mRNA_S-firma_F_contig1056.772.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1056.772.1
Unique NamemRNA_S-firma_F_contig1056.772.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1056.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1056contigS-firma_F_contig1056:10497..12342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size896
Cds size714
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1056.772.1prot_S-firma_F_contig1056.772.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1056 10497..12162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.054261-CDS-S-firma_F_contig1056:10496..108471622815592.054261-CDS-S-firma_F_contig1056:10496..10847Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1056 10497..10847 -
1696949439.3669481-CDS-S-firma_F_contig1056:10496..108471696949439.3669481-CDS-S-firma_F_contig1056:10496..10847Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1056 10497..10847 -
1622815592.071165-CDS-S-firma_F_contig1056:11042..112851622815592.071165-CDS-S-firma_F_contig1056:11042..11285Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1056 11043..11285 -
1696949439.375409-CDS-S-firma_F_contig1056:11042..112851696949439.375409-CDS-S-firma_F_contig1056:11042..11285Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1056 11043..11285 -
1622815592.086373-CDS-S-firma_F_contig1056:12042..121621622815592.086373-CDS-S-firma_F_contig1056:12042..12162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1056 12043..12162 -
1696949439.3833208-CDS-S-firma_F_contig1056:12042..121621696949439.3833208-CDS-S-firma_F_contig1056:12042..12162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1056 12043..12162 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.0978432-UTR-S-firma_F_contig1056:12162..123421622815592.0978432-UTR-S-firma_F_contig1056:12162..12342Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1056 12163..12342 -
1696949439.3913212-UTR-S-firma_F_contig1056:12162..123421696949439.3913212-UTR-S-firma_F_contig1056:12162..12342Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1056 12163..12342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1056.772.1

>prot_S-firma_F_contig1056.772.1 ID=prot_S-firma_F_contig1056.772.1|Name=mRNA_S-firma_F_contig1056.772.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=238bp
MAGHQHLRAPTLVVDQLPHPEQGTAQRGSLNPTSFEHGLAESRANNTRLA
HSTLVPQADASTRTAEASVEDKSIVDGGDGEVASIRHAFRETIGTDGTVR
SGVNQKCLTFEGAGVKASTDKGSTSRHQPQATHSYRATAAHRICDDDISP
GSNGIPLGAQQPFLTPIPDDRLPAETCETVTDQPSSDDEEGKTTSRSLTI
EASATQTKPGYSGNAVTNQHMDKSLVDPGGAAVATAAA
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mRNA from alignment at S-firma_F_contig1056:10497..12342-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1056.772.1 ID=mRNA_S-firma_F_contig1056.772.1|Name=mRNA_S-firma_F_contig1056.772.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1846bp|location=Sequence derived from alignment at S-firma_F_contig1056:10497..12342- (Sphaerotrichia firma ET2_F female)
CACAGCATGGAGAGCACACTCGTCGCCATCTAAGCGAGATTCGTTGCGGG
ACCTGCACACTGTGCTTGTCTCTCGAGCGAAACCGGCGCCTCCAGACGGA
GAAGAGGAGACAAGGCGGTACATTCCAACCGCCACGGGCGCTCAACAAAA
CTCTTGTCCGTCTGCATTGCTGTGGAAAACATGGCGGGGCATCAACACCT
GCGGGCACCAACCCTCGTGGTAGATCAGCTGCCGCACCCTGAACAAGGCA
CGGCGCAACGTGGTTCGCTCAACCCGACCTCCTTTGAACATGGCCTAGCG
GTAAGTTAATTATGTCAAGTCCCCCCGACGGCCCTGCCTGGTCGGGGGCT
CTGCCCTCTACATACTGCTGTGATTCTCCATACCGCTGCAGACTAGACAA
