQQLLDARQTPAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLISLARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLRKCVR 1204
            KF+  LDAE+EK+VLFFL+KQGE AQ+L   RQ      +      +     G                             Y  IG ++  L+ +++LN +GLRKILKKHDK  +   I  NY+STR     S ++QLY++ G+ A++ ++R  ++
Sbjct:   48 KFEKKLDAEIEKIVLFFLTKQGEFAQRLATYRQAQQSLQYASEAQTIASLADG-----------------------------YRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGISAIIATIRVALK 175
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: A0A067CJA4_SAPPC (SPX domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CJA4_SAPPC)

HSP 1 Score: 91.3 bits (225), Expect = 8.760e-16
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2 
Query:  722 EVEEKFKASLDAEVEKVVLFFLSKQGELAQQLLDARQTPAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLISLARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLRKCVR 1204
            E++++F+  LDAE+EK+VLFFL+KQGE AQ+L   RQ      +      +     G                             Y  IG ++  L+ +++LN +GLRKILKKHDK  +   I  NY+STR     S ++QLY++ G+ A++ ++R  ++
Sbjct:   64 ELQQEFEKKLDAEIEKIVLFFLTKQGEFAQRLATYRQAQQSLQYASEAQTIASLADG-----------------------------YRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGISAIIATIRVALK 195
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: A0A1V9ZAE3_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZAE3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.490e-15
Identity = 53/160 (33.12%), Postives = 88/160 (55.00%), Query Frame = 2 
Query:  725 VEEKFKASLDAEVEKVVLFFLSKQGELAQQLLDARQTPAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLISLARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLRKCVR 1204
            ++++F+  LDAE+EK+VLFFL+KQGE AQ+L   R+T     +      ++   +G+G                           Y  IG ++  L+ +++LN +GLRKILKKHDK  +   I  NY+STR     S ++QLY++ G+ A++ ++R  ++
Sbjct:   94 LQQEFEKKLDAEIEKIVLFFLTKQGEFAQRLKQCRETQKSLVYNSEVETIQ--TLGDG---------------------------YRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGISAIIATIRAALK 224
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: T0PWY1_SAPDV (SPX domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PWY1_SAPDV)

HSP 1 Score: 90.5 bits (223), Expect = 2.530e-15
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2 
Query:  722 EVEEKFKASLDAEVEKVVLFFLSKQGELAQQLLDARQTPAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLISLARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLRKCVR 1204
            E++++F+  LDAE+EK+VLFFL+KQGE AQ+L   RQ      +      +     G                             Y  IG ++  L+ +++LN +GLRKILKKHDK  +   I  NY+STR     S ++QLY++ G+ A++ ++R  ++
