mRNA_S-firma_F_contig10515.722.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10515.722.1
Unique NamemRNA_S-firma_F_contig10515.722.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10515.722.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 4.220e-54
Identity = 95/127 (74.80%), Postives = 108/127 (85.04%), Query Frame = 1 
Query:    4 PPASSAHKYKIDVKERVVRADFSGSITSRIDPLDEAYVLRLFERPDVTVIIKGLAAGLDPDLWNTRFLAERCGEMMYHSFRRFVLPNGNSSGPFSPIPEREKAWSSMRLRDFVRYLDKRANALRSRA 384
            PPA++AHKY+ID+K R+VRADFS S  +RIDPLDEAYVL LFERPDVTV+I GLA GLDP LWNTR+L ERCGEMMYHSFRRF  P G   GPF PIP RE+AWSSMRLRD+VRYL+K A+A R+RA
Sbjct:   15 PPAATAHKYRIDMKNRLVRADFSKS-GARIDPLDEAYVLGLFERPDVTVVINGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPVREEAWSSMRLRDYVRYLNKLADAKRARA 140
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BLAST of mRNA_S-firma_F_contig10515.722.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.740e-18
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:    1 SPPASSAHKYKIDVKERVVRADFSGSITSRIDPLDEAYVLRLFERPDVTVIIKGLAAGLDPDLWNTRFLAERCGEMMYHSFRRFVLPNGNSSGPFSPIPEREKAWSSMRLRDFVRYLDKRANA 369
            SPP      Y  D   RVVR D SG  T  + P DEAY+ +L +RPD+TVII+GL+ GL P LW+  +L  RC ++M H  R F   + +S+         E  W SM +  +  YL+ RA A
Sbjct:  448 SPPQRGTAAYSFDELNRVVRCDVSG--TPVVHPDDEAYICQLLDRPDLTVIIRGLSDGLSPHLWSIPYLRSRCRDLMVHKLRCFRRRSPSSTESL------ETEWRSMPVHSYCNYLEARAAA 562
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BLAST of mRNA_S-firma_F_contig10515.722.1 vs. uniprot
Match: A0A7S2B8L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B8L6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.000e-17
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:   34 IDVKERVVRADFSGSITSRIDPLDEAYVLRLFERPDVTVIIKGLAAGLDPDLWNTRFLAERCGEMMYHSFRRFVLPNGNSSGPFSPIPEREKAWSSMRLRDFVRYLDKRANALR 375
            +D   RVVR D +G     +DP D+ Y+ RL ++PDVT+I+KGL  GL P LW+  +L  RCG++M H  R F    G+ +       E E  W SMRL D++ YL+ R  A R
Sbjct:    2 VDPVNRVVRMDMAGKPC--LDPDDDDYLHRLLDQPDVTLIVKGLGDGLTPHLWSEPYLKSRCGDLMLHKLRCF---RGSRNKCAQDSVETE--WKSMRLNDYMGYLEARQKAHR 108
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BLAST of mRNA_S-firma_F_contig10515.722.1 vs. uniprot
Match: A0A7S3ZG35_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZG35_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 1.210e-9
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:  148 VIIKGLAAGLDPDLWNTRFLAERCGEMMYHSFRRFVL-PNGNSSGPFSPIPEREKAWSSMRLRDFVRYLDKRANAL 372
