mRNA_S-firma_F_contig10547.757.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10547.757.1
Unique NamemRNA_S-firma_F_contig10547.757.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: A0A7S0P7P9_CAFRO (Alpha-L-fucosidase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P7P9_CAFRO)

HSP 1 Score: 160 bits (406), Expect = 2.840e-43
Identity = 82/157 (52.23%), Postives = 114/157 (72.61%), Query Frame = 1
Query:    1 VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLASTAGNVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLEYMAPGSSTYTTFANGTVIGHKHIEVGAANVTAVSARFTVSSSVGVPIITRFAAFSPC 471
            +R++S L++VYH SVG N+VLELDFAID+TGNVHPTHA  Y ALG+W+RACYGTPLA T+G+ S   +++PGG++ +++DRF+VQED   G+RVR +S++ +    S +T  A+GT +G K I + A  V A   R  VS S   P++  FAAF+PC
Sbjct:  487 IRSMSQLVDVYHASVGANSVLELDFAIDKTGNVHPTHAKAYKALGDWSRACYGTPLAGTSGSGSNFNVSIPGGAA-AVVDRFIVQEDQTYGQRVRAFSIQALGEDGS-WTEMASGTSVGQKRIALAANPVKASVFRLEVSQSTAEPMLLAFAAFAPC 641          
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: A0A5A8ELI6_CAFRO (Alpha-L-fucosidase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ELI6_CAFRO)

HSP 1 Score: 160 bits (406), Expect = 8.030e-43
Identity = 82/157 (52.23%), Postives = 114/157 (72.61%), Query Frame = 1
Query:    1 VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLASTAGNVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLEYMAPGSSTYTTFANGTVIGHKHIEVGAANVTAVSARFTVSSSVGVPIITRFAAFSPC 471
            +R++S L++VYH SVG N+VLELDFAID+TGNVHPTHA  Y ALG+W+RACYGTPLA T+G+ S   +++PGG++ +++DRF+VQED   G+RVR +S++ +    S +T  A+GT +G K I + A  V A   R  VS S   P++  FAAF+PC
Sbjct:  662 IRSMSQLVDVYHASVGANSVLELDFAIDKTGNVHPTHAKAYKALGDWSRACYGTPLAGTSGSGSNFNVSIPGGAA-AVVDRFIVQEDQTYGQRVRAFSIQALGEDGS-WTEMASGTSVGQKRIALAANPVKASVFRLEVSQSTAEPMLLAFAAFAPC 816          
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: A9UY68_MONBE (Alpha-L-fucosidase n=2 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UY68_MONBE)

HSP 1 Score: 151 bits (381), Expect = 4.980e-40
Identity = 82/159 (51.57%), Postives = 109/159 (68.55%), Query Frame = 1
Query:    1 VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLASTAGNVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLEYMAPGSSTYTTFANGTVIGHKHIEVGAANVTAVSA-RFTVSSSVGVPIITRFAAFSPCP 474
            +R++  ++ VYH +VGNN VLELDFAID TGNV    +A Y ALG WARACYG P+A+ +GN S + LTLP  S  + +DRF++QEDI  GERVR W ++     +  +  FANGT IGHK I +G+   ++++A R TV S+V  P+I  FAAF PCP
Sbjct:  417 LRSVQQMVEVYHMTVGNNQVLELDFAIDDTGNVPSDASAVYHALGAWARACYGMPVANMSGNSSSVLLTLP--SPATPVDRFILQEDIDFGERVRQWHIDVQVE-TGDWMPFANGTAIGHKRIVLGSGPSSSLTAARLTVDSAVASPVILAFAAFKPCP 572          
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: A9UY04_MONBE (Alpha-L-fucosidase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UY04_MONBE)

HSP 1 Score: 146 bits (369), Expect = 1.190e-39
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 1
Query:    1 VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLASTAGNVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLEYMAPGSSTYTTFANGTVIGHKHIEVGAANVTAVSA-RFTVSSSVGVPIITRFAAFSPCP 474
            +R++  ++ VYH +VGNN VLELDFAI+ TGNV    +A Y ALG WARACYG P+A+ +GN S + LTLP  S  + +DRF++QEDI   ERVR W ++     +  +  FANGT IGHK I +G+   ++++A R TV S+V  P+I  FAAF PCP
Sbjct:  215 LRSVQQMVEVYHMTVGNNQVLELDFAINDTGNVPSDASAVYHALGAWARACYGMPVANMSGNSSSVLLTLP--SPATPVDRFILQEDIDFDERVRQWHIDVQVE-TGDWMPFANGTAIGHKRIVLGSGPSSSLTAARLTVDSAVASPVILAFAAFKPCP 370          
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: A9VEC8_MONBE (Alpha-L-fucosidase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VEC8_MONBE)

