mRNA_S-firma_F_contig10517.725.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10517.725.1
Unique NamemRNA_S-firma_F_contig10517.725.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 6.420e-55
Identity = 117/205 (57.07%), Postives = 137/205 (66.83%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDEDIDNPATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRSRHAKAAAGNTSS---HDHGNGDEGEESEVARSESIAGFEYDRPSKIGKGVGGEAEAEGGGRVKDGDATGQLGFEMGGAMYTASSDGCVVGPGGRAEGLRLEMVPLFGVGLDGVFRTVVGFL 1287
            H  C+ + +GL A VD+LLRWGADET LN  G SP + L          NPA QDEID TRLLL+RAP DRAWRRRGWLVMLRSR +KA  G   S   +DHG+G E   SE+ARSE +AG +Y RP     G GGE EA GG  V+D  A G LG      ++TAS+DGCVVG  G  EGLRLE++ L G+GL+GVFR VVGFL
Sbjct:   23 HETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRSSGGYDHGDGGEVGGSEMARSEGMAGADYGRPGTTRNGAGGEVEAGGGEEVQD-IAAGLLGLRRKSVVHTASNDGCVVGAEGGEEGLRLEVLLLLGLGLEGVFRAVVGFL 226
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.980e-21
Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDEDIDNPATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRSRHAKAAAGNTSSHDHGNGDEG 996
            HWAC+ Q +G+ A VDLLLRWGADETAL+ND ++P +LLD E+D+E+     ++ EI+  RLL+ARAP +RAWRRR WLVMLRS +AK A   T +   G+ DEG
Sbjct:  262 HWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLD-EDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRS-YAKTARATTEAT--GDADEG 362
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 8.590e-21
Identity = 63/108 (58.33%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDEDIDNPATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRS--RHAKAAAGNTSSHDHGNGDEGE 999
            H AC+ Q KGL A VDLLLRWGADETALNN G++P  LLD E+D+E+     ++ EI+  R+LLARAP DRAWRRR WLVMLRS  R AKA    T     G+ D G+
Sbjct:  344 HVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLD-EHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKATTDETGDAHEGSNDAGD 450
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.670e-19
Identity = 79/204 (38.73%), Postives = 105/204 (51.47%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDEDIDNPATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRS--RHAKAAAGNTSSHDHGNGDEGEESEVARSESIAGFEYDRPSKIGKGVGGEAEAEGGGRVKDGDATGQLGFEMGGAMYTASSDGCVVGPGGRAEGLRLEMVPLFGVGLDGVFRTVVGFL 1287
            H AC+ Q  G+ A VDLLL+WGADETA++NDG +P + L VEN++E+    +T  EI   RLLLARAP +RAWRRR WLVMLRS  + A+A    T   D G+ D G+                   K GK  G   E                G   GG + +  +    VG  G A GL   +  + G+G + VFR+++ FL
Sbjct:  285 HRACYRQDIGVEATVDLLLQWGADETAVHNDGNTPADWL-VENNNENGTTCSTA-EIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDADEGSNDVGDR------------------KDGKCKGARREN---------------GESAGGGVRSRMNGAGEVGVEGGASGLASIVASVVGLGPEEVFRSILSFL 453
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.060e-18
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDEDIDNPATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRS--RHAKAAAGNTSSHDHGNGDEGE 999