            VIIKGL   L  +LWNT +L ++ G MMYH FRR+ L  + ++ G F    E EK W SM + D+ RYLD R   L
Sbjct:   18 VIIKGLGRRLSHELWNTPYLFQKLGPMMYHRFRRYCLVDSSHTQGGFEKRYE-EKDWLSMTIGDYQRYLDAREKML 92
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10515.722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCL4_ECTSI4.220e-5474.80ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A7S2SQY1_9STRA6.740e-1840.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2B8L6_9STRA2.000e-1742.11Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3ZG35_9EUKA1.210e-947.37Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10515contigS-firma_F_contig10515:306..3180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LCL4
PFAMsHelitron_like_N,PIF1
Max annot lvl2759|Eukaryota
KEGG koko:K15255
Evalue6.93e-55
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons4
Model size445
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10515.722.1prot_S-firma_F_contig10515.722.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10515 306..3178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.4826398-CDS-S-firma_F_contig10515:305..3911622815587.4826398-CDS-S-firma_F_contig10515:305..391Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10515 306..391 +
1696949436.4405107-CDS-S-firma_F_contig10515:305..3911696949436.4405107-CDS-S-firma_F_contig10515:305..391Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10515 306..391 +
1622815587.4984887-CDS-S-firma_F_contig10515:1951..20951622815587.4984887-CDS-S-firma_F_contig10515:1951..2095Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10515 1952..2095 +
1696949436.4506369-CDS-S-firma_F_contig10515:1951..20951696949436.4506369-CDS-S-firma_F_contig10515:1951..2095Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10515 1952..2095 +
1622815587.510323-CDS-S-firma_F_contig10515:2581..26951622815587.510323-CDS-S-firma_F_contig10515:2581..2695Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10515 2582..2695 +
1696949436.4604573-CDS-S-firma_F_contig10515:2581..26951696949436.4604573-CDS-S-firma_F_contig10515:2581..2695Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10515 2582..2695 +
1622815587.52265-CDS-S-firma_F_contig10515:3081..31781622815587.52265-CDS-S-firma_F_contig10515:3081..3178Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10515 3082..3178 +
1696949436.4689298-CDS-S-firma_F_contig10515:3081..31781696949436.4689298-CDS-S-firma_F_contig10515:3081..3178Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10515 3082..3178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10515.722.1

