mRNA_S-firma_F_contig10518.727.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10518.727.1
Unique NamemRNA_S-firma_F_contig10518.727.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10518.727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10518contigS-firma_F_contig10518:3184..4635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size806
Cds size756
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10518.727.1prot_S-firma_F_contig10518.727.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10518 3234..4635 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.7941906-UTR-S-firma_F_contig10518:3183..32331622815587.7941906-UTR-S-firma_F_contig10518:3183..3233Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10518 3184..3233 +
1696949436.665896-UTR-S-firma_F_contig10518:3183..32331696949436.665896-UTR-S-firma_F_contig10518:3183..3233Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10518 3184..3233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.8102887-CDS-S-firma_F_contig10518:3233..34131622815587.8102887-CDS-S-firma_F_contig10518:3233..3413Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10518 3234..3413 +
1696949436.6748798-CDS-S-firma_F_contig10518:3233..34131696949436.6748798-CDS-S-firma_F_contig10518:3233..3413Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10518 3234..3413 +
1622815587.8219693-CDS-S-firma_F_contig10518:4059..46351622815587.8219693-CDS-S-firma_F_contig10518:4059..4635Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10518 4060..4635 +
1696949436.6866376-CDS-S-firma_F_contig10518:4059..46351696949436.6866376-CDS-S-firma_F_contig10518:4059..4635Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10518 4060..4635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10518.727.1

>prot_S-firma_F_contig10518.727.1 ID=prot_S-firma_F_contig10518.727.1|Name=mRNA_S-firma_F_contig10518.727.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=252bp
MAALENDPTPSSRLCSDSGGNTLRLRRRAKSRPRRVGPYGALLLMSTLVQ
RSMAAGSFFKGNSRGNTAPPRPPTSSNNCNDNPAPPSGRGGGRGAALSPA
MYTRVSSAPADADGAAGGRGRAGAEAGLGLKGRQHADVGSANQRPGPGFG
GGGGGGREDKKTRHASTDARNSQITESLLAKRNGGSCSTGNPPQSSRTPR
GDAASAWRGAGGVGQGYTGVSPETARREAFLAAGRTPSGRRAALEPRAGA
GG
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mRNA from alignment at S-firma_F_contig10518:3184..4635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10518.727.1 ID=mRNA_S-firma_F_contig10518.727.1|Name=mRNA_S-firma_F_contig10518.727.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1452bp|location=Sequence derived from alignment at S-firma_F_contig10518:3184..4635+ (Sphaerotrichia firma ET2_F female)
TTTATTTGACAACACTCGTGCTCTGGGCCTGAGAGGTCTCTCTCTCGACG
ATGGCAGCGCTCGAGAACGATCCGACACCAAGCTCTAGGCTGTGCTCAGA
CAGCGGTGGAAACACCTTGCGCCTCCGGCGGAGGGCGAAGAGCAGACCCC
GCAGGGTGGGTCCCTATGGTGCTCTCCTGTTGATGTCGACCCTGGTGCAG
CGCTCGATGGCCGCCGGTAGCTTCTTCAAGGTGCGCGAACGAGGATGTTT
TTTTTATTGCTTCGGCAGACTTGACCGACCCTCGCTCAACACACCGCCGT
CGTAGCGTCGTAGCATATGATATGCATGTTTACGAGCACAGCATCTAACA
GGCGCTCACCTAACGTGGTGCACACACTGCAGAACAACGTATAGTTGACG
CCGCCGGGATCAAGAGTCAGCAAAGGGAGACAGAGAAGAGGGACCGATCA
