mRNA_S-firma_F_contig10513.720.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10513.720.1
Unique NamemRNA_S-firma_F_contig10513.720.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: A0A5A8CF49_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CF49_CAFRO)

HSP 1 Score: 77.0 bits (188), Expect = 2.560e-16
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 3 
Query:   15 KKMSAPLSRFSSHWRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEGVEQ 203
            K MS   SRFSS WR +G+NYLEMITV+S ++R+ +KEP+RTEAL ++++A+R   F  GVEQ
Sbjct:   31 KTMSGAPSRFSSFWRRSGLNYLEMITVASTSMRQCLKEPLRTEALGRTSYAFREFKFENGVEQ 93
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BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: A0A5A8DPQ8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DPQ8_CAFRO)

HSP 1 Score: 77.0 bits (188), Expect = 2.770e-16
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 3 
Query:   15 KKMSAPLSRFSSHWRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEGVEQ 203
            K MS   SRFSS WR +G+NYLEMITV+S ++R+ +KEP+RTEAL ++++A+R   F  GVEQ
Sbjct:   34 KTMSGAPSRFSSFWRRSGLNYLEMITVASTSMRQCLKEPLRTEALGRTSYAFREFKFENGVEQ 96
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BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: A9PDH8_POPTR (Uncharacterized protein n=6 Tax=Saliceae TaxID=238069 RepID=A9PDH8_POPTR)

HSP 1 Score: 51.2 bits (121), Expect = 1.390e-6
Identity = 22/61 (36.07%), Postives = 35/61 (57.38%), Query Frame = 3 
Query:   54 WRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEGVEQEAVMLDQGGVQ 236
            WR AGM Y+    + +N +R  +KEP +TEALS+    + +T F +G  Q+ V+    G +
Sbjct:   10 WRAAGMTYITYSNICANLVRNCLKEPYKTEALSREKVHFAVTKFVDGNPQKPVVRSDSGTE 70
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BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: A0A5N5LM92_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5LM92_9ROSI)

HSP 1 Score: 51.2 bits (121), Expect = 5.840e-6
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 3 
Query:   54 WRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEGVEQEAVMLDQG 227
            WR AGM Y+    + +N +R  +KEP +TEALS+    + +T FA+G  Q+  +L  G
Sbjct:   10 WRAAGMTYITYSNICANLVRNCLKEPYKTEALSREKVQFAVTKFADGNPQKPKILYHG 67
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BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: A0A8B8KM02_ABRPR (ATP synthase subunit epsilon, mitochondrial n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8KM02_ABRPR)

HSP 1 Score: 48.1 bits (113), Expect = 2.390e-5
Identity = 20/51 (39.22%), Postives = 33/51 (64.71%), Query Frame = 3 
Query:   54 WRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEGVEQE 206
            WR AGM Y+   T+ +N +R  +KEP++TEALS+    + L+ + +G  Q+
Sbjct:   13 WRAAGMTYVTYSTICANLVRNCLKEPLKTEALSREKVYFSLSKWVDGKPQK 63
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BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: M1VEK3_CYAM1 (Mitochondrial F-type ATPase F1 subunit epsilon n=2 Tax=cellular organisms TaxID=131567 RepID=M1VEK3_CYAM1)

HSP 1 Score: 48.1 bits (113), Expect = 2.990e-5
Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = 3 
Query:   51 HWRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEGVEQEAVMLD 221
            +WR+AG++YL+   V +  +RRV+KEP RT+ALS++ ++     + +G     V L+
Sbjct:    4 YWRVAGLSYLQYANVCAEYVRRVLKEPERTKALSRAGYSMIKATWKDGKVASRVTLE 60
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BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: M2XSR0_GALSU (F-type H+-transporting ATPase subunit epsilon n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSR0_GALSU)

