mRNA_S-firma_F_contig10510.715.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 5.980e-132 Identity = 209/221 (94.57%), Postives = 212/221 (95.93%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPLFVGGEE-AAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
IV+ATPGRLCE+VFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATP GRRQAVFASATGRSPVVS ASERYMREEPLFVGG + G GQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFP SVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRI MVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR
Sbjct: 958 IVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPRGRRQAVFASATGRSPVVSAASERYMREEPLFVGGGDLGVGSGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPESVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 1178
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA) HSP 1 Score: 286 bits (732), Expect = 1.640e-85 Identity = 140/220 (63.64%), Postives = 175/220 (79.55%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGR-RQAVFASATGRSPVVSTASERYMREEPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAG 657
+++ TPGR+CE+ +++R+KL V+ VVLDEVD L+RPPYD+EID I+ RQ V+ASATGRSP V A+ ++M+E +V G + AG GLP NI+HTI+T PKV+KF++LRRL++TQPFP SVM+FVNDP QV WLTE+LETVGIIAAPLSGES K++R EIM+RL D R+ MVVTTEMAARG+DV LTHVVNYDLPTDA+HYVHRAG
Sbjct: 662 VLIGTPGRVCELALEKKRVKLANVKFVVLDEVDTLMRPPYDEEIDQIIGTMRSSEYRQTVYASATGRSPTVERAAAKHMKEGYTYVVGNDNAGAD----GLPPNIKHTIITSPKVRKFESLRRLMHTQPFPESVMVFVNDPHQVRWLTEKLETVGIIAAPLSGESVKEERTEIMKRLTDGRLAMVVTTEMAARGIDVPQLTHVVNYDLPTDAEHYVHRAG 877
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A7S2XV29_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV29_9STRA) HSP 1 Score: 211 bits (537), Expect = 5.890e-62 Identity = 110/220 (50.00%), Postives = 148/220 (67.27%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
+VV TPGRL ++V + R+++G VLDEVD LL + E+D +M ++Q VFASATGRS V A +M + +FVGG G +R LP N+ HT ++ + D +RRL++ +P P +++F ND +V L E+L +GI+AAPLSGESSKDDR E +RRLQ +I ++V+TE+AARGLDV LTHVVNYDLPTDA+HYVHRAGR
Sbjct: 272 VVVGTPGRLADLVIEYGRLRVGHATVAVLDEVDMLLESQFRGEVDHLMQKF-NSQKQVVFASATGRSEAVEAAMADFM-VDGVFVGG--TGSGSERAQALPPNVAHTFISCRPDLRLDNIRRLISVEPAPEGILVFTNDQHKVQILLEKLLDLGIVAAPLSGESSKDDRKEAVRRLQKGQISVLVSTELAARGLDVPQLTHVVNYDLPTDAEHYVHRAGR 487
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A0G4F225_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F225_VITBC) HSP 1 Score: 198 bits (504), Expect = 1.480e-55 Identity = 107/226 (47.35%), Postives = 148/226 (65.49%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGG----RRQAVFASATGRSPVVSTASERYMRE--EPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
+VV TPGRL + V DRR++ L V+ +VLDEVD L+R PY+ +++++M P G RQ +FASATG V+ A++RYMR + GG + + G +P NI H + + + K + LR+ L+T P V+ F N +V WL + L IIAAPLSG +SKDDRAE+ +R+Q+ +IGM V+TE+ ARGLDV L+HVVN DLPTDA+HY+HRAGR
Sbjct: 508 VVVGTPGRLYDFVLDRRKVDLSRVKYLVLDEVDQLIRDPYEGQLESLMATIPKGTHSTHRQTIFASATGAQKSVTQAAKRYMRPVWHVIRPGGVKHSDEGVPL--IPPNIHHIFMCVREDKVTEALRKFLHTDPVDKRVLCFCNKQGRVKWLVDHLLQKQIIAAPLSGFTSKDDRAEVFKRMQNGQIGMAVSTELGARGLDVPWLSHVVNLDLPTDAEHYIHRAGR 731
