mRNA_S-firma_F_contig10509.714.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10509.714.1
Unique NamemRNA_S-firma_F_contig10509.714.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 4.760e-146
Identity = 233/300 (77.67%), Postives = 265/300 (88.33%), Query Frame = 1 
Query:  880 TTSTLATTTGAVPDGXXXXXXXXXXXGGSNTMAT-----DPASISSRSPSSTLGLLMIFQLQFVSLLRLMEANITKPFMDFLDSLKWMNLHFEVDISFFNCNDEETRFDWANDDNGTWALNTFLVFFLLAVLIVAHILLVSYLEASWLAQANAIHRHRLEFLRRRTAEEAAAPFDGRTEAAYAKYLDAQNQDRDLLEQEKLSTERYLKRHHSIWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVLGLCALIVFPLLMFIYVNRIVWSRVRPDHSPLRFEPNPNASKGCFLFKACG 1764
            T +T+ TT G VPDG        XXX             DP+S+S+RSP +TLGLLM+FQ+QFVSLLR+MEANIT PFM+FLDSLKWMNLHFEVDISF +C++EETRF+W+NDDNGTWALNTFLVFFLL VLI+ HILLVSYLEA+WL+QANAIHRHRL  LR+R+++EAAAPFDGRTEAAYAKYLDAQN DRDL EQE++STER+LKRHHS+WMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVV+G+CALIVFP+LMFIYV+RIVWSRVRPD+SPLR+EPNPNA KGCFLFKACG
Sbjct:  467 TGATMTTTGGFVPDGSSAVTNNAXXXXXXXXXXXXXXXXDPSSVSTRSPGATLGLLMVFQMQFVSLLRMMEANITTPFMNFLDSLKWMNLHFEVDISFLSCDEEETRFNWSNDDNGTWALNTFLVFFLLLVLIILHILLVSYLEAAWLSQANAIHRHRLAILRQRSSDEAAAPFDGRTEAAYAKYLDAQNHDRDLYEQEQVSTERFLKRHHSVWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVMGICALIVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACG 766
[Close]
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 433 bits (1113), Expect = 1.940e-133
Identity = 210/250 (84.00%), Postives = 238/250 (95.20%), Query Frame = 1 
Query: 1015 STLGLLMIFQLQFVSLLRLMEANITKPFMDFLDSLKWMNLHFEVDISFFNCNDEETRFDWANDDNGTWALNTFLVFFLLAVLIVAHILLVSYLEASWLAQANAIHRHRLEFLRRRTAEEAAAPFDGRTEAAYAKYLDAQNQDRDLLEQEKLSTERYLKRHHSIWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVLGLCALIVFPLLMFIYVNRIVWSRVRPDHSPLRFEPNPNASKGCFLFKACG 1764
            +TLGLLM+FQ+QFVSLLR++EANIT PFM+FLDSLKWMNLHFEVD++F +C+ EETRFDW+NDDNGTWALNTFLVF LL VLI+ HILLVSYLEA+WL+QANAIHRHRL  LR+R+++EAAAPFDGRTEAAYAKYLDAQN DRDL EQE++STER+LKRH S+WMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVV+G+CALIVFP+LMFIYV+RIVWSRVRPD+SPLR+EPNPNA KGCFLFKACG
Sbjct:  840 TTLGLLMVFQMQFVSLLRMLEANITTPFMNFLDSLKWMNLHFEVDLTFLSCDGEETRFDWSNDDNGTWALNTFLVFSLLLVLIILHILLVSYLEAAWLSQANAIHRHRLAVLRQRSSDEAAAPFDGRTEAAYAKYLDAQNHDRDLYEQERVSTERFLKRHQSVWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVMGVCALIVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACG 1089
[Close]
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 6.790e-36
Identity = 105/269 (39.03%), Postives = 140/269 (52.04%), Query Frame = 1 
Query:  967 NTMATDPASISSRSPSSTLGLLMIFQLQFVSLLRLMEANITKPFMDFLDSLKWMNLHFEVD-ISFFNCNDEETRFDWANDDNGTWALNTFLVFFLLAVLIVAHILLVSYLEASWLAQANAIHRHRLEFLRRRTAEEAAAPFDGRTEAAYAKYLDAQNQDRDLLEQEKLSTERYLKRHHSIWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVLGLCALIVFPLLMFIYVNRIVWSRVRPDHSPLRFEPNPNASKG---CFLFKAC 1761
