mRNA_S-firma_F_contig10559.770.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10559.770.1
Unique NamemRNA_S-firma_F_contig10559.770.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10559.770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10559contigS-firma_F_contig10559:2102..2847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size234
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10559.770.1prot_S-firma_F_contig10559.770.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10559 2119..2847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.9690945-UTR-S-firma_F_contig10559:2101..21181622815591.9690945-UTR-S-firma_F_contig10559:2101..2118Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10559 2102..2118 -
1696949439.3360345-UTR-S-firma_F_contig10559:2101..21181696949439.3360345-UTR-S-firma_F_contig10559:2101..2118Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10559 2102..2118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.9866087-CDS-S-firma_F_contig10559:2118..22121622815591.9866087-CDS-S-firma_F_contig10559:2118..2212Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10559 2119..2212 -
1696949439.3457384-CDS-S-firma_F_contig10559:2118..22121696949439.3457384-CDS-S-firma_F_contig10559:2118..2212Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10559 2119..2212 -
1622815592.0025115-CDS-S-firma_F_contig10559:2707..28471622815592.0025115-CDS-S-firma_F_contig10559:2707..2847Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10559 2708..2847 -
1696949439.357916-CDS-S-firma_F_contig10559:2707..28471696949439.357916-CDS-S-firma_F_contig10559:2707..2847Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10559 2708..2847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10559.770.1

>prot_S-firma_F_contig10559.770.1 ID=prot_S-firma_F_contig10559.770.1|Name=mRNA_S-firma_F_contig10559.770.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=78bp
SRAAAECTRVERREAVRVSKQPASPTSEASICRAARVIRMWTCRRQRLRR
SRACRATRRATPTASLPRPLLPPRKRS*
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mRNA from alignment at S-firma_F_contig10559:2102..2847-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10559.770.1 ID=mRNA_S-firma_F_contig10559.770.1|Name=mRNA_S-firma_F_contig10559.770.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=746bp|location=Sequence derived from alignment at S-firma_F_contig10559:2102..2847- (Sphaerotrichia firma ET2_F female)
AGCAGAGCAGCAGCAGAGTGCACTCGCGTGGAGAGGAGGGAAGCTGTGCG
GGTGTCAAAGCAACCAGCATCCCCCACGAGTGAGGCTTCGATATGTCGAG
CAGCGAGAGTGATTCGGATGTGGACGTGCCGACGGCAAAGGTGTGTGGGT
TGTGTCTCCTGGTGTTTTTTTTGTTGGGCCTGTCTCCACCGCGCCACAGG
CAGCTAGCTCCTGTTCGTTCATTTGCCTTGGTTGACCTTGCGCCTGGCAG
CTGCCCCTGCTGCTTTGCCCCACGCTGGTAGCCTGGCGATTGCTGCCTCC
TGTGAGTCGTCTACCGATCCCGTTTCCTGCTTGTGTACGAGTCGCATACA
TACGGCCAAGCTGTATTTGTTTGCTTCCCGACGTTGGGGATTCCAGCCCT
TTGCGCCGCCGGCGAAGAGCGGAGGGCTGGTATTGTATACGCGTACCCAC
ACGCGTCATCTTCCCACAACAACCGTCGTTGTTCGGGGACGCATACAGAG
TGAACCTTATGGGGCACCCCTCACCATGCGGGCGTACATGTAGAAGTCAG
AAGCTGTGTCGCTCTCGAACTGTTTTGTAGTCTAGTATTTTGCGCCTCAC
ACAGAACCGGCACGCCGCCGCGCTGGTTGCAGCAGGCTTCGGCGTTCGCG
GGCATGTCGAGCGACTCGGAGAGCAACTCCGACAGCGAGCCTGCCTCGGC
CGCTCCTGCCGCCGCGGAAAAGGTCGTAGCGGCTGCCCCTGCGAAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10559:2102..2847-

>mRNA_S-firma_F_contig10559.770.1 ID=mRNA_S-firma_F_contig10559.770.1|Name=mRNA_S-firma_F_contig10559.770.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=468bp|location=Sequence derived from alignment at S-firma_F_contig10559:2102..2847- (Sphaerotrichia firma ET2_F female)
AGCAGAGCAGCAGCAGAGTGCACTCGCGTGGAGAGGAGGGAAGCTGTGCG
GGTGTCAAAGCAACCAGCATCCCCCACGAGTGAGGCTTCGATATGTCGAG
CAGCGAGAGTGATTCGGATGTGGACGTGCCGACGGCAAAGAGCAGAGCAG
CAGCAGAGTGCACTCGCGTGGAGAGGAGGGAAGCTGTGCGGGTGTCAAAG
CAACCAGCATCCCCCACGAGTGAGGCTTCGATATGTCGAGCAGCGAGAGT
GATTCGGATGTGGACGTGCCGACGGCAAAGGCTTCGGCGTTCGCGGGCAT
GTCGAGCGACTCGGAGAGCAACTCCGACAGCGAGCCTGCCTCGGCCGCTC
CTGCCGCCGCGGAAAAGGTCGTAGGCTTCGGCGTTCGCGGGCATGTCGAG
CGACTCGGAGAGCAACTCCGACAGCGAGCCTGCCTCGGCCGCTCCTGCCG
CCGCGGAAAAGGTCGTAG
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