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A7S2RGS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGS7_9STRA) HSP 1 Score: 186 bits (472), Expect = 6.990e-51 Identity = 106/223 (47.53%), Postives = 141/223 (63.23%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTA-SERYMREEPL-FVGGE-EAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
+++ TPGR+ ++ F +++KLG + VVLDE DA+L P+ ++ I+ R Q V ASAT S A + + R P+ FVGG E + + +P + H +V M + K F LR LLNT+P P + MIFVN+ +V L ++L VGIIAAPL GESSK+DR EIMRRL R+G+VVTTE+AARG+D LTHVVN DLP DA Y HRAGR
Sbjct: 590 VLIGTPGRVADIAFVHQKLKLGSISAVVLDEADAMLDDPHAADVKKILTEVKK-RTQLVVASATSGSAATREALTHTFGRGRPMDFVGGATEDSMVTKANIVMPPTVMHAVVQMEQRKMFSALRSLLNTEPHPEAAMIFVNEAHRVKVLCDKLLDVGIIAAPLHGESSKEDRTEIMRRLASGRLGLVVTTELAARGIDAPILTHVVNLDLPPDATRYAHRAGR 811
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A4D9D1Y7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y7_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.470e-49 Identity = 103/240 (42.92%), Postives = 141/240 (58.75%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMR----------------EEPLFVGGEEAAGGGQRRGG----LPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
++V TPGR+ EMV ++R+ ++G +VLDEVD LL Y ++ ++ A G RQAVFASATG SP V + M+ PL EE AG LP+++RH I+ P VK D LRR LNT+P P V++FVND ++V + E L+ GI AA LSG+S+K RA + RL R+ + VTTE+AARG+D+ L+HV+N DLP+ + YVHRAGR
Sbjct: 185 VLVGTPGRVAEMVLEKRKARIGRAEMLVLDEVDMLLDDSYHGDLRMLVQAM-GSLRQAVFASATGASPGVEALASNVMQGPYQIISSSSSPSSPSSTPLLDPQEEDAGDQASSLPPSIELPASLRHGILITPPVKAVDNLRRFLNTEPKPECVLVFVNDALKVPRIVEALQAKGIDAAGLSGDSNKQTRANTLARLTSGRLRVCVTTEIAARGIDIPALSHVINLDLPSSLEQYVHRAGR 423
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: L1JBQ8_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBQ8_GUITC) HSP 1 Score: 166 bits (421), Expect = 2.920e-46 Identity = 92/224 (41.07%), Postives = 144/224 (64.29%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDR-RRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIG---MVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
I+V TPGR+ E+ +++L V+ +++DEVD L+ +++ I+ A RQ +FASATG V + ++ R+EPL + + AG R LP +RH ++ P+VKK ++++ N T +++FVND +V+ + ++L G+IAAPL G+ SK+DR E+MRRL++ +G +VV TE+AARG+D+ L+HVV+ DLPTDA+HYVHRAGR
Sbjct: 127 ILVGTPGRIVELASKMGAKIRLQGVKYLIVDEVDQCLKKAMQSDLNLILQACSSPARQTIFASATGNVNNVKSLAQSSFRKEPLLL---DLAG---LR--LPPQLRHCVIVTPRVKKIALVKKIFNLNGM-TGLLVFVNDQRRVDIICDKLFENGLIAAPLKGDESKEDRKEVMRRLREGTLGEVPLVVATEIAARGIDIPGLSHVVSLDLPTDANHYVHRAGR 341
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: UPI001E1DCBBA (LOW QUALITY PROTEIN: ATP-dependent RNA helicase DeaD-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCBBA) HSP 1 Score: 162 bits (411), Expect = 1.910e-42 Identity = 91/222 (40.99%), Postives = 136/222 (61.26%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPL--FVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
+V+ TPGRL E+ R ++L R VV+DEVD L + ++A++ + PG R Q VF SATG +V ++++MRE L F+G ++ +PSNI H +P + D +R+L+ T+ P S + FV+DP +V+ + ERL + + A L G + K +RAE++R + I ++VTTE+AARGLDV ++HV N DLPTDADHY+HR GR