HSP 1 Score: 47.4 bits (111), Expect = 4.770e-5
Identity = 19/47 (40.43%), Postives = 32/47 (68.09%), Query Frame = 3 
Query:   54 WRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEG 194
            WR AG+ YL    + ++ +R+ +KEP RTEALS++ F    ++++EG
Sbjct:    5 WRAAGLTYLRYANICADFVRKALKEPKRTEALSRTTFEMTKSEWSEG 51
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BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: A0A6J1JZ99_CUCMA (ATP synthase subunit epsilon, mitochondrial n=6 Tax=fabids TaxID=91835 RepID=A0A6J1JZ99_CUCMA)

HSP 1 Score: 47.0 bits (110), Expect = 6.300e-5
Identity = 18/54 (33.33%), Postives = 34/54 (62.96%), Query Frame = 3 
Query:   54 WRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEGVEQEAVM 215
            WR AGM Y+    + +N +R  +KEP++TE LS+    + ++ +A+G  Q+ ++
Sbjct:   10 WRAAGMTYITYSNICANLVRNCLKEPLKTEVLSREKVHFSISKWADGKPQKPII 63
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BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: A0A6N2LCX9_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2LCX9_SALVM)

HSP 1 Score: 47.8 bits (112), Expect = 7.560e-5
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 3 
Query:   54 WRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEGVEQE 206
            WR AGM Y+    + +N +R  +KEP +TEALS+    + +T F +G  Q+
Sbjct:   10 WRAAGMTYITYSNICANLVRNCLKEPFKTEALSREKVHFSVTKFVDGNPQK 60
[Close]
BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Match: A0A3N7FC01_POPTR (Uncharacterized protein n=1 Tax=Populus trichocarpa TaxID=3694 RepID=A0A3N7FC01_POPTR)

HSP 1 Score: 47.4 bits (111), Expect = 7.880e-5
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 3 
Query:   54 WRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAYRLTDFAEGVEQE 206
            WR AGM Y+    + +N +R  +KEP +TEALS+    + +T F +G  Q+
Sbjct:   10 WRAAGMTYITYSNICANLVRNCLKEPYKTEALSREKVHFAVTKFVDGNPQK 60
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10513.720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A5A8CF49_CAFRO2.560e-1657.14Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DPQ8_CAFRO2.770e-1657.14Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A9PDH8_POPTR1.390e-636.07Uncharacterized protein n=6 Tax=Saliceae TaxID=238... [more]
A0A5N5LM92_9ROSI5.840e-639.66Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A8B8KM02_ABRPR2.390e-539.22ATP synthase subunit epsilon, mitochondrial n=1 Ta... [more]
M1VEK3_CYAM12.990e-536.84Mitochondrial F-type ATPase F1 subunit epsilon n=2... [more]
M2XSR0_GALSU4.770e-540.43F-type H+-transporting ATPase subunit epsilon n=1 ... [more]
A0A6J1JZ99_CUCMA6.300e-533.33ATP synthase subunit epsilon, mitochondrial n=6 Ta... [more]
A0A6N2LCX9_SALVM7.560e-539.22Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
A0A3N7FC01_POPTR7.880e-539.22Uncharacterized protein n=1 Tax=Populus trichocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10513contigS-firma_F_contig10513:378..733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog3694.POPTR_0010s25640.1
PFAMsATP-synt_Eps
Max annot lvl35493|Streptophyta
KEGG koko:K02135
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0098796,GO:0098798,GO:0098800
Evalue1.23e-07
EggNOG OGsKOG3495@1|root,KOG3495@2759|Eukaryota,37W9H@33090|Viridiplantae,3GK5A@35493|Streptophyta,4JQGF@91835|fabids
DescriptionATP synthase subunit epsilon
COG categoryC
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10513.720.1prot_S-firma_F_contig10513.720.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10513 414..713 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.3059893-UTR-S-firma_F_contig10513:377..4131622815587.3059893-UTR-S-firma_F_contig10513:377..413Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10513 378..413 -
1696949436.3129885-UTR-S-firma_F_contig10513:377..4131696949436.3129885-UTR-S-firma_F_contig10513:377..413Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10513 378..413 -
1622815587.3383112-UTR-S-firma_F_contig10513:713..7331622815587.3383112-UTR-S-firma_F_contig10513:713..733Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10513 714..733 -
1696949436.3511767-UTR-S-firma_F_contig10513:713..7331696949436.3511767-UTR-S-firma_F_contig10513:713..733Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10513 714..733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.3178809-CDS-S-firma_F_contig10513:413..5211622815587.3178809-CDS-S-firma_F_contig10513:413..521Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10513 414..521 -
1696949436.3304203-CDS-S-firma_F_contig10513:413..5211696949436.3304203-CDS-S-firma_F_contig10513:413..521Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10513 414..521 -
1622815587.3281753-CDS-S-firma_F_contig10513:590..7131622815587.3281753-CDS-S-firma_F_contig10513:590..713Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10513 591..713 -
1696949436.3387034-CDS-S-firma_F_contig10513:590..7131696949436.3387034-CDS-S-firma_F_contig10513:590..713Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10513 591..713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10513.720.1

