mRNA_S-firma_F_contig10518.726.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10518.726.1
Unique NamemRNA_S-firma_F_contig10518.726.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: A0A6H5J8I8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8I8_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.090e-48
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 2 
Query:  218 MADPGKKVKMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRGGLAGGAAG 505
            MADPGK+  MPWGMKIGGLKPGAKETITDKKLK FVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGG DDGKTFLRGG+AGG  G
Sbjct:    1 MADPGKR--MPWGMKIGGLKPGAKETITDKKLKAFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGPDDGKTFLRGGVAGGRGG 94
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: D7FSA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA5_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.600e-43
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 2 
Query:  218 MADPGKKVKMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRGGLAGGAAG 505
            MADPGK+  MPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGG DDGKTFLRGG+AGG  G
Sbjct:    1 MADPGKR--MPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGPDDGKTFLRGGVAGGRGG 94
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: A0A3F2RWP2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWP2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.050e-15
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 2 
Query:  128 HASRGPTADSRGLPPSLERGGLCLASVWG*MADPGKKVKMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRG 481
            H+ R   A S+G PPS               A P    ++PWGM+   ++P + +++TD KL  FV+G QKK++ QKERE +E KK++AD EAAKIY  FV SFD      GK F+RG
Sbjct:    5 HSRRSDDAPSQGSPPS--------------QAQP----QLPWGMEKAEMQPSSLKSLTDDKLARFVLGHQKKTKFQKEREDREAKKRQADAEAAKIYATFVASFDNEDRTKGKAFVRG 104
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: A0A8J5M413_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M413_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.530e-14
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2 
Query:  221 ADPGKKVKMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRGG 484
            A P  + ++PWGM+   ++P +  ++TD KL  FV+G+QKK++ QKERE +E KK++AD EAAKIY  FV SFD      GK F+RGG
Sbjct:   18 AQPPAQPQLPWGMEKTEMQPSSLTSLTDDKLARFVLGQQKKTKFQKEREDREAKKRQADEEAAKIYATFVASFDNEDETKGKAFVRGG 105
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: A0A0W8D174_PHYNI (Dual specificity protein kinase shkD n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D174_PHYNI)

HSP 1 Score: 77.8 bits (190), Expect = 3.060e-14
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:  224 DPGKKVKMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRGG 484
            DP +  K+PWGM+   ++P +  ++TD KL  FV+G QKK++ QKERE +E KK++AD EAA+IY  FV SFD      GK F+RGG
Sbjct:   20 DPAQS-KLPWGMEKTEMQPSSLTSLTDDKLARFVLGHQKKTKFQKEREDREAKKRQADEEAARIYATFVASFDNEDDTKGKAFVRGG 105
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: G5AB50_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AB50_PHYSP)

HSP 1 Score: 79.3 bits (194), Expect = 3.940e-14
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 2 
Query:  221 ADPGKKVKMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRGG 484
            A P  +  +PWGM+   ++P +   +TD KL  FV+G QKK++ QKERE +E KK++AD EAAKIY  FV SFD      GK F+RGG
Sbjct:   19 AAPAPQTPLPWGMEKTEMQPSSLTALTDDKLARFVLGHQKKTKFQKEREDREAKKRQADEEAAKIYATFVASFDNEDETKGKAFVRGG 106
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: A0A225VBK9_9STRA (U2-associated splicing factor n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBK9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.360e-14
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 2 
Query:  242 KMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRGGL 487
            ++PWGM+   ++P +  ++TD KL  FV+G QKK++ QKERE +E KK++AD EAAKIY  FV SFD      GK F+RGG+
Sbjct:   18 QLPWGMEKTEMQPSSMTSMTDDKLARFVLGHQKKTKFQKEREDREAKKRQADEEAAKIYATFVASFDNEDESKGKAFVRGGM 99
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: K3X1G9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1G9_GLOUD)

HSP 1 Score: 77.8 bits (190), Expect = 1.340e-13
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:  245 MPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRG 481
            +PWGM+   ++PG+   +TD KL  FV+G+QKK++ +K+RE +E KK++AD EAAKIY QFV SF+   A  GK F+RG
Sbjct:   28 LPWGMEKTQMQPGSLTALTDDKLARFVIGQQKKTKFEKDREDREAKKRQADEEAAKIYAQFVASFEDEDATLGKAFVRG 106
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: W2PZL8_PHYPN (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=W2PZL8_PHYPN)

