mRNA_S-firma_F_contig10510.715.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10510.715.1
Unique NamemRNA_S-firma_F_contig10510.715.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 5.980e-132
Identity = 209/221 (94.57%), Postives = 212/221 (95.93%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPLFVGGEE-AAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
            IV+ATPGRLCE+VFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATP GRRQAVFASATGRSPVVS ASERYMREEPLFVGG +   G GQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFP SVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRI MVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR
Sbjct:  958 IVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPRGRRQAVFASATGRSPVVSAASERYMREEPLFVGGGDLGVGSGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPESVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 1178          
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA)

HSP 1 Score: 286 bits (732), Expect = 1.640e-85
Identity = 140/220 (63.64%), Postives = 175/220 (79.55%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGR-RQAVFASATGRSPVVSTASERYMREEPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAG 657
            +++ TPGR+CE+  +++R+KL  V+ VVLDEVD L+RPPYD+EID I+        RQ V+ASATGRSP V  A+ ++M+E   +V G + AG      GLP NI+HTI+T PKV+KF++LRRL++TQPFP SVM+FVNDP QV WLTE+LETVGIIAAPLSGES K++R EIM+RL D R+ MVVTTEMAARG+DV  LTHVVNYDLPTDA+HYVHRAG
Sbjct:  662 VLIGTPGRVCELALEKKRVKLANVKFVVLDEVDTLMRPPYDEEIDQIIGTMRSSEYRQTVYASATGRSPTVERAAAKHMKEGYTYVVGNDNAGAD----GLPPNIKHTIITSPKVRKFESLRRLMHTQPFPESVMVFVNDPHQVRWLTEKLETVGIIAAPLSGESVKEERTEIMKRLTDGRLAMVVTTEMAARGIDVPQLTHVVNYDLPTDAEHYVHRAG 877          
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A7S2XV29_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV29_9STRA)

HSP 1 Score: 211 bits (537), Expect = 5.890e-62
Identity = 110/220 (50.00%), Postives = 148/220 (67.27%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
            +VV TPGRL ++V +  R+++G     VLDEVD LL   +  E+D +M      ++Q VFASATGRS  V  A   +M  + +FVGG     G +R   LP N+ HT ++     + D +RRL++ +P P  +++F ND  +V  L E+L  +GI+AAPLSGESSKDDR E +RRLQ  +I ++V+TE+AARGLDV  LTHVVNYDLPTDA+HYVHRAGR
Sbjct:  272 VVVGTPGRLADLVIEYGRLRVGHATVAVLDEVDMLLESQFRGEVDHLMQKF-NSQKQVVFASATGRSEAVEAAMADFM-VDGVFVGG--TGSGSERAQALPPNVAHTFISCRPDLRLDNIRRLISVEPAPEGILVFTNDQHKVQILLEKLLDLGIVAAPLSGESSKDDRKEAVRRLQKGQISVLVSTELAARGLDVPQLTHVVNYDLPTDAEHYVHRAGR 487          
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A0G4F225_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F225_VITBC)

HSP 1 Score: 198 bits (504), Expect = 1.480e-55
Identity = 107/226 (47.35%), Postives = 148/226 (65.49%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGG----RRQAVFASATGRSPVVSTASERYMRE--EPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
            +VV TPGRL + V DRR++ L  V+ +VLDEVD L+R PY+ +++++M   P G     RQ +FASATG    V+ A++RYMR     +  GG + +  G     +P NI H  + + + K  + LR+ L+T P    V+ F N   +V WL + L    IIAAPLSG +SKDDRAE+ +R+Q+ +IGM V+TE+ ARGLDV  L+HVVN DLPTDA+HY+HRAGR