            H AC+ Q  GL A VDLLLRWGADETALNNDG++P +LLD E+D+E+     ++ EI+  RLLLARAP D+A RRR WLVMLRS  R  +A    T     G+ D G+
Sbjct:  558 HLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLD-EHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSFARTTRATTDETGDAHEGSNDAGD 664
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.230e-17
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDEDIDNP-ATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRSR 936
            H AC  Q +GLAA +DLLLRWGADETA N  G++P+++L         DNP  + DE+D  RLLL RAP DR WRRRGWLV+LRSR
Sbjct:  347 HRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATR----TDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSR 428
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: A0A6H5J7H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.480e-14
Identity = 76/205 (37.07%), Postives = 103/205 (50.24%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDEDIDNPATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRS--RHAKAAAGNTSSHDHGNGDEGEESEVARSESIAGFEYDRPSKIGKGVGGEAEAEGGGRVKDGDATGQ-LGFEMGGAMYTASSDGCVVGPGGRAEGLRLEMVPLFGVGLDGVFRTVVGFL 1287
            H AC+ Q KGL A V LLLR GADETA+N+  ++P +LL   +DD+      ++ EI+  RLLLARAP +RAW  R WLVMLRS  +  +A+   T   D  + D G                DR S   KGV          R ++G++ G  +   M GA          VG  G A G    +  + G+  + VFR++VGFL
Sbjct:  114 HRACYWQHKGLEATVGLLLRSGADETAVNSADETPADLLGYLDDDDG--KRYSEAEIERVRLLLARAPTNRAWLGRCWLVMLRSCAKTGRASTDETVGADEDSNDAG----------------DRKSGKFKGV----------RRENGESAGSWVRSRMNGAGE--------VGVEGGAGGWASIVASVVGLEPEKVFRSIVGFL 282
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.240e-14
Identity = 77/205 (37.56%), Postives = 102/205 (49.76%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDEDIDNPATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRSRHAKAAAGNTSSHDHGNGDEGEESEVARSESIAGFEYDRPSKIGKGVGGE---AEAEGGGRVKDGDATGQLGFEMGGAMYTASSDGCVVGPGGRAEGLRLEMVPLFGVGLDGVFRTVVGFL 1287
            H AC+ + KG+ A VDLLLR            Q+PV++LD E+DDE+     ++ E +  RLLLARAP +RAWR R WLVMLRS  AK A  N+ +     GD  E+S  AR         DR  K+GK  G      E+ GGG     +  G+ G E                   RA G    +  + G+G + VFR++VGFL
Sbjct:  283 HRACYWRDKGMEATVDLLLRXXXXXXXXXXXXQTPVDMLD-EHDDENDGTTCSEAEFERVRLLLARAPANRAWRHRCWLVMLRS-CAKTARANSDA----TGDADEDSNDAR---------DR--KVGKCKGARRENGESAGGGVRSRMNGAGEGGVER------------------RAGGWASVVASVIGLGPEEVFRSIVGFL 452
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.320e-12
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDEDIDNPATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRSR 936
            H A   Q+ G+  VVDLLLRWGA ETA+N  G +P E+         I  P   +E     +LLARAP DRAWRRRGW+VMLR+R
Sbjct:  277 HLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLA----IHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRAR 357
[Close]
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.410e-12