HSP 1 Score: 77.8 bits (190), Expect = 1.380e-13
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:  224 DPGKKVKMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRGG 484
            DP +  K+PWGM+   ++P +  ++TD KL  FV+G QKK++ QKERE +E KK++AD EAA+IY  FV SFD      GK F+RGG
Sbjct:   20 DPAQS-KLPWGMEKTEMQPSSLTSLTDDKLARFVLGHQKKTKFQKEREDREAKKRQADEEAARIYATFVASFDNEDDTKGKAFVRGG 105
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BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Match: A0A7S2WJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJA8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.470e-13
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 2 
Query:  263 IGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRGG 484
            +  LKPGA +TI+D KL TFV+G+QKK+R QKE+E +E K+K+   EAA IY+ FV SF+G G  D KTF+RGG
Sbjct:   29 MSNLKPGAMKTISDNKLATFVIGQQKKTRFQKEKEAREAKRKQQLAEAADIYKDFVASFEGDG--DSKTFVRGG 100
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10518.726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8I8_9PHAE1.090e-4891.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FSA5_ECTSI1.600e-4392.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3F2RWP2_9STRA6.050e-1543.22Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8J5M413_9STRA1.530e-1450.00Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A0W8D174_PHYNI3.060e-1450.57Dual specificity protein kinase shkD n=1 Tax=Phyto... [more]
G5AB50_PHYSP3.940e-1450.00Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A225VBK9_9STRA5.360e-1451.22U2-associated splicing factor n=1 Tax=Phytophthora... [more]
K3X1G9_GLOUD1.340e-1351.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2PZL8_PHYPN1.380e-1350.57Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]
A0A7S2WJA8_9STRA2.470e-1358.11Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10518contigS-firma_F_contig10518:1828..3002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FSA5
Preferred nameU2SURP
PFAMsCTD_bind,RRM_1,Surp,cwf21
Max annot lvl2759|Eukaryota
KEGG koko:K02878,ko:K12842
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00178
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005685,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017069,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Evalue3.85e-45
EggNOG OGsKOG0151@1|root,KOG0151@2759|Eukaryota
DescriptionU2 snRNP-associated SURP
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size506
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10518.726.1prot_S-firma_F_contig10518.726.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10518 1828..2785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.8578084-CDS-S-firma_F_contig10518:1827..19741622815587.8578084-CDS-S-firma_F_contig10518:1827..1974Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10518 1828..1974 -
1696949436.7001956-CDS-S-firma_F_contig10518:1827..19741696949436.7001956-CDS-S-firma_F_contig10518:1827..1974Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10518 1828..1974 -
1622815587.8697863-CDS-S-firma_F_contig10518:2644..27851622815587.8697863-CDS-S-firma_F_contig10518:2644..2785Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10518 2645..2785 -
1696949436.7111216-CDS-S-firma_F_contig10518:2644..27851696949436.7111216-CDS-S-firma_F_contig10518:2644..2785Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10518 2645..2785 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.8843136-UTR-S-firma_F_contig10518:2785..30021622815587.8843136-UTR-S-firma_F_contig10518:2785..3002Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10518 2786..3002 -
1696949436.7201447-UTR-S-firma_F_contig10518:2785..30021696949436.7201447-UTR-S-firma_F_contig10518:2785..3002Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10518 2786..3002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10518.726.1