Sbjct:  508 VVVGTPGRLYDFVLDRRKVDLSRVKYLVLDEVDQLIRDPYEGQLESLMATIPKGTHSTHRQTIFASATGAQKSVTQAAKRYMRPVWHVIRPGGVKHSDEGVPL--IPPNIHHIFMCVREDKVTEALRKFLHTDPVDKRVLCFCNKQGRVKWLVDHLLQKQIIAAPLSGFTSKDDRAEVFKRMQNGQIGMAVSTELGARGLDVPWLSHVVNLDLPTDAEHYIHRAGR 731          
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A7S2RGS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGS7_9STRA)

HSP 1 Score: 186 bits (472), Expect = 6.990e-51
Identity = 106/223 (47.53%), Postives = 141/223 (63.23%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTA-SERYMREEPL-FVGGE-EAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
            +++ TPGR+ ++ F  +++KLG +  VVLDE DA+L  P+  ++  I+      R Q V ASAT  S     A +  + R  P+ FVGG  E +   +    +P  + H +V M + K F  LR LLNT+P P + MIFVN+  +V  L ++L  VGIIAAPL GESSK+DR EIMRRL   R+G+VVTTE+AARG+D   LTHVVN DLP DA  Y HRAGR
Sbjct:  590 VLIGTPGRVADIAFVHQKLKLGSISAVVLDEADAMLDDPHAADVKKILTEVKK-RTQLVVASATSGSAATREALTHTFGRGRPMDFVGGATEDSMVTKANIVMPPTVMHAVVQMEQRKMFSALRSLLNTEPHPEAAMIFVNEAHRVKVLCDKLLDVGIIAAPLHGESSKEDRTEIMRRLASGRLGLVVTTELAARGIDAPILTHVVNLDLPPDATRYAHRAGR 811          
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A4D9D1Y7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y7_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.470e-49
Identity = 103/240 (42.92%), Postives = 141/240 (58.75%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMR----------------EEPLFVGGEEAAGGGQRRGG----LPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
            ++V TPGR+ EMV ++R+ ++G    +VLDEVD LL   Y  ++  ++ A  G  RQAVFASATG SP V   +   M+                  PL    EE AG           LP+++RH I+  P VK  D LRR LNT+P P  V++FVND ++V  + E L+  GI AA LSG+S+K  RA  + RL   R+ + VTTE+AARG+D+  L+HV+N DLP+  + YVHRAGR
Sbjct:  185 VLVGTPGRVAEMVLEKRKARIGRAEMLVLDEVDMLLDDSYHGDLRMLVQAM-GSLRQAVFASATGASPGVEALASNVMQGPYQIISSSSSPSSPSSTPLLDPQEEDAGDQASSLPPSIELPASLRHGILITPPVKAVDNLRRFLNTEPKPECVLVFVNDALKVPRIVEALQAKGIDAAGLSGDSNKQTRANTLARLTSGRLRVCVTTEIAARGIDIPALSHVINLDLPSSLEQYVHRAGR 423          
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: L1JBQ8_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBQ8_GUITC)

HSP 1 Score: 166 bits (421), Expect = 2.920e-46
Identity = 92/224 (41.07%), Postives = 144/224 (64.29%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDR-RRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIG---MVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
            I+V TPGR+ E+      +++L  V+ +++DEVD  L+     +++ I+ A     RQ +FASATG    V + ++   R+EPL +   + AG    R  LP  +RH ++  P+VKK   ++++ N     T +++FVND  +V+ + ++L   G+IAAPL G+ SK+DR E+MRRL++  +G   +VV TE+AARG+D+  L+HVV+ DLPTDA+HYVHRAGR
Sbjct:  127 ILVGTPGRIVELASKMGAKIRLQGVKYLIVDEVDQCLKKAMQSDLNLILQACSSPARQTIFASATGNVNNVKSLAQSSFRKEPLLL---DLAG---LR--LPPQLRHCVIVTPRVKKIALVKKIFNLNGM-TGLLVFVNDQRRVDIICDKLFENGLIAAPLKGDESKEDRKEVMRRLREGTLGEVPLVVATEIAARGIDIPGLSHVVSLDLPTDANHYVHRAGR 341          
