mRNA_S-firma_F_contig10556.769.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10556.769.1
Unique NamemRNA_S-firma_F_contig10556.769.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10556.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10556contigS-firma_F_contig10556:886..4351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size594
Cds size594
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10556.769.1prot_S-firma_F_contig10556.769.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10556 886..4351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.8748808-CDS-S-firma_F_contig10556:885..10611622815591.8748808-CDS-S-firma_F_contig10556:885..1061Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 886..1061 +
1696949439.285222-CDS-S-firma_F_contig10556:885..10611696949439.285222-CDS-S-firma_F_contig10556:885..1061Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 886..1061 +
1622815591.8875184-CDS-S-firma_F_contig10556:1757..18841622815591.8875184-CDS-S-firma_F_contig10556:1757..1884Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 1758..1884 +
1696949439.2952685-CDS-S-firma_F_contig10556:1757..18841696949439.2952685-CDS-S-firma_F_contig10556:1757..1884Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 1758..1884 +
1622815591.9011188-CDS-S-firma_F_contig10556:2948..30591622815591.9011188-CDS-S-firma_F_contig10556:2948..3059Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 2949..3059 +
1696949439.3057203-CDS-S-firma_F_contig10556:2948..30591696949439.3057203-CDS-S-firma_F_contig10556:2948..3059Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 2949..3059 +
1622815591.9126525-CDS-S-firma_F_contig10556:3851..39861622815591.9126525-CDS-S-firma_F_contig10556:3851..3986Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 3852..3986 +
1696949439.3155274-CDS-S-firma_F_contig10556:3851..39861696949439.3155274-CDS-S-firma_F_contig10556:3851..3986Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 3852..3986 +
1622815591.9317381-CDS-S-firma_F_contig10556:4306..43511622815591.9317381-CDS-S-firma_F_contig10556:4306..4351Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 4307..4351 +
1696949439.3269956-CDS-S-firma_F_contig10556:4306..43511696949439.3269956-CDS-S-firma_F_contig10556:4306..4351Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10556 4307..4351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10556.769.1

>prot_S-firma_F_contig10556.769.1 ID=prot_S-firma_F_contig10556.769.1|Name=mRNA_S-firma_F_contig10556.769.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=198bp
RDELQSKAEEVAAIAEKAQSSLDSQAQLQDILKKKEAEQAQAARALAAKE
EERAGLESRLGELEGEQVSQAQELARVVSLRDAAVGKATKLEADLEAASS
QLAASEAKAGTKDAELSTMEAERDALGARVEVLSKEVESLTGDCSRVSEE
LAALKLQEAAREAAAAAAAAAASGEAGVAEAKEGAAEGSGELEIKIKT