Sbjct: 337 VVIGTPGRLAEL-SQNRVLRLRKTRMVVVDEVDQCLEDAFRVHLEAVLSSCPGDR-QLVFCSATGDKDIVRRYAQKWMREPALLRFLGKQK----------VPSNISHWSTVVPARLRIDIIRKLIYTKDPPISAICFVDDPRRVDIVCERLYAMKVPAGALRGNAHKLERAEVIRLFRKGAIRLLVTTEVAARGLDVPAVSHVFNLDLPTDADHYIHRXGR 546
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: A0A7S4BCL2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BCL2_CHRCT) HSP 1 Score: 155 bits (392), Expect = 1.350e-40 Identity = 87/224 (38.84%), Postives = 137/224 (61.16%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRR-QAVFASATGRSPVVSTASERYMREEPLFVGGE--EAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERL-ETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 660
+++ T GR+CE+ F+ +++KL VR +VLDEVD LR P+ + +++ RR Q +FASAT +P+V ++ + M E PL + + A GG GLP ++ H + +P K+ +TL R P P + ++FVN P + + + L E+ G+ AA L G+ +++R +MR ++ ++++TEM ARGLD+ LTHVVN +LPTD HYVHRAGR
Sbjct: 251 LLIGTAGRVCELNFEAKKLKLQRVRHLVLDEVDEALRTPHLEPTTRLIELMQDRRRLQLIFASATADTPMVQRSALQLM-ESPLLLQLQLDGATSGGV---GLPPHLVHALCAVPAPKQLETLGRFARISPAPKA-LVFVNSPHRAQVVAQMLVESYGVRAASLHGKQEREERVAVMRAFHSGKLPLIISTEMGARGLDIPGLTHVVNLELPTDERHYVHRAGR 469
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Match: UPI001AFE8DD3 (DEAD/DEAH box helicase n=1 Tax=bacterium TaxID=1869227 RepID=UPI001AFE8DD3) HSP 1 Score: 147 bits (372), Expect = 4.040e-39 Identity = 91/219 (41.55%), Postives = 133/219 (60.73%), Query Frame = 1
Query: 1 IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGGRRQAVFASATGRSPVVSTASERYMREEPLFVGGEEAAGGGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPTSVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIGMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAG 657
+VV TPGRL E++ D + +K R +VLDEVD LL P + ++ ++ + RQ +FASAT +P V +ER+M+E P V E + LP N++HT + + + K D LR+L++ P + M+FVN Q + E+L G+ AA L G + K DR I++ ++ +I ++VT+EM ARGLD +HLTHV N DLPTDA HY+HRAG
Sbjct: 123 LVVGTPGRLAELINDGK-LKTQATRLLVLDEVDHLLDPTFKTDLIRVLKSV-SRDRQTLFASAT-ITPDVQEVAERWMKE-PTHVHVEASYK-------LPPNLQHTYMEV-EGHKSDALRKLIHASQ-PKAAMVFVNSSKQTEEIAEKLSFKGLKAAALHGGARKQDRGAILKAFREGQIQVLVTSEMGARGLDFSHLTHVFNLDLPTDAAHYLHRAG 328 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10510.715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10510.715.1 >prot_S-firma_F_contig10510.715.1 ID=prot_S-firma_F_contig10510.715.1|Name=mRNA_S-firma_F_contig10510.715.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=221bp IVVATPGRLCEMVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDAback to top mRNA from alignment at S-firma_F_contig10510:202..3749- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10510.715.1 ID=mRNA_S-firma_F_contig10510.715.1|Name=mRNA_S-firma_F_contig10510.715.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3548bp|location=Sequence derived from alignment at S-firma_F_contig10510:202..3749- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10510:202..3749- >mRNA_S-firma_F_contig10510.715.1 ID=mRNA_S-firma_F_contig10510.715.1|Name=mRNA_S-firma_F_contig10510.715.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1326bp|location=Sequence derived from alignment at S-firma_F_contig10510:202..3749- (Sphaerotrichia firma ET2_F female)back to top |