>prot_S-firma_F_contig10518.726.1 ID=prot_S-firma_F_contig10518.726.1|Name=mRNA_S-firma_F_contig10518.726.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=96bp
MADPGKKVKMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKERE
VKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRGGLAGGAAG
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mRNA from alignment at S-firma_F_contig10518:1828..3002-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10518.726.1 ID=mRNA_S-firma_F_contig10518.726.1|Name=mRNA_S-firma_F_contig10518.726.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1175bp|location=Sequence derived from alignment at S-firma_F_contig10518:1828..3002- (Sphaerotrichia firma ET2_F female)
CCAGCTCACTCCTCGCTTAACCTGTAGCTTCGTTTCCAGAGAGAGGAAAC
AGAGAGCAAACGACGCGCCGGGGAGAAAGTCGAGCTTGTAACAAAGTCCG
GCTAGGTTGTTACCTTGACAGCAAGGCCACGCCTCGAGAGGCCCAACAGC
GGACAGCAGAGGACTCCCTCCCTCTCTCGAGAGAGGAGGGTTGTGTCTCG
CCTCTGTGTGGGGCTAGATGGCGGATCCAGGAAAGAAGGTGAAGATGCCT
TGGGGTATGAAGATCGGCGGGCTCAAGCCTGGCGCGAAGGAAACCATCAC
GGACAAGAAGCTCAAGACGTTCGTCGTCGGCAAGCAGAAGAAGAGCAGGC
TACAAAAGGTGTGCGCGCAAAACAGATGATCCATAAAATACAAAAGAAAC
CACGCTAATGTAGAGCCAAGAGATTTTCTTCTCTGCTGGACTAACCTACA
CTCCACTAGGTAAACTACCTACACGCCGCTCCAATGACTGTGTGCACTCA
ATGTAACAACGCAGCCGTGTGTTTGGATACATTGATTGGCATGTCATTGT
CGCACGGGAGGAATGGTGCCGCTTGCTACTCGTAGGGAGCACACTAGATA
CCATAGTCGTGGATTGCGTGGTACAAATACTAAAGGGCCGTCCCTAACAA
GCGTTTTGTAGCTCTGCCACGTCCTGCTCTGTGCGCGATGTGTGTGCAGG
AGAGCTGTGAAAGAGTGTGCTGGCTGCCGTATCATATGGGAGGGAGACAT
ATCCTTACCCCAACGATGTGCACTGGGGATGTTTAGTGAAAATACAGCAG
TATATTGCACACATCGTGATACTCTCTCTCACGTTTGATGTACAGTATCA
TACAACAAGCGGGGCAACCATTGTAGTGATCGTGTGCCACAACACAGCAC
AGGCGGGGGGGGCGTATGTTGAAACACCACACACTTTTGACACCTTTCGA
CAAACTAGTTGTACCATGGACACGATAAACAACACGCCACCGCCGTCCCC
CTTCCCGCCCCATGTACCCGCCTCGCAGGAGCGAGAAGTGAAGGAGGAAA
AGAAGAAAGAGGCGGACGTGGAGGCGGCCAAGATCTACGAGCAGTTCGTG
CAGTCCTTCGACGGCGGGGGCGCCGACGACGGCAAGACCTTCCTCAGGGG
AGGCCTCGCCGGGGGGGCCGCCGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10518:1828..3002-

>mRNA_S-firma_F_contig10518.726.1 ID=mRNA_S-firma_F_contig10518.726.1|Name=mRNA_S-firma_F_contig10518.726.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=576bp|location=Sequence derived from alignment at S-firma_F_contig10518:1828..3002- (Sphaerotrichia firma ET2_F female)
ATGGCGGATCCAGGAAAGAAGGTGAAGATGCCTTGGGGTATGAAGATCGG
CGGGCTCAAGCCTGGCGCGAAGGAAACCATCACGGACAAGAAGCTCAAGA
CGTTCGTCGTCGGCAAGCAGAAGAAGAGCAGGCTACAAAAGATGGCGGAT
CCAGGAAAGAAGGTGAAGATGCCTTGGGGTATGAAGATCGGCGGGCTCAA
GCCTGGCGCGAAGGAAACCATCACGGACAAGAAGCTCAAGACGTTCGTCG
TCGGCAAGCAGAAGAAGAGCAGGCTACAAAAGGAGCGAGAAGTGAAGGAG
GAAAAGAAGAAAGAGGCGGACGTGGAGGCGGCCAAGATCTACGAGCAGTT
CGTGCAGTCCTTCGACGGCGGGGGCGCCGACGACGGCAAGACCTTCCTCA
GGGGAGGCCTCGCCGGGGGGGCCGCCGGCGAGCGAGAAGTGAAGGAGGAA
AAGAAGAAAGAGGCGGACGTGGAGGCGGCCAAGATCTACGAGCAGTTCGT
GCAGTCCTTCGACGGCGGGGGCGCCGACGACGGCAAGACCTTCCTCAGGG
GAGGCCTCGCCGGGGGGGCCGCCGGC
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