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mRNA from alignment at S-firma_F_contig10556:886..4351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10556.769.1 ID=mRNA_S-firma_F_contig10556.769.1|Name=mRNA_S-firma_F_contig10556.769.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3466bp|location=Sequence derived from alignment at S-firma_F_contig10556:886..4351+ (Sphaerotrichia firma ET2_F female)
AGGGACGAGCTGCAGTCGAAGGCGGAGGAGGTGGCTGCGATCGCCGAGAA
AGCCCAGTCCTCGCTGGACTCTCAGGCCCAGCTACAGGACATTCTCAAGA
AGAAGGAGGCCGAACAAGCGCAGGCGGCGCGGGCACTGGCGGCGAAGGAA
GAGGAGAGGGCCGGCCTCGAATCCAGGTGTGTTTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTTTTTTCTCCTCCCATTAGTGTTTCTGTCGACTGCCCCA
CTGGCCCCCATCCTCCACTACGACTAGCTAGACGACCCAACCGGGACCGG
GGGGTGGTGTGTGTGTACGAAGTATGTTTTTTTTGTTTTTTTTCTGCGGG
AGTGAAAGGGAGAGAGAGGTGGAGACAGAGGAACTGAGGCAGTCAGAGAG
AGAGAAGGCGAGAGAGAAGGCGAGAGAGTGCCTGTGTACTTCTCCGCCTT
CTTCACCACCCACGGCTTGCTGTGCGTCATCGTTTCCCGTCCTTTTCAAA
GAGTTGTCGTCCGGTAGACTCCCAGAACATCCGTCAGCAAGCTCGCGCGG
AACCCTTCCTGAACGTGCGGCTTTGACTAGGAGCATGGTGCACACCATAT
CTCTTCCCCCGGTCCCGCTCCTCGCTGTGCCGTTGTAGCAAATTAGAGCC
TCGTGCGGGCAAATGAGAATATAGACACACAGGCGAGATGTGGCGTGGCA
GGACGACGATGTGCGCGTCCTTCGTAAATGTCGCTCCCCCTCTCAAAGCC
TGGTCGTCGAAGCGTTTCTCTCAGCTCCGCCTCTCAAAGCCAAGTCGTCG
AAGCGTTTCTCTCAGCGCCTTGCGTCTTAACCTCGTTTTTGCTTTCTTTG
CTCACCGGCCAACCTAACGCAGGCTCGGTGAGCTGGAGGGTGAGCAGGTC
TCTCAGGCTCAGGAGCTGGCGCGCGTGGTCTCTCTGAGGGACGCCGCCGT
GGGCAAGGCGACCAAGCTCGAGGCCGATCTGGAAGCGGCGTCATCTCAGG
TTCGTTCGTTAATCGTGTTCGCTTCTTCGTCACATTAATCATTAATTTGG
CTCGTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGTTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTCTTCACATAGGGAACCATCCCGAATCTCTCTACCCAGTACCCCCTTC
TTTCCCGTTCTGATGAATTGCTTTAATATTCCCACAATCCAACAACAGTG
TAGCATCTCACGGCCATCGCGATATCCGAAAGAACACAGGCAGAAAATGA
AGGCGAAGGGTACACAAAGAGACCACCTAAGTTGCCGCTGGTTGCTGGTT
GTCCAGACTGACTCTGCAGCTTGCGTTCATCAAGACCCCGTGTACCTAGA
TACCTAGCATGGGTGTACGATGCACGGTGTGTTGCAAGTGTGGTAGACAG
AGCGGCGCGAACAGCGAGCGAAGAGACCGTGGTCGAAAAGGAAATAGAGA
GTGATATGGCAGTATCAAGGTTTCAAGAATAGCCAGACAGTGATATGGCA
GTGACAAGGTTTCAAGAATAGCCAGAGAGTGATATGCCAGTGACAAGGTT
TCAAGAACAGCCTGAGAGTGATATGGCAGTGACAATGTTTCAAGTTTCAA
GCCAGAAGTGTGCGAGCAATGCAATGCGAATGGCGCACGCCCTGCCGTTG
TACACTTATGTTCATTGATGACCCTGGTGTCAACTAACATAGTTTGCTTC
GTGGCCTCCTGGTTGTGAGATGGCTCGCGTGTGGTCAACCAACAAATCGC
CCCGAAACGAAACCCCGAGAGTACTGTTCCGTTCGGGCTATTCGGGCTGT
TCGGGCTATTCGGGCATGCCTTTGTCTACCCTTTCCGATTTCCGACCTCC
CGCAGCACCACGCCCAGTTTTCCCGAGTGTTAAACTTTTACTACATACGG
CACCTTCTTTTGTTTCGGATTGCAGCACTTTTTTTTTTTTTTTTTTCATG
AACGTCTTACATCAACTTACCCCATTGCTGTTGCCGTCGCTGATGCTGCT
GCTGGCGCCTCAGCTGGCGGCTTCCGAGGCCAAGGCGGGAACCAAGGACG
CGGAGCTGTCCACCATGGAGGCCGAGCGCGACGCCCTAGGGGCCAGAGTC
GAGGTCCTCTCCAAAGAGGTAGAGGTGAGAAACAAAATAAAATAGAATAA
AATAACTTATTCACAGGACGGACGTATACGGCTGACGAATGTAGCCCTAG
GGGCCAGAGTCGAGGTCCTCGCCAAAGAGGTAGAGGCGAGAAATAAAATA
AAATAAAATAACTTATTCACAGGACTGACGTATACGGCTAACGAATGTAG