HSP 1 Score: 144 bits (364), Expect = 1.390e-39
Identity = 80/150 (53.33%), Postives = 102/150 (68.00%), Query Frame = 1
Query:   28 VYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLASTAGNVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLEYMAPGSSTYTTFANGTVIGHKHIEVGAANVTAVSA-RFTVSSSVGVPIITRFAAFSPCP 474
            VYH +VGNN VLELDFAID TGNV    +A Y ALG W RACYG P+A+ +GN S + LTLP  S  + +DRF++QEDI  GERVR W ++     +  +  FANGT IGHK I +G+   ++++A R TV S+V  P+I  FAAF PCP
Sbjct:  154 VYHMTVGNNQVLELDFAIDDTGNVPSDASAVYHALGAWTRACYGMPVANMSGNSSSVLLTLP--SPATPVDRFILQEDIDFGERVRQWHIDVQVE-TGDWMPFANGTAIGHKRIVLGSGPSSSLTAARLTVDSAVASPVILAFAAFKPCP 300          
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: X6NWL8_RETFI (Alpha-L-fucosidase n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NWL8_RETFI)

HSP 1 Score: 118 bits (296), Expect = 8.760e-31
Identity = 77/166 (46.39%), Postives = 104/166 (62.65%), Query Frame = 1
Query:    1 VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLASTAGNVS-----QLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLEYMAPGSSTYTTFANGTVIGHKHI---EVGAANVTAVSARFTVSSSVGVPI-ITRFAAFSPC 471
            +++L +LI +YH +VGNN VLE+DFAID TGNVHP  AAQY ALG+  R CY TP+AST   ++      L+L+LP  +   +LDR +VQEDI+ G+RVR +S+E    G       AN T +GHK I   E    +VT+V+    +   VG  + I+ FAAF PC
Sbjct:   16 LKSLDELITIYHDTVGNNGVLEMDFAIDTTGNVHPNQAAQYKALGDTIRNCYSTPIASTNAILNGTANTTLQLSLPLHTY-DVLDRVIVQEDIQYGQRVRHFSIEVDGQG------VANWTSVGHKKILLFEKVFTDVTSVA--LVIDQFVGDAVFISNFAAFKPC 172          
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: F2U3E7_SALR5 (Alpha-L-fucosidase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U3E7_SALR5)

HSP 1 Score: 99.0 bits (245), Expect = 2.890e-21
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLASTAGNVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLE 300
            +R+L  +++VYH SVGNN VLELDFAI+R G V  THA  Y  LG+W RACYGTPLA+ +   + + LT          DRFM+QE    GERVR W ++
Sbjct:  346 IRSLGAMMDVYHASVGNNGVLELDFAINRDGLVDATHAVLYKQLGDWIRACYGTPLANASATGTTVTLTF---QQPVTTDRFMLQEAFESGERVRTWRID 442          
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: A0A818GWP9_9BILA (Alpha-L-fucosidase n=7 Tax=Adineta steineri TaxID=433720 RepID=A0A818GWP9_9BILA)

HSP 1 Score: 95.1 bits (235), Expect = 7.480e-20
Identity = 61/159 (38.36%), Postives = 97/159 (61.01%), Query Frame = 1
Query:    1 VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLAST---AGNVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLEYMAPGSSTYT----TFANGTVIGHKHIEVGAANVTAVSA-RFTVSSSVGVPIITRF 453
            +R LS+LI VYHQ+VG N +L LD   DRTG + P++A +Y  LG++ R+CYGT ++ T     + S + + L  GSS   +DR ++QED   G+ +R ++++     ++T+T    T A GT IG+K I+V +A    ++A R  ++ SV  P+I  F
Sbjct:  319 LRPLSELIQVYHQTVGRNCILMLDLTPDRTGLIPPSYARRYKELGDFIRSCYGTSISPTEYITFDDSNIHIIL-FGSSPVTVDRSVIQEDQTQGQVIRAYTIDIRL-ANTTHTDQWMTVAQGTSIGNKKIDVWSAGPQLINAVRLNITKSVDTPVIKAF 475          
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: A0A820LD07_9BILA (Alpha-L-fucosidase (Fragment) n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A820LD07_9BILA)