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: UPI001E1DCBBA (LOW QUALITY PROTEIN: ATP-dependent RNA helicase DeaD-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCBBA)

HSP 1 Score: 162 bits (411), Expect = 1.910e-42
Identity = 91/222 (40.99%), Postives = 136/222 (61.26%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPL--FVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
            +V+ TPGRL E+    R ++L   R VV+DEVD  L   +   ++A++ + PG R Q VF SATG   +V   ++++MRE  L  F+G ++          +PSNI H    +P   + D +R+L+ T+  P S + FV+DP +V+ + ERL  + + A  L G + K +RAE++R  +   I ++VTTE+AARGLDV  ++HV N DLPTDADHY+HR GR
Sbjct:  337 VVIGTPGRLAEL-SQNRVLRLRKTRMVVVDEVDQCLEDAFRVHLEAVLSSCPGDR-QLVFCSATGDKDIVRRYAQKWMREPALLRFLGKQK----------VPSNISHWSTVVPARLRIDIIRKLIYTKDPPISAICFVDDPRRVDIVCERLYAMKVPAGALRGNAHKLERAEVIRLFRKGAIRLLVTTEVAARGLDVPAVSHVFNLDLPTDADHYIHRXGR 546          
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A7S4BCL2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BCL2_CHRCT)

HSP 1 Score: 155 bits (392), Expect = 1.350e-40
Identity = 87/224 (38.84%), Postives = 137/224 (61.16%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRR-QAVFASATGRSPVVSTASERYMREEPLFVGGE--EAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERL-ETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
            +++ T GR+CE+ F+ +++KL  VR +VLDEVD  LR P+ +    +++     RR Q +FASAT  +P+V  ++ + M E PL +  +   A  GG    GLP ++ H +  +P  K+ +TL R     P P + ++FVN P +   + + L E+ G+ AA L G+  +++R  +MR     ++ ++++TEM ARGLD+  LTHVVN +LPTD  HYVHRAGR
Sbjct:  251 LLIGTAGRVCELNFEAKKLKLQRVRHLVLDEVDEALRTPHLEPTTRLIELMQDRRRLQLIFASATADTPMVQRSALQLM-ESPLLLQLQLDGATSGGV---GLPPHLVHALCAVPAPKQLETLGRFARISPAPKA-LVFVNSPHRAQVVAQMLVESYGVRAASLHGKQEREERVAVMRAFHSGKLPLIISTEMGARGLDIPGLTHVVNLELPTDERHYVHRAGR 469          
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: UPI001AFE8DD3 (DEAD/DEAH box helicase n=1 Tax=bacterium TaxID=1869227 RepID=UPI001AFE8DD3)

HSP 1 Score: 147 bits (372), Expect = 4.040e-39
Identity = 91/219 (41.55%), Postives = 133/219 (60.73%), Query Frame = 1
Query:    1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAG 657
            +VV TPGRL E++ D + +K    R +VLDEVD LL P +  ++  ++ +     RQ +FASAT  +P V   +ER+M+E P  V  E +         LP N++HT + + +  K D LR+L++    P + M+FVN   Q   + E+L   G+ AA L G + K DR  I++  ++ +I ++VT+EM ARGLD +HLTHV N DLPTDA HY+HRAG
Sbjct:  123 LVVGTPGRLAELINDGK-LKTQATRLLVLDEVDHLLDPTFKTDLIRVLKSV-SRDRQTLFASAT-ITPDVQEVAERWMKE-PTHVHVEASYK-------LPPNLQHTYMEV-EGHKSDALRKLIHASQ-PKAAMVFVNSSKQTEEIAEKLSFKGLKAAALHGGARKQDRGAILKAFREGQIQVLVTSEMGARGLDFSHLTHVFNLDLPTDAAHYLHRAG 328          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4S8_ECTSI5.980e-13294.57DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835Z5P1_9STRA1.640e-8563.64Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2XV29_9STRA5.890e-6250.00Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A0G4F225_VITBC1.480e-5547.35Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S2RGS7_9STRA6.990e-5147.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D1Y7_9STRA1.470e-4942.92Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
