mRNA_S-firma_F_contig10512.719.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10512.719.1
Unique NamemRNA_S-firma_F_contig10512.719.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10512.719.1 vs. uniprot
Match: A0A6H5K1Q4_9PHAE (Protein xylosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q4_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 3.340e-64
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 3 
Query:    3 SDGDLELGEGGTGFLKSTRGTVSDRAPSCSIMSLVGACLDLLGEAKGYGSPAIAFKCHNRWNQFFSFGEGPLEGHLLSTVPSHLTMADDLAGGELCLEGVDEGARGIVLKTAECSPDRSAQKFNAVQMEPP 395
            SDGDLELGEGG G++KS RG++S RAPSCSIMSLVG+CLDLLGEAKGYG+PAIA+KCHNRWNQFFSFGEG LEGHLLS VP HL MADDL  G LCLE VDEG+ GIV+KTAECSPDR AQKF+ VQ++PP
Sbjct:  381 SDGDLELGEGGNGYMKSARGSMSGRAPSCSIMSLVGSCLDLLGEAKGYGAPAIAYKCHNRWNQFFSFGEGELEGHLLSIVPRHLHMADDLTEGALCLESVDEGSGGIVIKTAECSPDRPAQKFSLVQVQPP 511
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10512.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1Q4_9PHAE3.340e-6480.15Protein xylosyltransferase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10512contigS-firma_F_contig10512:53..4016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1264
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10512.719.1prot_S-firma_F_contig10512.719.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10512 955..3216 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.180086-UTR-S-firma_F_contig10512:52..1021622815587.180086-UTR-S-firma_F_contig10512:52..102Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10512 53..102 +
1696949436.2149308-UTR-S-firma_F_contig10512:52..1021696949436.2149308-UTR-S-firma_F_contig10512:52..102Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10512 53..102 +
1622815587.1903913-UTR-S-firma_F_contig10512:909..9541622815587.1903913-UTR-S-firma_F_contig10512:909..954Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10512 910..954 +
1696949436.2247496-UTR-S-firma_F_contig10512:909..9541696949436.2247496-UTR-S-firma_F_contig10512:909..954Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10512 910..954 +
1622815587.271355-UTR-S-firma_F_contig10512:3216..40161622815587.271355-UTR-S-firma_F_contig10512:3216..4016Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10512 3217..4016 +
1696949436.302022-UTR-S-firma_F_contig10512:3216..40161696949436.302022-UTR-S-firma_F_contig10512:3216..4016Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10512 3217..4016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.201619-CDS-S-firma_F_contig10512:954..10281622815587.201619-CDS-S-firma_F_contig10512:954..1028Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 955..1028 +