HSP 1 Score: 90.5 bits (223), Expect = 1.270e-19
Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    1 VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLASTAG---NVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLEYMAPGSSTYT----TFANGTVIGHKHIEVGAANVTAVSA-RFTVSSSVGVPIITRF 453
            +R+LS+LI VYHQ+VG N +L LD A DRTG +   HA +Y  LG++ R+CYGT ++ T     + S + + L   S    +DR ++QED   G+ +R ++++     ++T+T    T A GT IG+K I+V +A    ++A R  ++ SV  P+I  F
Sbjct:   37 LRSLSELIQVYHQTVGRNCILMLDLAPDRTGLIPIAHAIRYKELGDFIRSCYGTSISPTEHVTFDDSDIHILL-FDSFPVTVDRSVIQEDQTQGQVIRAYTVDIQL-ANTTHTDQWMTVAQGTSIGNKKIDVWSAGPQLINAIRLNITKSVDTPVIKAF 193          
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Match: A0A820C225_9BILA (Alpha-L-fucosidase (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820C225_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 5.120e-18
Identity = 58/159 (36.48%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    1 VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARACYGTPLAST---AGNVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLEYMAPGSSTYT----TFANGTVIGHKHIEVGAANVTAVSA-RFTVSSSVGVPIITRF 453
            +R LS+LI VYH++VG N +L LD   DRTG + P++A +Y  LG++ R+CYGT ++ T     + S + + L   S    +DR ++QED   G+ +R ++++     ++T+T    T A GT IG+K I+V +A    ++A R  ++ SV  P+I  F
Sbjct:  219 LRPLSELIQVYHETVGRNCILMLDLTPDRTGLIPPSYARRYKELGDFIRSCYGTSISPTEYITHDDSDIHILL-FDSFPVTVDRSVIQEDQTQGQVIRAYTVDIQL-ANTTHTDQWMTVAQGTSIGNKKIDVWSAGPQLINAIRLNITKSVDTPVIKAF 375          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10547.757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0P7P9_CAFRO2.840e-4352.23Alpha-L-fucosidase n=1 Tax=Cafeteria roenbergensis... [more]
A0A5A8ELI6_CAFRO8.030e-4352.23Alpha-L-fucosidase n=4 Tax=Cafeteria roenbergensis... [more]
A9UY68_MONBE4.980e-4051.57Alpha-L-fucosidase n=2 Tax=Monosiga brevicollis Ta... [more]
A9UY04_MONBE1.190e-3950.31Alpha-L-fucosidase n=1 Tax=Monosiga brevicollis Ta... [more]
A9VEC8_MONBE1.390e-3953.33Alpha-L-fucosidase n=1 Tax=Monosiga brevicollis Ta... [more]
X6NWL8_RETFI8.760e-3146.39Alpha-L-fucosidase n=1 Tax=Reticulomyxa filosa Tax... [more]
F2U3E7_SALR52.890e-2151.00Alpha-L-fucosidase n=1 Tax=Salpingoeca rosetta (st... [more]
A0A818GWP9_9BILA7.480e-2038.36Alpha-L-fucosidase n=7 Tax=Adineta steineri TaxID=... [more]
A0A820LD07_9BILA1.270e-1937.74Alpha-L-fucosidase (Fragment) n=2 Tax=Adineta stei... [more]
A0A820C225_9BILA5.120e-1836.48Alpha-L-fucosidase (Fragment) n=1 Tax=Adineta stei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10547contigS-firma_F_contig10547:131..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog81824.XP_001745228.1
PFAMsAlpha_L_fucos,F5_F8_type_C
Max annot lvl33154|Opisthokonta
Evalue8.17e-41
EggNOG OGsCOG3669@1|root,KOG3340@2759|Eukaryota,3A5J7@33154|Opisthokonta
DescriptionAlpha-L-fucosidase
COG categoryG
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.6498885-CDS-S-firma_F_contig10547:130..2111622815590.6498885-CDS-S-firma_F_contig10547:130..211Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10547 131..211 +
1696949438.4679365-CDS-S-firma_F_contig10547:130..2111696949438.4679365-CDS-S-firma_F_contig10547:130..211Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10547 131..211 +
1622815590.6650279-CDS-S-firma_F_contig10547:282..6841622815590.6650279-CDS-S-firma_F_contig10547:282..684Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10547 283..684 +
1696949438.4804666-CDS-S-firma_F_contig10547:282..6841696949438.4804666-CDS-S-firma_F_contig10547:282..684Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10547 283..684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10547.757.1prot_S-firma_F_contig10547.757.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10547 131..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10547.757.1