L1JBQ8_GUITC2.920e-4641.07Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
UPI001E1DCBBA1.910e-4240.99LOW QUALITY PROTEIN: ATP-dependent RNA helicase De... [more]
A0A7S4BCL2_CHRCT1.350e-4038.84Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
UPI001AFE8DD34.040e-3941.55DEAD/DEAH box helicase n=1 Tax=bacterium TaxID=186... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10510contigS-firma_F_contig10510:202..3749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G4S8
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
Evalue9.8e-133
EggNOG OGsCOG0513@1|root,KOG0327@2759|Eukaryota
Descriptionhelicase activity
COG categoryJKL
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-20_000520.1
Exons5
Model size663
Cds size663
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10510.715.1prot_S-firma_F_contig10510.715.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10510 202..3749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.9776556-CDS-S-firma_F_contig10510:201..3331622815586.9776556-CDS-S-firma_F_contig10510:201..333Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 202..333 -
1696949436.0853631-CDS-S-firma_F_contig10510:201..3331696949436.0853631-CDS-S-firma_F_contig10510:201..333Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 202..333 -
1622815586.9923706-CDS-S-firma_F_contig10510:1028..11331622815586.9923706-CDS-S-firma_F_contig10510:1028..1133Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 1029..1133 -
1696949436.1097934-CDS-S-firma_F_contig10510:1028..11331696949436.1097934-CDS-S-firma_F_contig10510:1028..1133Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 1029..1133 -
1622815587.0028944-CDS-S-firma_F_contig10510:2070..21571622815587.0028944-CDS-S-firma_F_contig10510:2070..2157Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 2071..2157 -
1696949436.1210482-CDS-S-firma_F_contig10510:2070..21571696949436.1210482-CDS-S-firma_F_contig10510:2070..2157Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 2071..2157 -
1622815587.0154634-CDS-S-firma_F_contig10510:2886..30651622815587.0154634-CDS-S-firma_F_contig10510:2886..3065Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 2887..3065 -
1696949436.1395597-CDS-S-firma_F_contig10510:2886..30651696949436.1395597-CDS-S-firma_F_contig10510:2886..3065Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 2887..3065 -
1622815587.0293152-CDS-S-firma_F_contig10510:3589..37491622815587.0293152-CDS-S-firma_F_contig10510:3589..3749Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 3590..3749 -
1696949436.150794-CDS-S-firma_F_contig10510:3589..37491696949436.150794-CDS-S-firma_F_contig10510:3589..3749Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 3590..3749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10510.715.1

>prot_S-firma_F_contig10510.715.1 ID=prot_S-firma_F_contig10510.715.1|Name=mRNA_S-firma_F_contig10510.715.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=221bp
IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDA
TPGGRRQAVFASATGRSPVVSTASERYMREEPLFVGGEEAAGGGQRRGGL
PSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERL
ETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLT
HVVNYDLPTDADHYVHRAGR*
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mRNA from alignment at S-firma_F_contig10510:202..3749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10510.715.1 ID=mRNA_S-firma_F_contig10510.715.1|Name=mRNA_S-firma_F_contig10510.715.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3548bp|location=Sequence derived from alignment at S-firma_F_contig10510:202..3749- (Sphaerotrichia firma ET2_F female)
ATCGTCGTTGCTACCCCCGGGAGGCTCTGCGAGATGGTGTTCGACCGGCG GCGCATGAAGCTCGGCATGGTCCGCACCGTCGTCCTGGACGAGGTGGACG CGCTGCTGCGGCCCCCGTACGACCAGGAGATCGACGCCATCATGGATGCA ACTCCCGGAGGTGTGCGGGCTTGGCGCCTTCAGGGAGGGGTGGATTTGGG GTGCTAGGTGCTGAGGGCGTGGGTGTTGTTCGGTTTGGTGGTGGTTGTGG TGGTGGTGATGGTGTTGGTGTTGTGTTGTTGTTGTTGGTTGGTTGTTGTT CCTGTTCTTGTTCTTGGTGTTCTTTTGTTGTTGTTGTTCCTTTTTTGTGG TTGTGCTGGTGGTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTCTTTTTTGTGGTTGTGCTGGT GTATTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGCTGCCGTTGTCGTT GTCGTTGTTGTCGTTGTTCATGTTGTGACCGGTTGTGGTGGTACTAGTGG CGCTCGGCGCCAGCTGTTTTGCTCAGGGAGGCGCAAAGGCAACCCCCGTC CGCCGGTCGCCCTTGTTCGTTCACTCTTGGCGACCTCTGTGTTTTTTTTG TGCTGCAAAACTCATGCTTTCTCTTGCTTGTCAGGGAGAAGACAGGCGGT GTTTGCCTCGGCGACGGGGCGTTCGCCGGTGGTCTCCACCGCCTCCGAGC GCTACATGAGGGAGGAGCCGCTTTTCGTGGGCGGTGAGGAGGCGGCCGGG GGCGGCCAGCGGCGGGGCGGGCTTCCGTCCAACATCCGGCACACGATCGT CACCATGCCCAAGGTTTGCTGCTGTTGTTGTTGGTGTTTGTTGTTGTTGG TGGTGTTGGTGGTGGTGTTGGTGGTGTTGGTGGTGGTGTTGGTGGTGGTG GTGGTGGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTGTTGTTGTT GTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGTTGGTGTTGG TGTTGGTGGTGTTGGTGGTGGTGTGGTGTTGTTGCTGGTGGTGGTGGTGG TGGTGTTGGTGTTGTTGTTGTTGGTGGTGGTGGTGTTGGTGTTGGTGGTG GTGGTGGTGGGGGGGAGGGGAGGGGTATGTTGTTGTTGTTGTTGTTGTTG TTGTTGTTGTCATTGTTTGCACAGTACTGTTTGTCGGCCACACCCGACAA CGAGCCGACCTGTTTTGTGCGCCCCCTTGATACTCGTCTCCGACCCCGCC TCTTTGTGCGTGAAAACCATGTGCCCTTTTTTGCGACGACTGCTCTCTCT TTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCCTCTCTCGTTCC AAGCAATGACAATCCCCTTGACGTTCGATCTCCAGGTGAAAAACGAACGC TCCTTGTGTTTCCGTTGGCGCCAAGCGCCGGAAACACCCACAACAGCAGT GTCAAGCCAACCTTGGACCCGCACCCGCACTGCGTGTTAGCCCCGACCCT CGACGATGTGTGCGTTTCTCATGCCTCTTGGGTCTTTTCTAGGTGAAGAA GTTTGACACTCTGCGGCGGCTGCTCAACACGCAGCCCTTCCCGACGAGCG TCATGATCTTCGTCAACGATCCCATTCAGGTACATCAATAGCTTGGCACC GTAGACCAACTTCGTCTGCGATTTTCGGATTTTTCAAGCGTTGTTTTTGC TGTGTTTTTGCACCCTTTTCTAGAGGGAAAGCTTGAGCTTCAGCCTGTGA ACCAAAGGGAATCGCCGCGGCTAGTGTTGGACCAGTACGGACGAAGGGGG GTACAGCAGTACTGGGTGGCGAGGACGGAGCAGGCCTCACTGTGAAGACG GCAGCAGCCCGAGGCACGGTGTCGACGCCAGTGCAATCAATCGCCGGCGT ACTTTGCCCCGGCGGACTGTTTTTCTTGGAGGTACTGTAGAACTACTGCT GTAGGACGAGAAAAATAACGCGCAGCGGGTTTCCAGCCCTCAGCCTGGTT TCACGGCGCTCAGGCCTATCCCACCCCTGAAGGCCGGATAGGTGCAGGAC AAGAGGGCGAGACGTAGGGGGGTGGGGTTCCGTCGATGCTTCAGCCTTGA CGGGAGGTCCTTGGTTTGTTCTATTCTACTGTAGTGCTTCTACTACACGT CACCTGAATGAAATTAAAAAAATTAAAATTTTAAATAAATTAAGCACGGG GGTATCCGTAGACAAAAATAAAAAAATAAAGAATATTCCCTCACCGCCTC