Identity = 84/226 (37.17%), Postives = 106/226 (46.90%), Query Frame = 1 
Query:  682 HWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVEND-----DEDIDNPATQ-------------DEIDSTRLLLARAPVDRAWRRRGWLVMLRSRHAKAAAGNTSSHDHGNGDEGEESEVARSESIAGFEYDRPSKIGKGVGGEAEAEGGG-----RVKDGDATGQLGFEMGGAMYTASSDGCVVGPGGRAEGLRLEMVP-LFGVGLDGVFRTVVGFL 1287
            H  C   S+G+  +VDLLLRWGA ETA+N +G +P ++L V        D   D  AT+              EI   R+LLARAP DR WRRR WLVMLR+R A+   G  SS   G+G +  E+   R+           SK+GK   G A  EG G     R +DG AT                 G   G GG        +VP L G+  + VFRT+V FL
Sbjct:  347 HLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRAR-AERGRGAPSS---GSGSDRTEAATGRNLPRHEEADGDNSKVGKTDAG-AVGEGSGPTDGERGRDGRAT----------------RGAAAGEGG--------LVPALVGLESEEVFRTIVCFL 543
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10517.725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNI8_ECTSI6.420e-5557.07EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JRY1_9PHAE2.980e-2157.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS36_ECTSI8.590e-2158.33Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRZ8_ECTSI1.670e-1938.73Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWW4_9PHAE1.060e-1855.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLL7_ECTSI2.230e-1759.30Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5J7H5_9PHAE1.480e-1437.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRS0_ECTSI2.240e-1437.56Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FSI6_ECTSI3.320e-1251.76Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5K1F4_9PHAE9.410e-1237.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10517contigS-firma_F_contig10517:2..3772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LS36
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,Motile_Sperm
Max annot lvl2759|Eukaryota
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Evalue1.39e-22
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
COG categoryI
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size2411
Cds size1218
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10517.725.1prot_S-firma_F_contig10517.725.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10517 74..1291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.7203834-UTR-S-firma_F_contig10517:1..731622815587.7203834-UTR-S-firma_F_contig10517:1..73Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10517 2..73 +
1696949436.6212022-UTR-S-firma_F_contig10517:1..731696949436.6212022-UTR-S-firma_F_contig10517:1..73Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10517 2..73 +
1622815587.7409084-UTR-S-firma_F_contig10517:1291..13191622815587.7409084-UTR-S-firma_F_contig10517:1291..1319Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10517 1292..1319 +
1696949436.6442668-UTR-S-firma_F_contig10517:1291..13191696949436.6442668-UTR-S-firma_F_contig10517:1291..1319Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10517 1292..1319 +