>prot_S-firma_F_contig10547.757.1 ID=prot_S-firma_F_contig10547.757.1|Name=mRNA_S-firma_F_contig10547.757.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=161bp
VRALSDLINVYHQSVGNNAVLELDFAIDRTGNVHPTHAAQYAALGNWARA
CYGTPLASTAGNVSQLELTLPGGSSGSLLDRFMVQEDIRLGERVRVWSLE
YMAPGSSTYTTFANGTVIGHKHIEVGAANVTAVSARFTVSSSVGVPIITR
FAAFSPCPRA*
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mRNA from alignment at S-firma_F_contig10547:131..684+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10547.757.1 ID=mRNA_S-firma_F_contig10547.757.1|Name=mRNA_S-firma_F_contig10547.757.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=554bp|location=Sequence derived from alignment at S-firma_F_contig10547:131..684+ (Sphaerotrichia firma ET2_F female)
GTCCGGGCACTGTCGGACCTGATTAACGTGTATCACCAGTCCGTCGGGAA CAACGCCGTCCTGGAACTTGATTTTGCCATTGTGCGTGCGAGTGGTGGTT GCGTTGAATCAACATGCTGCGCTTGCTGACCCTCCCCCCCCCCACTCGCA AGGACCGGACGGGCAACGTGCACCCCACCCACGCCGCCCAATACGCGGCC CTGGGCAACTGGGCCCGGGCTTGCTACGGCACCCCTCTCGCATCCACCGC CGGCAACGTCTCCCAGTTGGAGCTGACGCTGCCCGGCGGCAGCTCCGGCT CCCTCCTGGACCGCTTCATGGTGCAGGAGGACATTCGCCTTGGTGAGCGC GTCCGCGTGTGGAGCCTGGAGTACATGGCGCCGGGGTCCTCGACGTACAC CACCTTTGCCAACGGCACTGTCATTGGCCACAAGCACATTGAGGTGGGGG CGGCCAACGTGACAGCCGTTTCCGCGCGCTTCACCGTGTCCTCCTCCGTT GGCGTCCCCATCATCACACGGTTTGCGGCCTTCTCTCCCTGCCCTCGGGC GTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10547:131..684+

>mRNA_S-firma_F_contig10547.757.1 ID=mRNA_S-firma_F_contig10547.757.1|Name=mRNA_S-firma_F_contig10547.757.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=966bp|location=Sequence derived from alignment at S-firma_F_contig10547:131..684+ (Sphaerotrichia firma ET2_F female)
GTCCGGGCACTGTCGGACCTGATTAACGTGTATCACCAGTCCGTCGGGAA
CAACGCCGTCCTGGAACTTGATTTTGCCATTGTCCGGGCACTGTCGGACC
TGATTAACGTGTATCACCAGTCCGTCGGGAACAACGCCGTCCTGGAACTT
GATTTTGCCATTGACCGGACGGGCAACGTGCACCCCACCCACGCCGCCCA
ATACGCGGCCCTGGGCAACTGGGCCCGGGCTTGCTACGGCACCCCTCTCG
CATCCACCGCCGGCAACGTCTCCCAGTTGGAGCTGACGCTGCCCGGCGGC
AGCTCCGGCTCCCTCCTGGACCGCTTCATGGTGCAGGAGGACATTCGCCT
TGGTGAGCGCGTCCGCGTGTGGAGCCTGGAGTACATGGCGCCGGGGTCCT
CGACGTACACCACCTTTGCCAACGGCACTGTCATTGGCCACAAGCACATT
GAGGTGGGGGCGGCCAACGTGACAGCCGTTTCCGCGCGCTTCACCGTGTC
CTCCTCCGTTGGCGTCCCCATCATCACACGGTTTGCGGCCTTCTCTCCCT
GCCCTCGGGCGTAAGACCGGACGGGCAACGTGCACCCCACCCACGCCGCC
CAATACGCGGCCCTGGGCAACTGGGCCCGGGCTTGCTACGGCACCCCTCT
CGCATCCACCGCCGGCAACGTCTCCCAGTTGGAGCTGACGCTGCCCGGCG
GCAGCTCCGGCTCCCTCCTGGACCGCTTCATGGTGCAGGAGGACATTCGC
CTTGGTGAGCGCGTCCGCGTGTGGAGCCTGGAGTACATGGCGCCGGGGTC
CTCGACGTACACCACCTTTGCCAACGGCACTGTCATTGGCCACAAGCACA
TTGAGGTGGGGGCGGCCAACGTGACAGCCGTTTCCGCGCGCTTCACCGTG
TCCTCCTCCGTTGGCGTCCCCATCATCACACGGTTTGCGGCCTTCTCTCC
CTGCCCTCGGGCGTAA
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