>prot_S-firma_F_contig10515.722.1 ID=prot_S-firma_F_contig10515.722.1|Name=mRNA_S-firma_F_contig10515.722.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=147bp
SPPASSAHKYKIDVKERVVRADFSGSITSRIDPLDEAYVLRLFERPDVTV
IIKGLAAGLDPDLWNTRFLAERCGEMMYHSFRRFVLPNGNSSGPFSPIPE
REKAWSSMRLRDFVRYLDKRANALRSRAAGAGATATTGNTSAAAAAA
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mRNA from alignment at S-firma_F_contig10515:306..3180+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10515.722.1 ID=mRNA_S-firma_F_contig10515.722.1|Name=mRNA_S-firma_F_contig10515.722.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2875bp|location=Sequence derived from alignment at S-firma_F_contig10515:306..3180+ (Sphaerotrichia firma ET2_F female)
AGCCCACCCGCTTCTAGCGCTCACAAGTACAAGATCGATGTGAAGGAGAG
GGTGGTTCGCGCCGACTTTTCCGGCAGCATCACCAGGTGTGTGTGTATGC
GGGGATGTTGCAGCGCGTGGAGCTGACCTCGATCCTCCAGCAGGACAAAG
TTTTCGGTGACATGAAGCGCTGTGATCTGGTGGGTCATACTGGGGGGAGC
GTCTGGAGTGTCATGGGCCTAGGGGGAGTGGTGAAAAATCGATGCACCGA
GTATTTCATTTTTTCTTTCAGCGGATCAGCGGCCGCAATTCGTTTGAACG
GATTCCCCCGCCCGCGTGCAGCGTATCTACACACATCTACACACGTGTTT
GGGCTCCTACTCCCTTCTCCACCTAAAGCTTGCGCCCTTCTCAGTATATC
TCTCGCGCTGTATGGTATCAATCCTTTCCTGCTGCTACCGCACAACGCAG
CCGAAGGGCTTGTTGAAGCAGGCCAGCCACCCCCCTTTCCATTTTTTTTG
GTGGGCACTCCAAAAATTTAAAAATCCATGATCTTCCTTTCGAATGACAA
ACGAACGACCCCTTTGGCCGTCAGGCACTCACGCAAAGAGAAGACACACA
TGTAAATTCCCGTTCTGTGGTGTCGGCGCGCACAGCAGTTTATCTTGGTT
TCATCCGCGTAAACCAAGCCTGGTGGTTCAAACAGCAAAAGATGGCCGCA
GGCACCTTGTAGCTTTCCCGATCCGCCGAGCCGAGGCGGCGGCGGGTTGC
TTTACTGCCAACTACAGCTGTACATCGGTGCAGTGATTTTCGGCTGATGA
AACGTCCTTTATTTTGTTGCGTACACATGTACTGTATGTCACTACCGCAA
GCATGTGTGCGCCGAAAAGGTGCCAGTGGGAACAATCAAGTCCTTGGGGC
TTCTCTCCACCGTGTTTTTGCTTTTTCTCCGCGGGTTTCCCACGCCGTTA
AATATTTACTCTAAATACCGCCGTAGCTTAGTCAACTGCCGTGGCACCCT
TTTTGAGAACCCCCCTCCCCCCGAGAGAGAACGCCCCGGGGCGATCTTTA
TTAGGTCATGTTTTCCTATCCCCCAACGGGGCTCATCACCCACGGGTTGT
TGTTTGTGTCCCAACAGCATGCTGTGTTTATGTTGTTGGAGGCGATGTTG
GTAGTACCGCTCTTCTGAAGAGTGTTGTCAACAGTTGGTGTGCGCTTGCT
CGGTATCCGACATCGTGGCAGTGTGTGTGTGAAGAAAAACACACACATGA
ACGCCCCCGGGGACTTTTTGCCCCGGGGCGATTTGTCTTTGTGCAAAGTA
TCCCCCCCCCCCCTACCTTTGAGAACGCCCTGGGGCGCTCTTCTTGGCAA
GATATTTTCGATCGCCCGCCGGGGCGTTACCAAGGGATACTACGGTAGTC
TAGTACTCGGCACCCTGGCATCCGTAGTGTTTCCTTCTCTGGCCAGCCTG
TGGTTTGTTTGCCTTTTTTTTTTTTTTTCTCGTGTGTCCCAGCCTGCGGT
TACCGTTTGTTTGAAACAATCGTTGCGCAAAACGGGATGTTCGCGAGGTG
TTATCTTGGTCCAATATCCTTCCGTGCCCGGACTGCTCCACATACAACGC
CTATTCAGTTTAGTGGTTGTTGACTCTTGCTTTCACGTCGCGGCAGCAGG
ATAGACCCGCTGGACGAGGCGTACGTGCTGAGGCTGTTCGAGCGGCCCGA