1622815587.7537658-UTR-S-firma_F_contig10517:2679..37721622815587.7537658-UTR-S-firma_F_contig10517:2679..3772Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10517 2680..3772 +
1696949436.6564434-UTR-S-firma_F_contig10517:2679..37721696949436.6564434-UTR-S-firma_F_contig10517:2679..3772Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10517 2680..3772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.7310603-CDS-S-firma_F_contig10517:73..12911622815587.7310603-CDS-S-firma_F_contig10517:73..1291Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10517 74..1291 +
1696949436.6340234-CDS-S-firma_F_contig10517:73..12911696949436.6340234-CDS-S-firma_F_contig10517:73..1291Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10517 74..1291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10517.725.1

>prot_S-firma_F_contig10517.725.1 ID=prot_S-firma_F_contig10517.725.1|Name=mRNA_S-firma_F_contig10517.725.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=406bp
MSVLYEATMGGHEQLATELLIGGADPNCRGGEHGASPLHVAANRGFGGIV
STLQLRGADKNALDNDGATPLMRAVYGDDLSIVTTLLAAGADEGIRRTDG
YSALDFAARKGYGDVIKAIVGHGADVNAGDDNGFTALHAAAAYDQADAVH
ALVEAGADVELKNSNGGTPLVTSAYHSNGKAMLALLQHGAKVDVRDNDGV
TPLHWACFGQSKGLAAVVDLLLRWGADETALNNDGQSPVELLDVENDDED
IDNPATQDEIDSTRLLLARAPVDRAWRRRGWLVMLRSRHAKAAAGNTSSH
DHGNGDEGEESEVARSESIAGFEYDRPSKIGKGVGGEAEAEGGGRVKDGD
ATGQLGFEMGGAMYTASSDGCVVGPGGRAEGLRLEMVPLFGVGLDGVFRT
VVGFL*
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mRNA from alignment at S-firma_F_contig10517:2..3772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10517.725.1 ID=mRNA_S-firma_F_contig10517.725.1|Name=mRNA_S-firma_F_contig10517.725.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3771bp|location=Sequence derived from alignment at S-firma_F_contig10517:2..3772+ (Sphaerotrichia firma ET2_F female)
GGTCACGAGGCTGTTGCTAGACGCTTGATCGTTGCCGGAGCGGACGTGAA
CTTTCAGGACCCGGTACGCCAGATGTCTGTCCTGTACGAAGCTACCATGG
GTGGGCATGAGCAGTTGGCGACCGAGTTGTTGATAGGCGGGGCCGACCCC
AACTGTCGGGGTGGCGAACACGGCGCCTCTCCTCTCCATGTCGCTGCCAA
TAGAGGATTTGGCGGGATTGTGTCCACTCTGCAGCTGAGAGGGGCGGACA
AGAATGCTCTCGACAATGACGGGGCGACACCACTGATGCGGGCAGTCTAT
GGAGATGATCTGTCCATCGTGACGACCCTACTGGCCGCCGGTGCCGATGA
GGGCATCCGGCGCACCGATGGGTACTCAGCGCTCGACTTTGCTGCTAGGA
AGGGATATGGTGACGTGATAAAAGCCATCGTAGGACATGGGGCAGACGTG
AACGCCGGTGATGACAACGGCTTCACCGCCCTCCACGCTGCTGCTGCATA
CGACCAAGCGGATGCTGTTCACGCCCTAGTTGAGGCTGGGGCCGACGTCG
AGCTCAAGAACTCGAACGGGGGAACGCCTCTTGTAACTTCCGCGTATCAC
AGCAATGGCAAAGCAATGCTGGCGCTGTTGCAGCACGGAGCGAAGGTTGA
CGTTCGAGACAATGACGGAGTTACGCCACTGCACTGGGCTTGTTTTGGGC
AAAGCAAAGGGTTAGCGGCGGTCGTGGATCTACTGTTGCGATGGGGAGCA
GACGAAACAGCCTTGAACAACGATGGTCAGAGCCCCGTGGAACTGCTCGA
TGTGGAAAATGACGACGAGGATATCGACAATCCTGCGACGCAAGACGAAA
TCGATAGTACACGGTTGCTTTTGGCTCGAGCTCCAGTCGACAGGGCGTGG
CGTCGCCGGGGCTGGTTGGTCATGCTGCGCTCGCGCCACGCGAAGGCTGC