Sbjct:   64 ELQQEFEKKLDAEIEKIVLFFLAKQGEFAQRLATYRQAQQSLQYASEAQTITTLADG-----------------------------YRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGISAIIATIRVALK 195
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: A0A3L6VEA9_9STRA (SPX domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VEA9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.630e-15
Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 2 
Query:  734 KFKASLDAEVEKVVLFFLSKQGELAQQL--LDARQTPAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLISLARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLR 1192
            +F+  LD+E+EK+VLFFL+KQGE A +L    A+Q  A      T S +E                     + +LA        Y  IG ++ +L+ +++LN +GLRKILKKHDK  + K I  NY+++R +   S ++QLY++ G+ A++ S+R
Sbjct:  129 RFQKKLDSEIEKIVLFFLTKQGEFASRLSAFRAQQQVATTPSPSTESEIET--------------------INALANG------YRDIGEELVKLLYYVELNATGLRKILKKHDKNHKGKKITANYINSRVESNVSHLQQLYHDEGISAIIASIR 257
[Close]
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Match: W4FEE6_9STRA (SPX domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FEE6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.000e-15
Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 2 
Query:  734 KFKASLDAEVEKVVLFFLSKQGELAQQL--LDARQTPAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLISLARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAKNYLSTRAQEKYSAMRQLYNNSGVMALVGSLR 1192
            +F+  LD+E+EK+VLFFL+KQGE A +L    A+Q  A  S   T S +E                     + +LA        Y  IG ++ +L+ +++LN +GLRKILKKHDK  + K I  NY+++R +   S ++QLY++ G+ A++ S+R
Sbjct:   60 RFQKKLDSEIEKIVLFFLTKQGEFASRLSAFRAQQLVATTSSPSTESEIET--------------------INALANG------YRDIGEELVKLLYYVELNATGLRKILKKHDKNHKGKKITANYINSRVESNVSHLQQLYHDEGISAIIASIR 188
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10569.777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS38_ECTSI4.080e-4769.48SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JD70_9PHAE8.790e-3383.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJ60_9STRA5.170e-2238.50Major facilitator superfamily domain-containing pr... [more]
A0A1V9YFP9_9STRA3.900e-1734.16Major Facilitator Superfamily (MFS) n=1 Tax=Achlya... [more]
A0A067BPB1_SAPPC9.760e-1733.76SPX domain-containing protein (Fragment) n=1 Tax=S... [more]
A0A067CJA4_SAPPC8.760e-1632.92SPX domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A1V9ZAE3_9STRA1.490e-1533.13Major Facilitator Superfamily (MFS) n=1 Tax=Thraus... [more]
T0PWY1_SAPDV2.530e-1532.92SPX domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A3L6VEA9_9STRA3.630e-1535.48SPX domain-containing protein (Fragment) n=1 Tax=A... [more]