TGTCACGGTCATCATCAAGGGCCTGGCCGCCGGCCTCGACCCGGACCTGT
GGAACACCCGCTTCCTCGCCGAGCGGTGCGGGGAGATGATGTGAGTCGTC
TGTTGCTGTCGTCGTACTCGGTTGTCGTCGTTGTTGTCGTCGGCGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGGTGGTGGTGGTGGTGTTGGCGGATGTAGAACAGAGAGCAAGTCCT
CGCCGCCCCGACCGTTGACGCGGCGGGGAGGTGAAAGGCGAACGGTGTGT
GGCGATTTCAGTTTTTTTTTTTTGTGCGTGTAGTGCCCTCCAGCTGATCG
TTTGCGCCTTAGCCTTGCAGCGGACGCAGCAGTATCACCAGAAACATTTC
CCGCCACATGGCATTATGAGATGAGGCATAGCTGCTTTAGGCTCGTTGGG
TTTTCTGCTGTTGCTGGTGTATTCGACACCCGTCCACTTTCTGCTTTTGT
CGCAAGTGGCTCACCTCTCCTCAGTCTCTTTTTCCACACCCGGTATTGGC
GAAACCGAAAACACTGGTTTCAACAGGTACCACAGCTTCCGGCGGTTCGT
TCTGCCGAACGGGAACTCCTCGGGGCCGTTCTCCCCGATCCCCGAGAGGG
AGAAGGCTTGGTCGTCCATGCGGCTGCGCGATTTCGTGAGGTGAGGCTTG
GTTGAGGCAGCAGGCGTGCCCTGCTCTCTGGGCAACCCTCAGGCACGCCT
GCAGAAAATCCGAAAAACATATGACCACCCCTCAACCAGGCACACATTTT
TTCCCGGTAAGTTTGGACTTAGCATGCTCCTACCCGCCGCAAAAGTCAGT
CAAGACACAGCAGATTTTCCCAATCGAACGCGCATCACTCGGCGTCCAGC
ATGAAGATGCAGCGCAAGAGTCCAACCAATGCCCGCCTACGTAGTAACTC
GCTCCTCGCGATGAACACGTCGAGCGCTGCATCCCCCGTCCCCCGACCCG
ACCCAACCCAACCCAACCCAACCCCCGACGGCGATCATGATGGTGATCAT
GCGATCATGATGGTGATCATGATCAGATACCTGGACAAGCGGGCGAACGC
GCTGCGAAGCAGGGCTGCCGGCGCGGGCGCCACCGCAACAACCGGCAACA
CGTCGGCGGCGGCAGCGGCAGCGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10515:306..3180+

>mRNA_S-firma_F_contig10515.722.1 ID=mRNA_S-firma_F_contig10515.722.1|Name=mRNA_S-firma_F_contig10515.722.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=882bp|location=Sequence derived from alignment at S-firma_F_contig10515:306..3180+ (Sphaerotrichia firma ET2_F female)
AGCCCACCCGCTTCTAGCGCTCACAAGTACAAGATCGATGTGAAGGAGAG
GGTGGTTCGCGCCGACTTTTCCGGCAGCATCACCAGAGCCCACCCGCTTC
TAGCGCTCACAAGTACAAGATCGATGTGAAGGAGAGGGTGGTTCGCGCCG
ACTTTTCCGGCAGCATCACCAGCAGGATAGACCCGCTGGACGAGGCGTAC
GTGCTGAGGCTGTTCGAGCGGCCCGATGTCACGGTCATCATCAAGGGCCT
GGCCGCCGGCCTCGACCCGGACCTGTGGAACACCCGCTTCCTCGCCGAGC
GGTGCGGGGAGATGATCAGGATAGACCCGCTGGACGAGGCGTACGTGCTG
AGGCTGTTCGAGCGGCCCGATGTCACGGTCATCATCAAGGGCCTGGCCGC
CGGCCTCGACCCGGACCTGTGGAACACCCGCTTCCTCGCCGAGCGGTGCG
GGGAGATGATGTACCACAGCTTCCGGCGGTTCGTTCTGCCGAACGGGAAC
TCCTCGGGGCCGTTCTCCCCGATCCCCGAGAGGGAGAAGGCTTGGTCGTC
CATGCGGCTGCGCGATTTCGTGAGGTACCACAGCTTCCGGCGGTTCGTTC
TGCCGAACGGGAACTCCTCGGGGCCGTTCTCCCCGATCCCCGAGAGGGAG
AAGGCTTGGTCGTCCATGCGGCTGCGCGATTTCGTGAGATACCTGGACAA
GCGGGCGAACGCGCTGCGAAGCAGGGCTGCCGGCGCGGGCGCCACCGCAA
CAACCGGCAACACGTCGGCGGCGGCAGCGGCAGCGATACCTGGACAAGCG
GGCGAACGCGCTGCGAAGCAGGGCTGCCGGCGCGGGCGCCACCGCAACAA
CCGGCAACACGTCGGCGGCGGCAGCGGCAGCG
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