>prot_S-firma_F_contig10513.720.1 ID=prot_S-firma_F_contig10513.720.1|Name=mRNA_S-firma_F_contig10513.720.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=77bp
MSAPLSRFSSHWRIAGMNYLEMITVSSNALRRVMKEPMRTEALSKSAFAY
RLTDFAEGVEQEAVMLDQGGVQRLEA*
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mRNA from alignment at S-firma_F_contig10513:378..733-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10513.720.1 ID=mRNA_S-firma_F_contig10513.720.1|Name=mRNA_S-firma_F_contig10513.720.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=356bp|location=Sequence derived from alignment at S-firma_F_contig10513:378..733- (Sphaerotrichia firma ET2_F female)
AGGTTGTGTGTGAGAAGAAAATGTCCGCCCCCCTGTCCCGCTTCTCCTCG
CACTGGCGCATTGCCGGCATGAACTACCTGGAGATGATCACGGTGTCCTC
CAACGCCCTGCGCCGCGTCATGAAGGAGCCCATGCGCACGGAGGTGTGTG
TGTGTGTGTGTGTGTAGCGAACACGTTTGTGCATCCTGAGTTCACCTCCA
CCCGCCCCCAAGGCCCTGTCCAAGTCCGCGTTCGCGTACCGCTTGACGGA
CTTTGCGGAGGGCGTGGAGCAGGAGGCAGTGATGCTTGACCAGGGCGGCG
TCCAGCGCCTGGAGGCGTAGGCCCCTTTATCCTTTTTTTGTCAAACAAAT
GGCTGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10513:378..733-

>mRNA_S-firma_F_contig10513.720.1 ID=mRNA_S-firma_F_contig10513.720.1|Name=mRNA_S-firma_F_contig10513.720.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=462bp|location=Sequence derived from alignment at S-firma_F_contig10513:378..733- (Sphaerotrichia firma ET2_F female)
ATGTCCGCCCCCCTGTCCCGCTTCTCCTCGCACTGGCGCATTGCCGGCAT
GAACTACCTGGAGATGATCACGGTGTCCTCCAACGCCCTGCGCCGCGTCA
TGAAGGAGCCCATGCGCACGGAGATGTCCGCCCCCCTGTCCCGCTTCTCC
TCGCACTGGCGCATTGCCGGCATGAACTACCTGGAGATGATCACGGTGTC
CTCCAACGCCCTGCGCCGCGTCATGAAGGAGCCCATGCGCACGGAGGCCC
TGTCCAAGTCCGCGTTCGCGTACCGCTTGACGGACTTTGCGGAGGGCGTG
GAGCAGGAGGCAGTGATGCTTGACCAGGGCGGCGTCCAGCGCCTGGAGGC
GTAGGCCCTGTCCAAGTCCGCGTTCGCGTACCGCTTGACGGACTTTGCGG
AGGGCGTGGAGCAGGAGGCAGTGATGCTTGACCAGGGCGGCGTCCAGCGC
CTGGAGGCGTAG
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