1696949436.2373316-CDS-S-firma_F_contig10512:954..10281696949436.2373316-CDS-S-firma_F_contig10512:954..1028Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 955..1028 +
1622815587.2169483-CDS-S-firma_F_contig10512:1536..16631622815587.2169483-CDS-S-firma_F_contig10512:1536..1663Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 1537..1663 +
1696949436.2538006-CDS-S-firma_F_contig10512:1536..16631696949436.2538006-CDS-S-firma_F_contig10512:1536..1663Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 1537..1663 +
1622815587.2327023-CDS-S-firma_F_contig10512:1974..20331622815587.2327023-CDS-S-firma_F_contig10512:1974..2033Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 1975..2033 +
1696949436.2658033-CDS-S-firma_F_contig10512:1974..20331696949436.2658033-CDS-S-firma_F_contig10512:1974..2033Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 1975..2033 +
1622815587.2454846-CDS-S-firma_F_contig10512:2710..28061622815587.2454846-CDS-S-firma_F_contig10512:2710..2806Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 2711..2806 +
1696949436.2803516-CDS-S-firma_F_contig10512:2710..28061696949436.2803516-CDS-S-firma_F_contig10512:2710..2806Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 2711..2806 +
1622815587.2588227-CDS-S-firma_F_contig10512:3203..32161622815587.2588227-CDS-S-firma_F_contig10512:3203..3216Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 3204..3216 +
1696949436.291705-CDS-S-firma_F_contig10512:3203..32161696949436.291705-CDS-S-firma_F_contig10512:3203..3216Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10512 3204..3216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10512.719.1

>prot_S-firma_F_contig10512.719.1 ID=prot_S-firma_F_contig10512.719.1|Name=mRNA_S-firma_F_contig10512.719.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=123bp
MSLVGACLDLLGEAKGYGSPAIAFKCHNRWNQFFSFGEGPLEGHLLSTVP
SHLTMADDLAGGELCLEGVDEGARGIVLKTAECSPDRSAQKFNAVQMEPP
PRPAPKPKIKIKKPTAPTSDEL*
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mRNA from alignment at S-firma_F_contig10512:53..4016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10512.719.1 ID=mRNA_S-firma_F_contig10512.719.1|Name=mRNA_S-firma_F_contig10512.719.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3964bp|location=Sequence derived from alignment at S-firma_F_contig10512:53..4016+ (Sphaerotrichia firma ET2_F female)
GTTCTGACGGCGACCTGGAGCTTGGCGAGGGCGGAACGGGTTTTTTGAAG
GTCAGAAGGCTCGCAGATTTACTTTCGTTCTTGTTTCGGTCCTTGTTTCG
