mRNA_S-firma_F_contig10529.738.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE) HSP 1 Score: 344 bits (882), Expect = 7.190e-115 Identity = 161/180 (89.44%), Postives = 174/180 (96.67%), Query Frame = 1
Query: 1 YWIFTSDVYIYDGVKLELHADSGTTGMRLKSDSKIIELRAHGGWLSLLNTELSSWDEDESDYASNSNDSAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDIINSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNAE 540
YW+FTSDVYIYDGVKLELHA+SGTTGMRLKSDSK+IELRAHGGWLSLLNTELSSWD DE+DYASN SAPRSYVTAISEVL++P +TC+GHAKNDAGEARFDIINSEVHHLG+ GTEAYGITWKVRGFCVDLSNEDLF+RVNVRGDIRFSDIHHN+FGMYTYGHQDGLWEYNLMH+NA+
Sbjct: 103 YWLFTSDVYIYDGVKLELHAESGTTGMRLKSDSKVIELRAHGGWLSLLNTELSSWDVDEADYASNY--SAPRSYVTAISEVLDSPPQTCVGHAKNDAGEARFDIINSEVHHLGHYGTEAYGITWKVRGFCVDLSNEDLFDRVNVRGDIRFSDIHHNYFGMYTYGHQDGLWEYNLMHENAK 280
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI) HSP 1 Score: 293 bits (750), Expect = 2.420e-96 Identity = 144/185 (77.84%), Postives = 158/185 (85.41%), Query Frame = 1
Query: 1 YWIFTSDVYIYDGVKLELHADSGTTGMRLKSDSKIIELRAHGGWLSLLNTELSSWDEDESDYASNSNDSAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDI-----INSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNAE 540
YW+FTSDVYIYDGVKLELHA+SGTTGMRLKSDSK+IELRAHGGWLSLLNTELSSWD DE+DYASN SAPRSYVTAISEVLETP +TC+GHAKNDAGEARFD H + + Y +VRGFCVDLSNEDLF+RVNVRG+IRFSDIHHN+FGMYTYGHQDGLWEYNLMH+NA+
Sbjct: 27 YWLFTSDVYIYDGVKLELHAESGTTGMRLKSDSKVIELRAHGGWLSLLNTELSSWDVDEADYASNY--SAPRSYVTAISEVLETPPQTCVGHAKNDAGEARFDSDVEPRAAPSAQHTRFFSLQTYA-RQQVRGFCVDLSNEDLFDRVNVRGNIRFSDIHHNYFGMYTYGHQDGLWEYNLMHENAK 208
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI) HSP 1 Score: 198 bits (504), Expect = 3.870e-58 Identity = 95/180 (52.78%), Postives = 130/180 (72.22%), Query Frame = 1
Query: 4 WIFTSDVYIYDGVKLELHADSGTTGMRLKSDS-KIIELRAHGGWLSLLNTELSSWDEDESDYASNSND-SAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDIINSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNA 537
W+ T +Y+ G L LH D G T +R+ S S + L GG++S+LNT+++SW + + + D S PRSY++A+SE+ P +TC G A +DAGEAR DIINS+V +LGY+ E+YG+T+KVRG+C D SN ++F+RVNVRGDIRFSDIHHN+FG Y+YGHQDGLWEYN M ++
Sbjct: 97 WLLTKHLYMRPGTTLLLHDDLGCTELRIASSSTNALHLNTFGGYISILNTKVTSWSVSNKEPDAGAYDGSNPRSYMSAVSEMTH-PSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQDGLWEYNTMRNSG 275
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 189 bits (480), Expect = 7.660e-55 Identity = 94/182 (51.65%), Postives = 126/182 (69.23%), Query Frame = 1
Query: 4 WIFTSDVYIYDGVKLELH---ADSGTTGMRLKSDSK-IIELRAHGGWLSLLNTELSSWDEDESDYASNSNDSAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDIINSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNA 537
W+ T ++Y+ DG+ L++H A +RL S S I LRA+GG L L+T++ +WD ++ A + ++S RSY++A+SEV+ +TC G AKN+ GEAR DI NSE+ +LGY GTE YG+TWKVRGFCVD N +LF+ VNV G+I SDIHHN FG+YTYGHQ G W N MHDN+
Sbjct: 74 WLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKN--APDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNS 253
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 187 bits (475), Expect = 7.150e-54 Identity = 95/182 (52.20%), Postives = 124/182 (68.13%), Query Frame = 1
Query: 4 WIFTSDVYIYDGVKLELHADSG---TTGMRLKSDSK-IIELRAHGGWLSLLNTELSSWDEDESDYASNSNDSAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDIINSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNA 537
W+ T ++++ DG+ L++H S +RL S S I LRAHGG L L+T++ +WD + + D RSYV+A+SEV+ +TC G AKN+ GEAR DI +SE+ +LGY G+E+YG+TWKVRGFCVD SN DLFE VNV G+I SDIHHN FG+YTYGHQ G W N MHDN+
Sbjct: 100 WLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDG--RSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNS 279
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI) HSP 1 Score: 186 bits (471), Expect = 7.650e-52 Identity = 93/183 (50.82%), Postives = 127/183 (69.40%), Query Frame = 1
Query: 4 WIFTSDVYIYDGVKLELHA-DSG--TTGMRLKSD-SKIIELRAHGGWLSLLNTELSSWDEDESDYASNSNDSAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDIINSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNAE 540