            + ++TDP ++SSRSPS+TLGLLMIFQ+QF+S LRL+EANIT PF   LD LKW+NLHF+VD + F  C+DE++ F W  DDNG WA NTF VF  +A+LI+ HILL+SY+EASWL+QA       ++ L  R A   A    G                                   S+ +   H +   L     G   A    +  G   LV   +    +FP+ +  YV RIVWSRV+P   P+ F       +G   C+    C
Sbjct:  997 DAVSTDPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFAGCDDEDS-FTWTEDDNGMWAFNTFAVFGFMALLILCHILLLSYIEASWLSQAQL----GVDILPPRGAGFPALRLPG-----------------------------------SVNLRGSHDQQRLLASGGAGGVCAVLPSVRHG---LVRRMVRRKFIFPIFLMFYVGRIVWSRVKPQEGPVTFTKGLAPEEGRKRCWCVSLC 1222
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BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.000e-14
Identity = 82/275 (29.82%), Postives = 133/275 (48.36%), Query Frame = 1 
Query:  985 PASISSRSPSSTLGLLMIFQLQFVSLLRLMEANITKP--FMDFLDSLKWMNLHFEVDISFFNCNDEETRFDWANDDNGTWAL-------NTFLVFFLLAVLIVAHILLVSYLEASWLAQANAIHRHRLEFLRRRTAEEAA---------------------APFDGRTEAAY---AKYLDAQNQDRDLL---EQEKLSTERYLKRHH-SIWMYFPHVELLFLLFAYQGASAAEARMIY-SGCFPLVVLGLCALIVFPLLMFIYVNRIVWSRVRPD 1695
            P  +S R PS+TL  +++ QLQF+++L L++  +++     DF+  L+W+NL +  DI       E+   D    + G   +       N  LV  +L  +   H+ +VS  EA WL +  A  R  L+  RRR    +                      +PF  R  +     ++  D +   R+L+    + +LS     + H  S W++FPHVEL+FL FA++GA A+ A  I  S C  +    + A++++PLLMF  V R ++ RVRPD
Sbjct: 1413 PPRVSHRRPSATLAFVLMTQLQFLAMLSLVDYVVSQGSWLADFVVGLRWINLWWPADIG------EDIASDGCIFETGASEIGALVFVGNLALVLGILLAIFFLHVAVVSGAEALWLTKKRA--RENLDGARRRNTPISELLARFRGGRIIRQTNPGLTDPSPFASRNPSLVRDGSQRTDEEEGGRELVPMCSENRLSPVAMCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPD 1679
[Close]
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.460e-13
Identity = 81/270 (30.00%), Postives = 133/270 (49.26%), Query Frame = 1 
Query:  985 PASISSRSPSSTLGLLMIFQLQFVSLLRLMEANITKP--FMDFLDSLKWMNLHFEVDISFFNCNDEETRFDWANDDNGTWAL--NTFLVFFLLAVLIVAHILLVSYLEASWLAQANAIHRHRLEFLRRRTAEEAA---------------------APFDGRTEAAY---AKYLDAQNQDRDLL---EQEKLSTERYLKRHH-SIWMYFPHVELLFLLFAYQGASAAEARMIY-SGCFPLVVLGLCALIVFPLLMFIYVNRIVWSRVRPD 1695
            P+ +S R PS+TL  +++ QLQF+++L L++  +++     DF+  L+W+NL +  +I     +D    F+    + G      N  LV  +L  +   H+ +VS  EA WL +  A  R  L+  RRR    +                      +PF  R  +     ++  D +   R L+    + +LS     + H  S W++FPHVEL+FL FA++GA A+ A  I  S C  +    + A++++PLLMF  V R ++ RVRPD
Sbjct: 1372 PSRVSHRRPSATLAFVLMTQLQFLAMLSLVDYVVSQGSWLADFVVGLRWINLWWPAEIGEDIVSDG-CIFETGASEIGALVFVGNLALVLGILLAIFFLHVAVVSGAEALWLTKKRA--RENLDGARRRNTPISELLARFRGGRMIRRTNPGLTDPSPFGSRNPSLVRDRSQRTDEEEGGRGLVPMCSENQLSPVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPD 1638