W4FEE6_9STRA4.000e-1536.13SPX domain-containing protein n=1 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10569contigS-firma_F_contig10569:2..4367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LS38
PFAMsMFS_1,SPX
Max annot lvl2759|Eukaryota
GOsGO:0000325,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0009705,GO:0015698,GO:0016020,GO:0031090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0098588,GO:0098805
Evalue1.36e-51
EggNOG OGsCOG5036@1|root,KOG2325@1|root,KOG1161@2759|Eukaryota,KOG2325@2759|Eukaryota
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-12_004930.1
Descriptionmajor facilitator superfamily
COG categoryO
Hectar predicted targeting categoryother localisation
Exons4
Model size1688
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10569.777.1prot_S-firma_F_contig10569.777.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10569 2093..3901 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.7789469-UTR-S-firma_F_contig10569:1..4131622815592.7789469-UTR-S-firma_F_contig10569:1..413Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10569 2..413 +
1696949439.8676417-UTR-S-firma_F_contig10569:1..4131696949439.8676417-UTR-S-firma_F_contig10569:1..413Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10569 2..413 +
1622815592.7883346-UTR-S-firma_F_contig10569:2005..20921622815592.7883346-UTR-S-firma_F_contig10569:2005..2092Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10569 2006..2092 +
1696949439.8882864-UTR-S-firma_F_contig10569:2005..20921696949439.8882864-UTR-S-firma_F_contig10569:2005..2092Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10569 2006..2092 +
1622815592.844346-UTR-S-firma_F_contig10569:3901..43671622815592.844346-UTR-S-firma_F_contig10569:3901..4367Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10569 3902..4367 +
1696949439.9483278-UTR-S-firma_F_contig10569:3901..43671696949439.9483278-UTR-S-firma_F_contig10569:3901..4367Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10569 3902..4367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.8031228-CDS-S-firma_F_contig10569:2092..23531622815592.8031228-CDS-S-firma_F_contig10569:2092..2353Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10569 2093..2353 +
1696949439.9068494-CDS-S-firma_F_contig10569:2092..23531696949439.9068494-CDS-S-firma_F_contig10569:2092..2353Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10569 2093..2353 +
1622815592.818161-CDS-S-firma_F_contig10569:2965..32391622815592.818161-CDS-S-firma_F_contig10569:2965..3239Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10569 2966..3239 +