CGACCACAGCAGCTGGCACTATAGTAGTCAATACCAGCACACCTTTACCT TTCCTATCCGATGTACGGCAATTTCTGGTTTCTTGCTTGATATTTTGTTG CAAAGGGGTAGACTGTTCCTACTGCAGTCTAGTTCTTGGCCGTTGTTATG CTCGGGTCGAACCGGCGCACGGAGCAACCTCAAACCGTCCGCACACAGCA GCAGTATGCACGCGCCAGCCCGTGAACGACGCGCAAGAAAGCCAGGCCGG GGCTGATCCCTGGTTTCCTGTCTGTTCGTTGGTCTATTCGTCGTCGGTGG ATCTGTGGTCGCTCAGGTGAACTGGCTGACGGAGCGCCTCGAGACCGTCG GCATCATCGCCGCGCCGCTTTCTGGCGAGAGCTCCAAGGACGACCGAGCC GAAATCATGAGGCGTTTGCAGGTCCGAACGTTTTCTCTCTTTTGTCTTCT TGGTTTTTTTTTTAGCGCCGGCGAGACGCAAGATTCCTTCGGGGTCAGTT TGGAATCGCCAAGGCGCGAACGTGTGGTCCCATGTTTTCGCTTGTTTTTT TTCCGCGGCGTCGAGTGTACCCTGTTCTCGCGACCGCGGGGCCCCCATGG ATGTGTTTTTTTTTTTTGGGCCATGCGTTGGACTAATTTACTACTCCGTA TAAGAGAGCTAATATAGCGTGAGAAACAGCAACAAGCAAGGCGGTTCGGG TGTGTTCCCACCGGGCTGGGTGGGGCGGCGGCATTGCTCGGCGTTCGATG TTGCTGCGTGTTCCGGCCGACCTATCTTTTTCCAGGTAGTATACCGATCC GTGTTTTGATTGGACCATAGTTCTTGTTGTTTCTCGCAATAGTTTTGGCT CTCTACTGCTACTACCTGTACTGCTTGTAGTCCAAGCCATCCATGGAGAT CCTGTGGTAAAAAAAAAAAAAAAAATTAGGGCACGCTCGACGCCGCGGAA AGAAATTTAAAAACAAACAAGTTTTAAAGTTTTGGCTGCATACACGCGCG CCCCGAGCGAGAGTATTTAAACCGAACCCGGTGCCCCTTGGGGTGCCTGG CTTCCTGCCTGCCGGTCCCCCTCCACCGTCTTTCCGCCTCCCTCCATTCT TGACACTTTGGTGCAGGACAAGCGCATCGGCATGGTGGTGACGACCGAGA TGGCCGCGAGAGGGCTGGACGTCGCGCACCTCACCCACGTGGTGAACTAC GACCTCCCCACCGACGCCGACCACTACGTGCACCGTGCGGGCAGGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10510:202..3749-

>mRNA_S-firma_F_contig10510.715.1 ID=mRNA_S-firma_F_contig10510.715.1|Name=mRNA_S-firma_F_contig10510.715.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1326bp|location=Sequence derived from alignment at S-firma_F_contig10510:202..3749- (Sphaerotrichia firma ET2_F female)
ATCGTCGTTGCTACCCCCGGGAGGCTCTGCGAGATGGTGTTCGACCGGCG
GCGCATGAAGCTCGGCATGGTCCGCACCGTCGTCCTGGACGAGGTGGACG
CGCTGCTGCGGCCCCCGTACGACCAGGAGATCGACGCCATCATGGATGCA
ACTCCCGGAGATCGTCGTTGCTACCCCCGGGAGGCTCTGCGAGATGGTGT
TCGACCGGCGGCGCATGAAGCTCGGCATGGTCCGCACCGTCGTCCTGGAC
GAGGTGGACGCGCTGCTGCGGCCCCCGTACGACCAGGAGATCGACGCCAT
CATGGATGCAACTCCCGGAGGGAGAAGACAGGCGGTGTTTGCCTCGGCGA
CGGGGCGTTCGCCGGTGGTCTCCACCGCCTCCGAGCGCTACATGAGGGAG
GAGCCGCTTTTCGTGGGCGGTGAGGAGGCGGCCGGGGGCGGCCAGCGGCG
GGGCGGGCTTCCGTCCAACATCCGGCACACGATCGTCACCATGCCCAAGG
GAGAAGACAGGCGGTGTTTGCCTCGGCGACGGGGCGTTCGCCGGTGGTCT
CCACCGCCTCCGAGCGCTACATGAGGGAGGAGCCGCTTTTCGTGGGCGGT
GAGGAGGCGGCCGGGGGCGGCCAGCGGCGGGGCGGGCTTCCGTCCAACAT
CCGGCACACGATCGTCACCATGCCCAAGGTGAAGAAGTTTGACACTCTGC
GGCGGCTGCTCAACACGCAGCCCTTCCCGACGAGCGTCATGATCTTCGTC
AACGATCCCATTCAGGTGAAGAAGTTTGACACTCTGCGGCGGCTGCTCAA
CACGCAGCCCTTCCCGACGAGCGTCATGATCTTCGTCAACGATCCCATTC
AGGTGAACTGGCTGACGGAGCGCCTCGAGACCGTCGGCATCATCGCCGCG
CCGCTTTCTGGCGAGAGCTCCAAGGACGACCGAGCCGAAATCATGAGGCG
TTTGCAGGTGAACTGGCTGACGGAGCGCCTCGAGACCGTCGGCATCATCG
CCGCGCCGCTTTCTGGCGAGAGCTCCAAGGACGACCGAGCCGAAATCATG
AGGCGTTTGCAGGACAAGCGCATCGGCATGGTGGTGACGACCGAGATGGC
CGCGAGAGGGCTGGACGTCGCGCACCTCACCCACGTGGTGAACTACGACC
TCCCCACCGACGCCGACCACTACGTGCACCGTGCGGGCAGGTGAGACAAG
CGCATCGGCATGGTGGTGACGACCGAGATGGCCGCGAGAGGGCTGGACGT
CGCGCACCTCACCCACGTGGTGAACTACGACCTCCCCACCGACGCCGACC
ACTACGTGCACCGTGCGGGCAGGTGA
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