TTTGTCGTGTATGGTGAAAATAGCTCGGATTGATCATGTGTGGAGAATGG
CAAATGAAAACATGGTGAGGTTGAGGCAAAGGTGGAGGTGAGTACGGACA
TGTTGGTTTGTCCGACGTGTGGAGGAGGTGGTTGTCTGAAAACCCTCCGC
AAGCACTTTTCCGAAGCCAGTTCTCCAGAGTAGGGCATGAAACCTACTCC
TCTCTTTTCGTCGTCCCCAAAATCGGCCCCCAGCAACGACCACCACCACC
GTGCGCAAAATCAATCACGATTTCAACCAATGTCCCCTCATCACCACCAT
CACCACTGCCATCCCCCCCCACGCCCTACCGCTTTTCAATGTTGTTGCGA
GACTCGTGAATACTTGAATTTTTAAATTTGTACGCATTTTCGAGGAAATC
TCATCGACGGGTCCGACGCTTAGGAAAGCACGCTAAAAGCCGGCATCTTT
TCGTTGGTCAACCGGTCAGCGTTGGTTTTTTCAGCTAAGAACACGTACAC
ACACACTCACACGAACCCTTACTAAGGAATCCCAACAATTAGGAAGGTGT
GTTTACGTTTTTACCCCGCTGAAGGCTGACGTCTTTTCCATGGTCAACCG
GTTAGCCTGGGCGGTGCTATGTAAGAAAACACACACACACACACACACAC
ACACACACGAACGGCACATGCTGCTGCACCCTCCCCCCTCCCATCGGACT
AGCACGTTCCACTTACAACCTTCTTTCCGACACACACGCGCACGCACGCA
CCCGCAGTCGACAAGAGGTACTGTGTCGGACCGCGCTCCATCGTGCTCCA
TAATGAGCTTGGTCGGGGCTTGCCTGGACCTGCTGGGGGAGGCCAAGGGG
TACGGATCTCCCGCCATCGCCTTCAAGTGAGTCATGTGCCGCAGTGTAGG
AGGGATGTAGTTTTTGAGCCTCCTTCTCAGCTCCGAAAGGTTGGCCGAAT
AGGTTGAGATCAACCCCGGGTTGTGTTTTGTCGCGAACGCAATATTGTCC
GCTCCCTCACATCAGTTTGTTGGGATGAAGGCCGTGATAAATACAAGGGC
GTGTGCGGTATGTTGGCAGGCAGATGCAAGAGATGTGTACCAGTGCGTGC
AGCCTTTGGGTTTGGGCAGTGCACGCAACAAGAGCCGCCGAAGGCGGTGG
TGTTTATTTGTGTACGTTTATTTCGCAGCGGCTTCATTGTTTGACCGCAC
CTCTTTCTGCCGCTTTCCGCAACTCCGGAGCACAGCACATGATGGGCCAG
TACCCATTGCACCCCCGTTGATGCAGCCGATGGAATCAGTCAGAGCTATT
CTTTGTTCCAGCGTGGTGAACCAATCTATTGCCAATGCTCCTAACCTAGT
GCGCGACACACACGAAACCCACGTTGACGCGCAGGTGCCACAACCGGTGG
AACCAGTTCTTCAGCTTTGGGGAGGGCCCGCTTGAGGGGCACTTGCTCTC
CACTGTGCCGAGCCATCTCACCATGGCGGATGACCTCGCGGGAGGAGAGC
TTTGCCTCGAGGTGACTTGGCGCCGCGTTTGTTCGAAGAATGGTGCCTGT
TGTGATTGGTTTTGGTTGTGGCGGTCTTGGGGTGCTGTTGGTGCTGCTCT
GCGAGGTATGGTAGACGTGGTGGCGGCAGGTCGGTTGTTGTTTCTCGAGC
AGACGAGCCTTGCGTTTTGGCCGTTGTCTCGGTGTTTTCTCACCTTGATC
ATCCAAGAGACTTGACAAGCTAGCACGGTGGTGGAGCCCCTTGCATCCCT
TGTCCCCAGCCTTTTTGTCTGAAAGCTCTCTCTCTCTCTCTCTCTCTCTT
TGTGTTGTTTGTGTTCTGCCAGGGTGTGGACGAGGGCGCGAGAGGCATCG
TCCTCAAGACCGCCGAGTGCTCTCCTGACAGGTGCGTGCGGTACACAGCA
ATTCTTGAAGTCTTCGGAGCTGTGGTTCTCTGTGTTTCTCAGAGCTGACC
GCATCACGTGCCCTTGTTGGAGACGATGGGAGTCTTTTTCGACGCGAATT
AATCTTGTTTTGTACGTGATGTCTTGTGGCCACATACATGTAGCGGATCA
AACATGATTAACGTGGTCACGTCTCCCAAGACTCTGACCTTATAGAAAGC
CGACAGATAGTGAGTGCGACTACTAAATACTGCTGTAGGACACGAGTATT
AGCTGTCGTCTCTGCGCAACACGCAACGACTGCTTGAACTGTGGAAAGGT
GATTCCCGATTTATTTTGTAAATTTATCTACTTCGAGGTGTTTTTTTTTC
GCGACCTCAAACGCGCCTGAATGGCGGGTCAACAAAACCACCACGCTGAA
AAGTCAAATAGCCCACCCGTGTGCGGCCCTTCGCTCCTCCGTCTCCGGTA
CCACCTTCAGCGAACACTCTGCTGCTTTCACCCGGTTATGTCAAAGTTTG
TGGAGCCCGTTTCTTTGCCTTTTTTCTGTTAACTTGCGCTCACTGCGTCC
GATGATCCCTCCCGCGTCCCCCCGCGTCATTGTTTGTTCGTCTATTCGTT