1696949439.9180946-CDS-S-firma_F_contig10569:2965..32391696949439.9180946-CDS-S-firma_F_contig10569:2965..3239Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10569 2966..3239 +
1622815592.8319993-CDS-S-firma_F_contig10569:3713..39011622815592.8319993-CDS-S-firma_F_contig10569:3713..3901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10569 3714..3901 +
1696949439.928973-CDS-S-firma_F_contig10569:3713..39011696949439.928973-CDS-S-firma_F_contig10569:3713..3901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10569 3714..3901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10569.777.1

>prot_S-firma_F_contig10569.777.1 ID=prot_S-firma_F_contig10569.777.1|Name=mRNA_S-firma_F_contig10569.777.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=241bp
MSWEASPLQSAGAAVTGAGAGRGCGGGGASGGVSVSSAGIGSAASSSSLA
GGAARSLRRRLTSSYSLAVGEDVDEVEEKFKASLDAEVEKVVLFFLSKQG
ELAQQLLDARQTPAPPSHQGTGSVVEGFFIGNGGGESAGAAGAGDDGLIS
LARETDRHGIYCGIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKMIAK
NYLSTRAQEKYSAMRQLYNNSGVMALVGSLRKCVRCSFGF*
back to top

mRNA from alignment at S-firma_F_contig10569:2..4367+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10569.777.1 ID=mRNA_S-firma_F_contig10569.777.1|Name=mRNA_S-firma_F_contig10569.777.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4366bp|location=Sequence derived from alignment at S-firma_F_contig10569:2..4367+ (Sphaerotrichia firma ET2_F female)
GAGGTACTAGATAGAGAGACCGGGATGGTTTTTAATGTGAAGACAACAAC
AACAACAACAACAGCAACAACAACCCCCGTCAAACCCCCCTTCAGCGTTG
TCCATGTACCACTCCATAATCGAATCCATATCGCCTTGAAGGATGTGGTT
CTCATGCTTTTCAAGTCTGCGCAACTTTGCTTCCCTTTCAGCCTCGTCTG
CCTCTGCTTGCATGATGGCATCCAAGCGCTCGTCACGTTGTTGTTCCGTC
ATGCCGTTCAATTCAGCCCGCAACTCCGCCCTCTCACGCACAGCTTGCTC
ATTAGCCTCGTAGGCTTGGAGCTCTCCCACCGACGCCTGTCCTAAGCCTA
AGCTGAGCGTGTGTCTCGCCCGCTGATGTGCGATTCGCTGTCGCTGCTGC
TGGCTGTTTGAGGTGTGGCGCTGTGGCTTTTTTTTTTTTTTTTTCCCGTG
TGAAGAGACGATTTCCGCCGCGTTTGTTTTCCCGTGTGGTCCGCCTCCAC
AGCAGGTCCGCCGCGTTTGTTTTCCCGTGTGGTCCGCCTCTACAGCAGTC
TAAAATCAAGTGATCCCACTCTAAAATCAAGTTTAAGCGAACATACTCAC
ATACTCACATACTCACAGACATTTCTTCCATCGAGGCCGCCTATATTCGT
GATCGGTTGGTCTGGATTAGAAACTCGCTTCGCTCGAATTAGAGAGACGT
TGACCTGCTGTATCGTTTCCTGTTTAGTCTATTTCCAGTCCACTGGTAAG
GTGCAGTTGGGGAGAGAGTTGGGAGTGGTGGGTGGAGGTAAGAGGTGGGA
GCCGCGCGGGTTTAACCTCTATAGTGTGGCTGGTGCTCTCACGGCATCTG
CAGGCCAGGCACGCGAAAACCGCACAACCGAGCCAGATTAAAAAAGAGTC
TACATGTTGAGGCATAGACTATATCACCACCGCCGAGCCCCGCACACAGC
ACCGTATGCGCCAGACAGACCAGCCTCCTCCCCCTTTCAAATGAGGACGC
GCCCACAGATGCAGAAAAAGCCCCCATGGGCGGCAAGGGCGTCTGAGATT
AGCTGCTCCGCTGTGCTCTGCTGCTGCTGCGCTGCTTGCGTTTGTATCAT