CCGAATTCTGCCCGCTTGGTCGTGTCCCTGCGAAACACACAATAACTCGC
CGCTCCGCCTTCCGCGTGGCTCCTCCATAACTAGACTACTGCACTGCTGT
AGGCCACCCGGCCGCGGGCATGCGGGATTCCCGCGCCTCACTGTTCGTGC
AGGATTCAGGCCGTTAACAATTTCCAAACTCCAGAGGCAGCGGCTCGTGA
CTATGTCTTTCCCATCACATACCGCTGTGTTTCAAGTGTGGTCGGCTCTC
ACACGCAGCGCTTGGCGATCTCCACCGCCGCACACAACTGACAAGGTATC
TCTGTCCTTACCAAACCCTACTTTCCCGGTTTTAGGTACGAGACAACCCA
TCTCGAGGGCAGATCATTGACCCCACCCCCCCTCCACCCACCGCCCGCGC
GCACCCTCACCTTTCTGAGAGATCAGGGCAACAGCCGCGGCAACACCGCG
CCGCCGCGACCACCAACATCATCCAACAACTGTAACGACAACCCGGCCCC
ACCGAGCGGCCGCGGCGGCGGGCGGGGCGCGGCGCTTTCCCCGGCCATGT
ACACCAGGGTTTCCAGTGCACCAGCAGATGCTGATGGGGCAGCAGGAGGG
CGAGGCAGAGCAGGAGCCGAGGCAGGCTTGGGATTGAAGGGCAGACAACA
CGCCGATGTCGGGTCCGCCAATCAGCGGCCGGGGCCGGGTTTCGGCGGCG
GCGGCGGCGGTGGTAGGGAGGACAAAAAAACGCGCCACGCCTCCACCGAC
GCAAGAAATAGTCAAATCACGGAATCGTTGCTCGCAAAAAGGAACGGCGG
CAGCTGCAGCACCGGCAATCCACCACAATCCAGCAGAACACCCAGAGGCG
ACGCAGCATCGGCGTGGCGCGGGGCGGGCGGCGTGGGACAAGGATACACC
GGGGTTTCACCGGAAACAGCTCGCAGGGAGGCGTTCTTGGCGGCGGGGAG
AACTCCCTCGGGGAGGCGGGCGGCGCTGGAGCCCCGGGCAGGTGCGGGCG
GC
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Coding sequence (CDS) from alignment at S-firma_F_contig10518:3184..4635+

>mRNA_S-firma_F_contig10518.727.1 ID=mRNA_S-firma_F_contig10518.727.1|Name=mRNA_S-firma_F_contig10518.727.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1512bp|location=Sequence derived from alignment at S-firma_F_contig10518:3184..4635+ (Sphaerotrichia firma ET2_F female)
ATGGCAGCGCTCGAGAACGATCCGACACCAAGCTCTAGGCTGTGCTCAGA
CAGCGGTGGAAACACCTTGCGCCTCCGGCGGAGGGCGAAGAGCAGACCCC
GCAGGGTGGGTCCCTATGGTGCTCTCCTGTTGATGTCGACCCTGGTGCAG
CGCTCGATGGCCGCCGGTAGCTTCTTCAAGATGGCAGCGCTCGAGAACGA
TCCGACACCAAGCTCTAGGCTGTGCTCAGACAGCGGTGGAAACACCTTGC
GCCTCCGGCGGAGGGCGAAGAGCAGACCCCGCAGGGTGGGTCCCTATGGT
GCTCTCCTGTTGATGTCGACCCTGGTGCAGCGCTCGATGGCCGCCGGTAG
CTTCTTCAAGGGCAACAGCCGCGGCAACACCGCGCCGCCGCGACCACCAA
CATCATCCAACAACTGTAACGACAACCCGGCCCCACCGAGCGGCCGCGGC
GGCGGGCGGGGCGCGGCGCTTTCCCCGGCCATGTACACCAGGGTTTCCAG
TGCACCAGCAGATGCTGATGGGGCAGCAGGAGGGCGAGGCAGAGCAGGAG
CCGAGGCAGGCTTGGGATTGAAGGGCAGACAACACGCCGATGTCGGGTCC
GCCAATCAGCGGCCGGGGCCGGGTTTCGGCGGCGGCGGCGGCGGTGGTAG
GGAGGACAAAAAAACGCGCCACGCCTCCACCGACGCAAGAAATAGTCAAA
TCACGGAATCGTTGCTCGCAAAAAGGAACGGCGGCAGCTGCAGCACCGGC
AATCCACCACAATCCAGCAGAACACCCAGAGGCGACGCAGCATCGGCGTG
GCGCGGGGCGGGCGGCGTGGGACAAGGATACACCGGGGTTTCACCGGAAA
CAGCTCGCAGGGAGGCGTTCTTGGCGGCGGGGAGAACTCCCTCGGGGAGG
CGGGCGGCGCTGGAGCCCCGGGCAGGTGCGGGCGGCGGCAACAGCCGCGG
CAACACCGCGCCGCCGCGACCACCAACATCATCCAACAACTGTAACGACA
ACCCGGCCCCACCGAGCGGCCGCGGCGGCGGGCGGGGCGCGGCGCTTTCC
CCGGCCATGTACACCAGGGTTTCCAGTGCACCAGCAGATGCTGATGGGGC
AGCAGGAGGGCGAGGCAGAGCAGGAGCCGAGGCAGGCTTGGGATTGAAGG
GCAGACAACACGCCGATGTCGGGTCCGCCAATCAGCGGCCGGGGCCGGGT
TTCGGCGGCGGCGGCGGCGGTGGTAGGGAGGACAAAAAAACGCGCCACGC
CTCCACCGACGCAAGAAATAGTCAAATCACGGAATCGTTGCTCGCAAAAA
GGAACGGCGGCAGCTGCAGCACCGGCAATCCACCACAATCCAGCAGAACA
CCCAGAGGCGACGCAGCATCGGCGTGGCGCGGGGCGGGCGGCGTGGGACA
AGGATACACCGGGGTTTCACCGGAAACAGCTCGCAGGGAGGCGTTCTTGG
CGGCGGGGAGAACTCCCTCGGGGAGGCGGGCGGCGCTGGAGCCCCGGGCA
GGTGCGGGCGGC
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