GGCGGGAAATACCAGCTCTCACGACCACGGCAATGGCGATGAGGGCGAGG
AATCTGAAGTGGCGAGGAGCGAGAGCATAGCCGGCTTTGAATACGACAGA
CCTAGCAAAATAGGCAAAGGTGTGGGTGGTGAGGCTGAAGCCGAAGGCGG
GGGAAGGGTCAAAGATGGTGACGCAACAGGGCAGCTGGGGTTCGAAATGG
GAGGCGCGATGTACACGGCGAGCAGCGACGGGTGCGTGGTTGGACCCGGA
GGCAGAGCGGAGGGCTTGCGGTTGGAAATGGTGCCGCTGTTTGGGGTCGG
GCTGGATGGCGTGTTTCGCACGGTGGTGGGCTTTCTTTGATGGGGAGGCC
TTCTTCTTGGAGCTTCCGGTGAGGTCATTGGTGTGCGCCACTGCTTGAAC
GGCCGACTGTGCTATGTTCAATGGCATCGACTTATCGGCTTGCACAGATA
TGACGTAGTTTGTCGGTTGTCAAAATCTCTTGGGGCGTGACAATCGACCG
GAAGTGATGCCCACATCTGTCCCGACTTTTGGGTCAGTAGCTTGTACCAG
GTATCAGAGATCAGGCCAGTGGGTATTCTTTGAAAGACTGGAGCACCTAG
GTGGTCTCGGATCTGTCGTCTCTCTCGCGAGATGATAAATTGGAACTCTT
GGGCTGTGTGCAGCAGAATCACACACGGCGTCGAATTTACTCGAAAGAGC
TGACAGCGGCTGTAGCTCAACGCTCTGCTCCACATATTTTGCGTCTCCGT
CTCGTATTCCGCCCCCGGAAAGCTAAAAATAAAATACGATGTAGTCTACA
TCAGTCAATCCGCGTGTTTTTTTTGTCGCCGAATCGAACCATCTGAGAGA
CAAAATATTGTAGGCACACTCTGTCAGAACGTTGTTCCGGTCGCTGGTCG
GCCTCTCGCGACCCCGTGACGGTGGTACAGCACACACACACACATGCACT
CACGCTAGGTTCCCCCGCGAGATCCGCGTAGTTTATCAGCGGAGATCCCG
AAAAACATGCTTGGGGATATTTCGAGTTTCGAGTGCGTTCCCCTCATGAA
CAATACACGGAGAATGTTTCTCTCATGCTATGAGATCCACACTGCGTGAC
CTTGCACGTGGTCGGTTGCCGCTCCCTGTACCAACTCTTTCCAGAGGGAG
CCGTTGTGACTATGAAACAGGGCTTCAATTGTATGGGTAGTTGGCTGTGG
CTTAGTCGCTGTACCGTCTTTCCGGGTACTCCCCTTCTTTGCTCTTTTGA
TCTCTTCGAATTCACCACACGCCCTCGCAATTTCGGTACTCTAGTCAACA
GGGATTGCGCGATTGATGCTCGCTACCCGTGGAGCCTTGTTCATATTTCG
GTCGTTTGTCAGTAACGGCGGTGCCTCTGGTTTGCTGTATGGTGTTTTTC
TCTTGGCCGTGTCTCGCCGCTCTTGGGACCGGTACAGATTGCTGTCATTT
GCTGTTTACGATTGGTCAACGGCTACTGCAGCAAGATGGAACGCATGAAA
CAACACGCTTGGGTGTACGCTCGAACTATCTCCCGGATGGGTTTGAAACG
GCGTTTGACACTTGCTTCTCAGGCGGGCTTCCATTTCATTGAGCCAGAAC
CGAAGAATGTTTTTTACATGATTTTGAAGACCATCGGAGGGCCACTCGCA
ACTCCCCCTAGACGACACGACGTTGTATCTTGCGTAGCGTGCTGATCTAC
CCACCGCCCATTTCTCGCCGTTCGTCAGCCAACTTGGACCAAAACAGATG
CATGCACGTGTTCAAGGGCGCCAAGAACCAGCACAACTGCTGTTCTCTGC
CGTGAAGATGCCGTGTGGACTTCGGAGAGAACGGGCGCGTCGCAGGGTGT
GCATGATCCCTCCTTTGCACAAGACGGTTTGATGTGGTGTTGGGATGACG
AAGTCGCGCCTACGGTACTCGAATACCGTTAGTGGTTGATGTGCTTGCTC
ATCTGATATGCCTTGGGATTTGTTTTTTTTTGTGAATGGGCGTTGTTCCT
AAACCCGCGCCGTGTCTCTTCCCGTTGGAACCTATATCTACCGTGTTGAC
ACTACTACTAAGACTTGCATTTCTTTTGACTTGAGAGGTCGAAAATCGCC
GTCTCCCTCTGTTCAGTTTTTCTGATTTTTTTGATCTTATTCTGTTGTTT
ACGTGCCGTCTCCGCCTTGGGTTTGTTGGGAGGGTCTATTGAGCAGCACT
CCAGACAGCAGTTGCAGTAGGTCTACCTCGGCGATTTCTGTATGTGGCGT
TCGCATGTCTGCAGACAGGATTTTCGTGACGTATTGCTGTAGTTCGATCG
GGCGTTCTCTACATCGATTCGTGGTGCAGGTTGCCTCACCCTTGTGTGTG
TTTTTGTGGCTCTATTTTGGCTTGCTGCTAGCCATGTTATATTTTTTGGG
TACTGATGTTAGGCTCCTTGCGCTCTGTGACCACGGGAATTGGCCGTGTC
TGATGGATCAGTACGGACAATGGGGGGTACTGGGTGGAGAGACCGGGATG
TTTGTTTATTTTTCAATGTGAAGACAACAACCAACTAACTGCAACATCAG
AGCAGGTGTGCAGCGACGGACGTAGGTGTTTGTGTACTGTTTCGTGGGGT
CTCTACGTGGTGCCCGACGTACACGGGGGGCGCCTTGCGTGACCTTGCGA
CTTTCCCATGGGTGGGCATTTTGGATTTTGGGAGTTCTTTGATGTTGGTG
CTTCATATGTTGCTGATGCCCCATCTTACACGGCTGCGACATGACTTTTC
ATAGAATACATCCATTGCTTCCCCTTGCAGAATATGCACTCCATGGGCTA
GTTCGTACACTGACAAGCGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10517:2..3772+

>mRNA_S-firma_F_contig10517.725.1 ID=mRNA_S-firma_F_contig10517.725.1|Name=mRNA_S-firma_F_contig10517.725.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2436bp|location=Sequence derived from alignment at S-firma_F_contig10517:2..3772+ (Sphaerotrichia firma ET2_F female)
ATGTCTGTCCTGTACGAAGCTACCATGGGTGGGCATGAGCAGTTGGCGAC
CGAGTTGTTGATAGGCGGGGCCGACCCCAACTGTCGGGGTGGCGAACACG
GCGCCTCTCCTCTCCATGTCGCTGCCAATAGAGGATTTGGCGGGATTGTG
TCCACTCTGCAGCTGAGAGGGGCGGACAAGAATGCTCTCGACAATGACGG
GGCGACACCACTGATGCGGGCAGTCTATGGAGATGATCTGTCCATCGTGA
CGACCCTACTGGCCGCCGGTGCCGATGAGGGCATCCGGCGCACCGATGGG
TACTCAGCGCTCGACTTTGCTGCTAGGAAGGGATATGGTGACGTGATAAA
AGCCATCGTAGGACATGGGGCAGACGTGAACGCCGGTGATGACAACGGCT
TCACCGCCCTCCACGCTGCTGCTGCATACGACCAAGCGGATGCTGTTCAC
GCCCTAGTTGAGGCTGGGGCCGACGTCGAGCTCAAGAACTCGAACGGGGG
AACGCCTCTTGTAACTTCCGCGTATCACAGCAATGGCAAAGCAATGCTGG
CGCTGTTGCAGCACGGAGCGAAGGTTGACGTTCGAGACAATGACGGAGTT
ACGCCACTGCACTGGGCTTGTTTTGGGCAAAGCAAAGGGTTAGCGGCGGT
CGTGGATCTACTGTTGCGATGGGGAGCAGACGAAACAGCCTTGAACAACG
ATGGTCAGAGCCCCGTGGAACTGCTCGATGTGGAAAATGACGACGAGGAT
ATCGACAATCCTGCGACGCAAGACGAAATCGATAGTACACGGTTGCTTTT
GGCTCGAGCTCCAGTCGACAGGGCGTGGCGTCGCCGGGGCTGGTTGGTCA
TGCTGCGCTCGCGCCACGCGAAGGCTGCGGCGGGAAATACCAGCTCTCAC
GACCACGGCAATGGCGATGAGGGCGAGGAATCTGAAGTGGCGAGGAGCGA
GAGCATAGCCGGCTTTGAATACGACAGACCTAGCAAAATAGGCAAAGGTG
TGGGTGGTGAGGCTGAAGCCGAAGGCGGGGGAAGGGTCAAAGATGGTGAC
GCAACAGGGCAGCTGGGGTTCGAAATGGGAGGCGCGATGTACACGGCGAG
CAGCGACGGGTGCGTGGTTGGACCCGGAGGCAGAGCGGAGGGCTTGCGGT
TGGAAATGGTGCCGCTGTTTGGGGTCGGGCTGGATGGCGTGTTTCGCACG
GTGGTGGGCTTTCTTTGAATGTCTGTCCTGTACGAAGCTACCATGGGTGG
GCATGAGCAGTTGGCGACCGAGTTGTTGATAGGCGGGGCCGACCCCAACT
GTCGGGGTGGCGAACACGGCGCCTCTCCTCTCCATGTCGCTGCCAATAGA
GGATTTGGCGGGATTGTGTCCACTCTGCAGCTGAGAGGGGCGGACAAGAA
TGCTCTCGACAATGACGGGGCGACACCACTGATGCGGGCAGTCTATGGAG
ATGATCTGTCCATCGTGACGACCCTACTGGCCGCCGGTGCCGATGAGGGC
ATCCGGCGCACCGATGGGTACTCAGCGCTCGACTTTGCTGCTAGGAAGGG
ATATGGTGACGTGATAAAAGCCATCGTAGGACATGGGGCAGACGTGAACG
CCGGTGATGACAACGGCTTCACCGCCCTCCACGCTGCTGCTGCATACGAC
CAAGCGGATGCTGTTCACGCCCTAGTTGAGGCTGGGGCCGACGTCGAGCT
CAAGAACTCGAACGGGGGAACGCCTCTTGTAACTTCCGCGTATCACAGCA
ATGGCAAAGCAATGCTGGCGCTGTTGCAGCACGGAGCGAAGGTTGACGTT
CGAGACAATGACGGAGTTACGCCACTGCACTGGGCTTGTTTTGGGCAAAG
CAAAGGGTTAGCGGCGGTCGTGGATCTACTGTTGCGATGGGGAGCAGACG
AAACAGCCTTGAACAACGATGGTCAGAGCCCCGTGGAACTGCTCGATGTG
GAAAATGACGACGAGGATATCGACAATCCTGCGACGCAAGACGAAATCGA
TAGTACACGGTTGCTTTTGGCTCGAGCTCCAGTCGACAGGGCGTGGCGTC
GCCGGGGCTGGTTGGTCATGCTGCGCTCGCGCCACGCGAAGGCTGCGGCG
GGAAATACCAGCTCTCACGACCACGGCAATGGCGATGAGGGCGAGGAATC
TGAAGTGGCGAGGAGCGAGAGCATAGCCGGCTTTGAATACGACAGACCTA
GCAAAATAGGCAAAGGTGTGGGTGGTGAGGCTGAAGCCGAAGGCGGGGGA
AGGGTCAAAGATGGTGACGCAACAGGGCAGCTGGGGTTCGAAATGGGAGG
CGCGATGTACACGGCGAGCAGCGACGGGTGCGTGGTTGGACCCGGAGGCA
GAGCGGAGGGCTTGCGGTTGGAAATGGTGCCGCTGTTTGGGGTCGGGCTG
GATGGCGTGTTTCGCACGGTGGTGGGCTTTCTTTGA
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