TCATATGACGCGCAGCTCGCTTCTTCGCTGGATTTCATCTGCTTGTACTT
GCATATATACGAAGTACAAGATTCCCTTCCAGGCGTGGTTTATGTCGAAC
GGGGTGAAGCAAGAGAACAAAAAAAGCGTCTGAAACCGGTGCAACATGAA
GTAGACAGTACGCGAGCGCAGATAACGCAATTATATGCTCCAGGGTTGTA
GGAGACATCCTGTCGGAGTTCGAAGGTGTCTCCGACCCAACAGTGCGGCA
CCTTTCGTTTCATAAGACACGTATTGGTCCTTTGGGAAATTCATAATGAA
CATCTTGCTTTTGTAAAAGCTTAGTGAAGGCCGCGAGGTTTGTCTCCTTG
TAAGGGAGGTGAGGTGTTGAAACAATCTCTGTGGTCAGGGGCACGGACTG
CCCCTGCCCCCCCGCAGAGTAAAGAGCCATAGCGAGCTACGGGGTTGTAT
CCACAATCCCTCGTTCACTTCTTCCTTCTCGTCCTACGTTTGATCAAGAA
TATCCAAGAGCTTTTAACTACGAGTGACCTGGGTGAGCGATACCGTCCGT
GAGCCGAACCTTCCCTTAACCAACTCTCCTTCACACTTGTGCCTGTTGGT
GACAGCTGCCGCAACCAAAGCACGCACGCTTGTCGAAGTTTGACAGGACA
CGACACCGGTGACCTGTTTACACTTGCAGTGTTTTTTTTACGGCAGCAGC
GACGAGTTGGCCGCCCAGCCACCACCTCGTGCCGGAGCGGACGAACGAAC
GAACGCTCTCTTAGCTCTTTCTTCGCTCATTTGTTCCTCGTCCGTCGTTC
CTCGCCTCGTTTCGCCTCGTTGTCTGGCCTGCTCCCCCTCCCCCCCCCCC
CCCTCCTTCGGCCGTTGGGGCATGGCACGGCATGGGGCAACCAACGCATC
GCAGGGGCTCAAGAAGCAGCTCAAGCGGCTCAAGGCCGCGTACGAGGCCG
CCAGCACGATCCAGAAGATCAACCAGGAGCACCAGCGCACCATGAGCTGG
GAGGCATCGCCTCTCCAATCTGCTGGCGCGGCGGTAACGGGGGCGGGGGC
GGGCAGGGGCTGCGGCGGCGGCGGCGCCAGCGGCGGCGTCAGCGTTTCCT
CCGCTGGCATTGGCTCCGCGGCCAGCTCGTCGTCGTTGGCCGGCGGGGCG
GCGCGGTCGCTGAGGAGGAGGCTGACGAGCAGCTACTCGCTGGCGGTCGG
GGAGGATGTGGACGAGGTGGAGGAGAAGTTCAAGGCGTCGCTCGATGCGG
AGGTTGGTTCTATTTTTGTCTGCACTGATACTGCTGTGTGCTTTGTGCGT
GCATACTGCATGTGTGATGCATACATACATACATACATACGTGCGTCTGT
CTTCTTCTTGGGGTGGGTATGTATATACGCGAGGGCCTTTTTTTCTGTGT
GGTGGCGGATGTCTAGGAGACGTCGTCGGTCGGTGTTGTTGATGATCTTG
GGTGTTGCCGCTGTTGTCGTCGCTGTTGCTATTTTACATTCGGCGTGCCA
CGTGGTGAAGGTCTGGGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AACGAAGGCGGCGGGCAAGGGTAGCGTAGGTTGTTTGTGAGGCCTTTCTC
CTTCCTGGATCCGGTTCCGTCCACCCTTGCTCTCTGGTTCGCTGTGCACA
CATGCATACGAAACAGTTTTTTGCTCGTTGATTCGAGATGTCAAGCCATG
ATCGATGCTTCGTGTATTGGCCTTGGCGTGTTCGATTGACACGGCTGACT
TTAACCTCTCTTGTTTTTTTAACTTTGCTTGTATTGGTCTTGGACGTGCT
CAACACACATGAACAATTCTAACGGTTTTGGCCTTCGAACCAAACGATTT
TTGTGACACAACAGGTGGAAAAGGTAGTCCTCTTCTTCTTGTCCAAGCAG
GGCGAGCTGGCGCAGCAGCTGCTCGATGCCAGACAAACACCGGCACCACC
GAGCCACCAAGGCACCGGCAGCGTAGTTGAAGGATTTTTCATCGGGAACG
GAGGCGGGGAATCGGCTGGGGCGGCGGGGGCGGGGGATGATGGGTTGATT
TCGCTTGCCCGGGAAACAGACAGACACGGGATCTACTGCGGCATCGGGAG
ACAGATCGCGGAGCTCATGCGGTTCCTTCAGCTGAACGGTGGGTCGGTGC
AGGACGTCGCAGCTCCGCTACAAGTTGCAGGAATTTGTTGTTGATGTTGA
TATTGAACTTTGGTACAGCAGCATCCATACCGCGTTGCACGTACACTGCT
GTAGTCTACCAGGTACGTGTCTAATTTATTGCATCGTCCGACAACGGGAA
GAAGAGCGCTGGTCGTTTCTGGCCGGGTTGCATGGGGTTAGCGCCCTTGG
GTTGGTTCACCAGCAACAACGACGTGGACGGACACTGTCGCGTAAAGTTT
TGGTGTAAACCCGTCTTTGATGACCAGGAGCAGCGTCGTTGGTGTGGTGT
GCCCCGCCTCTTTCCGTGTCTCGAGAGGGCATTCATTCCGCGGACAATAG