GATGTGATGGTGCCGCGTTCTCTCTCCTCTTGGTTGTCGGGACGCAAATT
GAGAGCAGATCGGCACAGAAGTTTAACGCTGTACAGATGGAGCCTCCTCC
GCGACCGGCACCGAAGCCCAAGATCAAGATCAAGAAACCAACGGCTCCCA
CCAGGTGAGATAAAAGTATGTGGCACTTTCGAGACACTCGTCATTGGTAC
TAAACGCTTGGTGAAATGACCGTGGGAGATGGGTTTCCAACGCAAAAGAG
TATTTGTTGATTTCTAGCAACGAATTTTTGTGGACTGTAAGCGACGAACG
ACAATGACACACAGCAGGGTTTCAGACAAGGACGGCTATCGTTCTGCCGC
CGTATTTTGCCTGCTTTATTTACCAACGGCCTATTGCTATCATAGCGCGT
CCATGCGCGAGGGCCCTGCTAAATTTCTACCCCCCCCCCTTTGCCCCACG
GTGCCCCTCTTGCTCCCGTCCGAATCCGTTCCTTTTGTCTCCGTCTCCTC
GTCCTGGCGACCCCTTCATTTTCTGCTTTCGCGCGCGCGCAACGTTTCAA
GCGACGAGTTGTAAGGCCGCAACATATCTAGTACTGCTGGAGTATCTGGT
ACAGTTTGAATCGCGTGGCTCGAGTTGTCGAGTGTGAACATTTAAGTTCC
GGTGTTTTCCTGTCGTTTTCGTTCGTTTCGTGTGTGTCCCGAGATGTAGT
CTAGCTTCTTTGTGCGTGTTGTGAGTTGTTCGCCCCTTGGAGGCTCTCTT
GGTTAATTCTGAGCGTTTTTTGCCGGGCTGTTGTTTTTTACGAGGTACAG
CTGTCGCTCCTGCCCCGCGCGCACGGGGGGTGGGTGTGTTGTGGTCGTCT
TCTTTGTCGTTTCTACCTCTCAGATTCACGATCCTCTGCGAGGTAGAACC
TAGGAAGAAGTACTGGTACGCAACAAGCCCCCCCCCCCTCCCTAGAGGGC
ACGACAACGCTTAGGCCACCCCGCCGTCTTTTCTGCGGGGGATGACGGAG
ACTCTCGTGTATTGGGTGTTGTGTGTGTGGTCGGAAGAATTTTCAGACCG
GCTAGGTGGTGGCCCGTGACTCGATAAATCGTCTACGCAGGAAAAACAAC
CAAAGGGAAAGTAAACAACAGCTTGTTGGCTGGCTGACTGGCCGATTTTC
TCTCCGCGACAACCGTACGAGTTTATTTTCCGCCGCTCGTCTCTCTTGCC
GCGATAAGACTATTGACTAGCGCCTGGTTGTTTGCAACATTCGGTTCAAT
GGTAGTTCTGCTTTTTTCGCTCACCCGACAACGAAACTGGCGATTGTCTG
ACCAAAGAGAGTGTTATTGGCGCGTAAACCCTATCATCAGCAAAGGACTA
TAAGAGATGATCAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10512:53..4016+

>mRNA_S-firma_F_contig10512.719.1 ID=mRNA_S-firma_F_contig10512.719.1|Name=mRNA_S-firma_F_contig10512.719.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=738bp|location=Sequence derived from alignment at S-firma_F_contig10512:53..4016+ (Sphaerotrichia firma ET2_F female)
ATGAGCTTGGTCGGGGCTTGCCTGGACCTGCTGGGGGAGGCCAAGGGGTA
CGGATCTCCCGCCATCGCCTTCAAATGAGCTTGGTCGGGGCTTGCCTGGA
CCTGCTGGGGGAGGCCAAGGGGTACGGATCTCCCGCCATCGCCTTCAAGT
GCCACAACCGGTGGAACCAGTTCTTCAGCTTTGGGGAGGGCCCGCTTGAG
GGGCACTTGCTCTCCACTGTGCCGAGCCATCTCACCATGGCGGATGACCT
CGCGGGAGGAGAGCTTTGCCTCGAGGTGCCACAACCGGTGGAACCAGTTC
TTCAGCTTTGGGGAGGGCCCGCTTGAGGGGCACTTGCTCTCCACTGTGCC
GAGCCATCTCACCATGGCGGATGACCTCGCGGGAGGAGAGCTTTGCCTCG
AGGGTGTGGACGAGGGCGCGAGAGGCATCGTCCTCAAGACCGCCGAGTGC
TCTCCTGACAGGGTGTGGACGAGGGCGCGAGAGGCATCGTCCTCAAGACC
GCCGAGTGCTCTCCTGACAGATCGGCACAGAAGTTTAACGCTGTACAGAT
GGAGCCTCCTCCGCGACCGGCACCGAAGCCCAAGATCAAGATCAAGAAAC
CAACGGCTCCCACCAGATCGGCACAGAAGTTTAACGCTGTACAGATGGAG
CCTCCTCCGCGACCGGCACCGAAGCCCAAGATCAAGATCAAGAAACCAAC
GGCTCCCACCAGCGACGAGTTGTAACGACGAGTTGTAA
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