GAGTTGCCCGCGAGATGAAGCCGGGTTCAAGATCGTGTTCAAGCTGGTAC
GTAGGAGGGTGATCAAGAAGGTTGTCAAGTTGCTCACAGCTGTCTTGGTG
CTGTGATATACTACTGCTGTCTCCGCCGACAAGTAAGTGCTCGCCAATAG
CAGGGTCAACAGAGTGATGGTTGGGGACGATTCTATGGAATTAGACTATT
GTACGCCGCGCTCATTCTATGTTTTCCAGCGCTCGCCCATCAATCTTAGG
TTTTCAAGTCCAAAATAGATGCGTGTTTTAGGTGCTTCGCCTGTGATCAC
GGAAGGCAATCGCGTCACTTGGACCACTCAGTAGTACGGAAAACGTACTG
CTTTATTTAGTAGGAGAGGTACGAAGCGGACCCGAAAGGTTCATACTTCT
ATCAAGACAACAACTCACCCCAACAACGACAACGATTTTCGGCTGGCTGT
CATCGGTCTTCCACCCGCACTCCAAACCAAAACACACAGAGAGAGAGCGT
CTGCACGAATATCGTCCATCCCAACTTTACGCATCTCTGGCGACCAGACC
TCCCCCGCCCCGCCCCTTTCCCCCTCCTTCCGCTTGTGTCCCCACCTTCG
GCACCCTTTGTGATGGTACACCCCCATTCGTTCAAACACTGCTGCGTCGG
CTCCCAGGAATCCCGCGCGAACAACACCAGGTTGGCCCACTCCACTCTCG
TACCCCAGGCGGACGCTTCGACACGCACCGCAGAGGCCTCGGTAGAAGAC
AAGTCGATCGTAGATGGGGGCGACGGGGAAGTTGCATCCATTCGGCACGC
ATTCCGCGAGACCATTGGCACGGATGGCACTGTCCGGTCAGGGGTGAACC
AGAAATGTCTCACCTTCGAGGGAGCTGGGGTAAAGGCGTCGACAGACAAG
GTCAGGCTAGGACTGAACGGTTGGTTTGGTGTTGCTGTGAGGGCAGCAGT
TCAAACCTGGTTCTTGCTGAGCTTTGAGGGCAGCAGTTCAAACCTGGTTC
TTGCTGAATTTTCAAACCCCATACAAAAACGCCCACCACCAAATAAGTCC
CCTTCGCCGAACGTATCCAAACCCTCACGCACCATACCCGCACAGGGTAG
CACCTCCCGTCATCAGCCTCAAGCCACGCATTCGTACCGCGCAACCGCGG
CGCACCGGATCTGCGACGACGACATCTCCCCAGGATCGAATGGGATCCCG
CTAGGCGCGCAGCAGCCGTTTCTCACGCCAATCCCCGACGACCGCCTTCC
TGCTGAGACCTGCGAGACCGTCACCGACCAGCCAAGCTCGGATGACGAGG
AGGGTAAAACTACATCGAGGTCTTTGACGATCGAGGCGTCGGCAACGCAG
ACCAAGCCTGGCTATTCGGGCAACGCGGTTACCAACCAACACATGGACAA
GTCCCTGGTGGATCCTGGTGGTGCCGCGGTGGCAACGGCGGCGGCA
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Coding sequence (CDS) from alignment at S-firma_F_contig1056:10497..12342-

>mRNA_S-firma_F_contig1056.772.1 ID=mRNA_S-firma_F_contig1056.772.1|Name=mRNA_S-firma_F_contig1056.772.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1428bp|location=Sequence derived from alignment at S-firma_F_contig1056:10497..12342- (Sphaerotrichia firma ET2_F female)
ATGGCGGGGCATCAACACCTGCGGGCACCAACCCTCGTGGTAGATCAGCT
GCCGCACCCTGAACAAGGCACGGCGCAACGTGGTTCGCTCAACCCGACCT
CCTTTGAACATGGCCTAGCGATGGCGGGGCATCAACACCTGCGGGCACCA
ACCCTCGTGGTAGATCAGCTGCCGCACCCTGAACAAGGCACGGCGCAACG
TGGTTCGCTCAACCCGACCTCCTTTGAACATGGCCTAGCGGAATCCCGCG
CGAACAACACCAGGTTGGCCCACTCCACTCTCGTACCCCAGGCGGACGCT
TCGACACGCACCGCAGAGGCCTCGGTAGAAGACAAGTCGATCGTAGATGG
GGGCGACGGGGAAGTTGCATCCATTCGGCACGCATTCCGCGAGACCATTG
GCACGGATGGCACTGTCCGGTCAGGGGTGAACCAGAAATGTCTCACCTTC
GAGGGAGCTGGGGTAAAGGCGTCGACAGACAAGGAATCCCGCGCGAACAA
CACCAGGTTGGCCCACTCCACTCTCGTACCCCAGGCGGACGCTTCGACAC
GCACCGCAGAGGCCTCGGTAGAAGACAAGTCGATCGTAGATGGGGGCGAC
GGGGAAGTTGCATCCATTCGGCACGCATTCCGCGAGACCATTGGCACGGA
TGGCACTGTCCGGTCAGGGGTGAACCAGAAATGTCTCACCTTCGAGGGAG
CTGGGGTAAAGGCGTCGACAGACAAGGGTAGCACCTCCCGTCATCAGCCT
CAAGCCACGCATTCGTACCGCGCAACCGCGGCGCACCGGATCTGCGACGA
CGACATCTCCCCAGGATCGAATGGGATCCCGCTAGGCGCGCAGCAGCCGT
TTCTCACGCCAATCCCCGACGACCGCCTTCCTGCTGAGACCTGCGAGACC
GTCACCGACCAGCCAAGCTCGGATGACGAGGAGGGTAAAACTACATCGAG
GTCTTTGACGATCGAGGCGTCGGCAACGCAGACCAAGCCTGGCTATTCGG
GCAACGCGGTTACCAACCAACACATGGACAAGTCCCTGGTGGATCCTGGT
GGTGCCGCGGTGGCAACGGCGGCGGCAGGTAGCACCTCCCGTCATCAGCC
TCAAGCCACGCATTCGTACCGCGCAACCGCGGCGCACCGGATCTGCGACG
ACGACATCTCCCCAGGATCGAATGGGATCCCGCTAGGCGCGCAGCAGCCG
TTTCTCACGCCAATCCCCGACGACCGCCTTCCTGCTGAGACCTGCGAGAC
CGTCACCGACCAGCCAAGCTCGGATGACGAGGAGGGTAAAACTACATCGA
GGTCTTTGACGATCGAGGCGTCGGCAACGCAGACCAAGCCTGGCTATTCG
GGCAACGCGGTTACCAACCAACACATGGACAAGTCCCTGGTGGATCCTGG
TGGTGCCGCGGTGGCAACGGCGGCGGCA
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