GCAACATAACTGAGCTGTAGATAAAAGACTAGGCACCAGCAGCCAACGCG
CGCGACCCCCCCGTCCCGTATCTTGTGCGCGTTTGTTTCCGGGAACAACA
ATTAATTGACAGTCTCCGGGTTGCGGAAGATTCTGAAGAAGCACGACAAG
CAGGTGAGGGACAAGATGATCGCCAAGAATTACCTCAGCACCCGGGCGCA
AGAGAAGTACTCGGCGATGCGGCAGCTGTACAACAACTCCGGAGTCATGG
CGCTGGTCGGGAGCCTTCGCAAGTGCGTTCGTTGTTCCTTTGGGTTTTGA
GGCCGTCTACAAGAGCTGTTTTGTTTTCGTTTCCTTTTTCGCGTTTTTAG
TTGTTTTGTTTTCGTTTTTGTTTCGCGCTCTCCCGCCCGCCCCCCTCTCC
AAATATCCCACCCTCCGGTTCACATCGCACGATCTGGCGTTTTCATCCAA
TTTGTTGCAGCATGAAATTTCCCAGACCCAGATCTATGGATGGATGCCAG
ACAAGAGGTATCGGATGCTACTGCTTATGCTTTTTTAAAGATTTTTTTTA
TGGTAACAAAAGCGCTTTAAAAAAGCATGATTTGCTAAATGAAATACGGC
AACTGAGTAATGCTATCCACTTATGGTAATTTATAAAACACGTAGATTTG
ATCTGAAACGAAGAGGAAACGTCGAACGACACGATTGCTGTATTCTCCAG
ATACAAACATGTTGAATTTTGTAGTTGGTGACAAACATGTGAGCCGCGAA
AGTGGCCATCCAGGAC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10569:2..4367+

>mRNA_S-firma_F_contig10569.777.1 ID=mRNA_S-firma_F_contig10569.777.1|Name=mRNA_S-firma_F_contig10569.777.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1446bp|location=Sequence derived from alignment at S-firma_F_contig10569:2..4367+ (Sphaerotrichia firma ET2_F female)
ATGAGCTGGGAGGCATCGCCTCTCCAATCTGCTGGCGCGGCGGTAACGGG
GGCGGGGGCGGGCAGGGGCTGCGGCGGCGGCGGCGCCAGCGGCGGCGTCA
GCGTTTCCTCCGCTGGCATTGGCTCCGCGGCCAGCTCGTCGTCGTTGGCC
GGCGGGGCGGCGCGGTCGCTGAGGAGGAGGCTGACGAGCAGCTACTCGCT
GGCGGTCGGGGAGGATGTGGACGAGGTGGAGGAGAAGTTCAAGGCGTCGC
TCGATGCGGAGATGAGCTGGGAGGCATCGCCTCTCCAATCTGCTGGCGCG
GCGGTAACGGGGGCGGGGGCGGGCAGGGGCTGCGGCGGCGGCGGCGCCAG
CGGCGGCGTCAGCGTTTCCTCCGCTGGCATTGGCTCCGCGGCCAGCTCGT
CGTCGTTGGCCGGCGGGGCGGCGCGGTCGCTGAGGAGGAGGCTGACGAGC
AGCTACTCGCTGGCGGTCGGGGAGGATGTGGACGAGGTGGAGGAGAAGTT
CAAGGCGTCGCTCGATGCGGAGGTGGAAAAGGTAGTCCTCTTCTTCTTGT
CCAAGCAGGGCGAGCTGGCGCAGCAGCTGCTCGATGCCAGACAAACACCG
GCACCACCGAGCCACCAAGGCACCGGCAGCGTAGTTGAAGGATTTTTCAT
CGGGAACGGAGGCGGGGAATCGGCTGGGGCGGCGGGGGCGGGGGATGATG
GGTTGATTTCGCTTGCCCGGGAAACAGACAGACACGGGATCTACTGCGGC
ATCGGGAGACAGATCGCGGAGCTCATGCGGTTCCTTCAGCTGAACGGTGG
AAAAGGTAGTCCTCTTCTTCTTGTCCAAGCAGGGCGAGCTGGCGCAGCAG
CTGCTCGATGCCAGACAAACACCGGCACCACCGAGCCACCAAGGCACCGG
CAGCGTAGTTGAAGGATTTTTCATCGGGAACGGAGGCGGGGAATCGGCTG
GGGCGGCGGGGGCGGGGGATGATGGGTTGATTTCGCTTGCCCGGGAAACA
GACAGACACGGGATCTACTGCGGCATCGGGAGACAGATCGCGGAGCTCAT
GCGGTTCCTTCAGCTGAACGTCTCCGGGTTGCGGAAGATTCTGAAGAAGC
ACGACAAGCAGGTGAGGGACAAGATGATCGCCAAGAATTACCTCAGCACC
CGGGCGCAAGAGAAGTACTCGGCGATGCGGCAGCTGTACAACAACTCCGG
AGTCATGGCGCTGGTCGGGAGCCTTCGCAAGTGCGTTCGTTGTTCCTTTG
GGTTTTGATCTCCGGGTTGCGGAAGATTCTGAAGAAGCACGACAAGCAGG
TGAGGGACAAGATGATCGCCAAGAATTACCTCAGCACCCGGGCGCAAGAG
AAGTACTCGGCGATGCGGCAGCTGTACAACAACTCCGGAGTCATGGCGCT
GGTCGGGAGCCTTCGCAAGTGCGTTCGTTGTTCCTTTGGGTTTTGA
back to top