AAATTTTTAAAACAAAAAAAAAACAAATCACGCCAGGCCTATCCCCAAGC
AACGAACCCGACAGTACCCGAACTAGTCGTTCGGCAAATTTGTGCCGTTT
TTTGCTGCGACTGTTGCTGTTGCGCCTCGTGGGGTCTGTGGTGGTGGGGG
GGGGGGGTGGGGATACACGACGACCGGTGCCGCGGTCGCGGAGGGAGGTC
CGTCGCCAACCCTAGCTAGGCCTGGGCCAGGAGGTTAATGATGGTGTTTT
TAGGCTTCAAAGCACGCCGCGTTTGATCTCGGCGGCCATGCGTGTGCGAT
GCGGGTGGTGCTTTTTGATTCGTGTGAGGCCATGGGATGGGCATTGAGAA
GGGGGCTTGATTCCTGTCGACACCCAAAGCAGTCACGACCCGCCACAACA
CATCGAAGCAGTAGAAGCTCCCCTCTGCGAGCTGCTCTTGCTCCTCATTA
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATAAAAACCATGC
CGGTCTCTCTATCGTGTGGCGTGTGGCAATTCGTTGGTTCATTGGTGCTC
GTTGCCGCCCCTCCCTATCCCGACATCTGTGTGTGTGTGTGTGTGTTTTA
TTTTTTTTCGTCGCAGAGCCTGACTGGCGACTGCAGCAGGGTTTCGGAAG
AGCTCGCGGCGCTGAAGCTCCAGGAGGCGGCGCGGGAGGCGGCGGCTGCG
GCGGCGGCGGCGGCCGCTTCGGGAGAAGCCGGCGTCGCGGAGGCCAAAGA
GGTGCGCGATGTAGAACACCGCCTAGATAGTAGTACGTACGATACATCCC
GCGAGACATGGACAAGGGCGACAGCGGCGTGCTGCGTGTGGTGAAGCTGT
GGATGAAAGAACCGCCCGATACGAGTAGCCATGTAGATCGTATTCTATCT
ATGTCGGCTCTTTCTTTCTTGATGGGTGCGGACCTAACCTCCCGTCACCT
ATCCCCCCCCCCCCCCCCACGAGAATCAGTTGTTCCGAGCTCTTGCTTCA
ACGAAGTGGTCACCCGTGGTGTAGATGAAAAGGTGAAAGCTAAGCGTGTT
GCTGTGGCGTGCCATTTGCAGGGCGCCGCCGAGGGATCGGGAGAGCTCGA
GATCAAGATCAAGACG
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Coding sequence (CDS) from alignment at S-firma_F_contig10556:886..4351+

>mRNA_S-firma_F_contig10556.769.1 ID=mRNA_S-firma_F_contig10556.769.1|Name=mRNA_S-firma_F_contig10556.769.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1188bp|location=Sequence derived from alignment at S-firma_F_contig10556:886..4351+ (Sphaerotrichia firma ET2_F female)
AGGGACGAGCTGCAGTCGAAGGCGGAGGAGGTGGCTGCGATCGCCGAGAA
AGCCCAGTCCTCGCTGGACTCTCAGGCCCAGCTACAGGACATTCTCAAGA
AGAAGGAGGCCGAACAAGCGCAGGCGGCGCGGGCACTGGCGGCGAAGGAA
GAGGAGAGGGCCGGCCTCGAATCCAGAGGGACGAGCTGCAGTCGAAGGCG
GAGGAGGTGGCTGCGATCGCCGAGAAAGCCCAGTCCTCGCTGGACTCTCA
GGCCCAGCTACAGGACATTCTCAAGAAGAAGGAGGCCGAACAAGCGCAGG
CGGCGCGGGCACTGGCGGCGAAGGAAGAGGAGAGGGCCGGCCTCGAATCC
AGGCTCGGTGAGCTGGAGGGTGAGCAGGTCTCTCAGGCTCAGGAGCTGGC
GCGCGTGGTCTCTCTGAGGGACGCCGCCGTGGGCAAGGCGACCAAGCTCG
AGGCCGATCTGGAAGCGGCGTCATCTCAGGCTCGGTGAGCTGGAGGGTGA
GCAGGTCTCTCAGGCTCAGGAGCTGGCGCGCGTGGTCTCTCTGAGGGACG
CCGCCGTGGGCAAGGCGACCAAGCTCGAGGCCGATCTGGAAGCGGCGTCA
TCTCAGCTGGCGGCTTCCGAGGCCAAGGCGGGAACCAAGGACGCGGAGCT
GTCCACCATGGAGGCCGAGCGCGACGCCCTAGGGGCCAGAGTCGAGGTCC
TCTCCAAAGAGGTAGAGCTGGCGGCTTCCGAGGCCAAGGCGGGAACCAAG
GACGCGGAGCTGTCCACCATGGAGGCCGAGCGCGACGCCCTAGGGGCCAG
AGTCGAGGTCCTCTCCAAAGAGGTAGAGAGCCTGACTGGCGACTGCAGCA
GGGTTTCGGAAGAGCTCGCGGCGCTGAAGCTCCAGGAGGCGGCGCGGGAG
GCGGCGGCTGCGGCGGCGGCGGCGGCCGCTTCGGGAGAAGCCGGCGTCGC
GGAGGCCAAAGAGAGCCTGACTGGCGACTGCAGCAGGGTTTCGGAAGAGC
TCGCGGCGCTGAAGCTCCAGGAGGCGGCGCGGGAGGCGGCGGCTGCGGCG
GCGGCGGCGGCCGCTTCGGGAGAAGCCGGCGTCGCGGAGGCCAAAGAGGG
CGCCGCCGAGGGATCGGGAGAGCTCGAGATCAAGATCAAGACGGGCGCCG
CCGAGGGATCGGGAGAGCTCGAGATCAAGATCAAGACG
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