W+ T ++Y+ DGV L++H D G +RL SD + I LRAHGG S L T++ SW+E + +N D RSY++A+SEV+ P +TC G AK++ GEAR D+I+SE+ LGY +E+YG+TWKVRGFC+D SN D+F+ VNV GD+ S+IH N+FG Y+YGHQ G W YN MH+N E
Sbjct: 411 WLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSWNEGKGTVDTNHEDG--RSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCIDKSNLDVFDFVNVYGDMINSNIHDNYFGHYSYGHQGGNWSYNKMHENVE 591
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 181 bits (460), Expect = 1.230e-51 Identity = 89/183 (48.63%), Postives = 123/183 (67.21%), Query Frame = 1
Query: 4 WIFTSDVYIYDGVKLELHADSG---TTGMRLKSDSK-IIELRAHGGWLSLLNTELSSWDEDESDYASNSNDSAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDIINSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNAE 540
W+ T D+Y+ DG+ L++H S +RL S SK I LRAHGG L ++T++ +WD ++ ++ S RSY++A+SE++ E C G AK GEAR DI +SE+ +LGY+G+E+YG+TWKVRGFC D SN ++F+ VNV G+I SDIHHN FG+YTYGH+ G W N MH N E
Sbjct: 103 WLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDG--SKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNRE 283
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 181 bits (459), Expect = 1.620e-51 Identity = 89/183 (48.63%), Postives = 124/183 (67.76%), Query Frame = 1
Query: 4 WIFTSDVYIYDGVKLELHADSG---TTGMRLKSDSK-IIELRAHGGWLSLLNTELSSWDEDESDYASNSNDSAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDIINSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNAE 540
W+ T +Y+ DG+ L++H S +RL S SK I LRAHGG L ++T++ +WD ++ ++DS RSY++A+SEV+ + C G AK + GEAR DI +SE+ +LGY G+E+YG+TWKVRG C DLSN ++F+ VNV G+I SDIHHN+FG+YTYGH+ G W N MH N E
Sbjct: 100 WLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKV--RTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTE 280
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 176 bits (447), Expect = 1.300e-50 Identity = 88/182 (48.35%), Postives = 125/182 (68.68%), Query Frame = 1
Query: 4 WIFTSDVYIYDGVKLELH---ADSGTTGMRLKSDSK-IIELRAHGGWLSLLNTELSSWDEDESDYASNSNDSAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDIINSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNA 537
W+ T ++Y+ DG+ LE++ A +RL S ++ I LRAHGG L ++T++ SWD S + + +++ RSY++AISE++ ETC G+AKN GEAR DI +SE+ +LGY +E+YG+TWKVRGFC D SN ++F+ VNV G++ SDIHH FG+YTYGHQ G W N MHDN+
Sbjct: 103 WLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDT--STNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNS 282
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 174 bits (440), Expect = 3.330e-50 Identity = 88/183 (48.09%), Postives = 125/183 (68.31%), Query Frame = 1
Query: 4 WIFTSDVYIYDGVKLELHADSGTTG----MRLKSDSKI-IELRAHGGWLSLLNTELSSWDEDESDYASNSNDSAPRSYVTAISEVLETPLETCIGHAKNDAGEARFDIINSEVHHLGYKGTEAYGITWKVRGFCVDLSNEDLFERVNVRGDIRFSDIHHNFFGMYTYGHQDGLWEYNLMHDNA 537
W+ T ++Y+ DG+ L+++ +G G +RL S + I LRAHGG L + T++ SWD S + + +++ RSY++AISE++ ETC G+AKN GEAR DI NSE+ +LG++ +E+YG+TWKVRGFC D SN +F+ VNV G++ SDIHH FG+YTYGHQ G W N MHDN+
Sbjct: 106 WLLTEELYVEDGITLKVYG-TGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDT--STNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNS 285 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10529.738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10529.738.1 >prot_S-firma_F_contig10529.738.1 ID=prot_S-firma_F_contig10529.738.1|Name=mRNA_S-firma_F_contig10529.738.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=181bp YWIFTSDVYIYDGVKLELHADSGTTGMRLKSDSKIIELRAHGGWLSLLNTback to top mRNA from alignment at S-firma_F_contig10529:1245..4812- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10529.738.1 ID=mRNA_S-firma_F_contig10529.738.1|Name=mRNA_S-firma_F_contig10529.738.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3568bp|location=Sequence derived from alignment at S-firma_F_contig10529:1245..4812- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10529:1245..4812- >mRNA_S-firma_F_contig10529.738.1 ID=mRNA_S-firma_F_contig10529.738.1|Name=mRNA_S-firma_F_contig10529.738.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1086bp|location=Sequence derived from alignment at S-firma_F_contig10529:1245..4812- (Sphaerotrichia firma ET2_F female)back to top |