[Close]
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.540e-12
Identity = 80/278 (28.78%), Postives = 131/278 (47.12%), Query Frame = 1 
Query:  982 DPASISSRSPSSTLGLLMIFQLQFVSLLRLMEANITKP--FMDFLDSLKWMNLHFEVDISFFNCNDEETRFDWANDDNGTWAL--NTFLVFFLLAVLIVAHILLVSYLEASWLAQANAIHRHRLEFLRRRTAEEAA---------------------APFDGRTEAAYAKYLDAQNQDRDLLEQEK-------LSTERYLK-----RHHSI--WMYFPHVELLFLLFAYQGASAAEARMIY-SGCFPLVVLGLCALIVFPLLMFIYVNRIVWSRVRPD 1695
            +P   S+R PS+TL  +++ QLQF++ L L++  + +     DF+  L+W+NL +  ++   N   +E  F+      G      N  LV  +L  +   H+  VS +EA WL +  A  R  L+  RRR A                         +PF  +             ++ D+ ++E+       + +E  L      R HS   W++FPHVEL+FL FA++GA A+ A  I  S C  +    + A++++PLLMF+ V R +  RVRP+
Sbjct: 1183 NPPHASNRRPSATLAFVLMTQLQFLATLSLVDYVMDEDSWLADFVTGLRWINLWWPAEVG-QNIASDECAFEAGASGIGALVFVGNLALVIGILLAIFFMHVAAVSGVEALWLTKKRA--RENLDAARRRGAPIGELQARLRGGRIICRTNPDLADPSPFARQAPQPSGTPSTLHEEESDMSDEEEGGRGLVPMRSENRLSPVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEIFYTAIAAMVLYPLLMFVTVFRTLLVRVRPN 1457
[Close]
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: A0A835ZA46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA46_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 7.450e-11
Identity = 78/283 (27.56%), Postives = 109/283 (38.52%), Query Frame = 1 
Query: 1018 TLGLLMIFQLQFVSLLRLMEANITKP-----------------FMDFLDSLKWMNLHFEVDISFFNCNDEETRFDWANDDNGTWALNTFLVFFLLAVLIVAHILLVSYLEASWLAQANAIHRHRLE--------------------------------------------FLRRRTAEEAAAPFDGRTEAAYAKYLDAQNQ---DRDLLEQEKLSTERYLKRHHSIWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVLGLCALIVFPLLMFIYVNRIV 1674
            T   +M+ QLQF+S   L++AN +                   F  F DSL W+NL +  D+     +D     D       T+  NT LV  +   + V H+  VS +EA WLA+  A H                                                 F R  +   A A    R  +      DA N    D               +R HS+W++FPHVELLFLLFAY+GA AA+A M+ S C  LV   +  L+ +P+L+     R+V
Sbjct: 1234 TAAFMMVAQLQFMSTTSLVDANQSTXXXXXXXXXXXXXXXXXXFRSFTDSLTWVNLWWNADM--LVPDDSCIASDTTGVGGPTFVGNTVLVIGITLAIFVLHLAGVSLVEAFWLAKDKARHESGSSGHLSCRNDSXXXXXXXXXXXXXXXXXXXEASDDVMDTVMIGPGAFARNASKMRAQARLKKRRPSGQEAVFDAANDAPVDHXXXXXXXXXXXXVRRRSHSVWLHFPHVELLFLLFAYEGAVAAQASMLESPCASLVAASVALLVAYPVLLLALAWRVV 1514
[Close]
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: A0A6H5JR60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR60_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.680e-10
Identity = 81/280 (28.93%), Postives = 134/280 (47.86%), Query Frame = 1 
Query:  982 DPASISSRSPSSTLGLLMIFQLQFVSLLRLMEANITKP--FMDFLDSLKWMNLHFEVDISFFNCNDEETRFDWANDDNGTWAL----NTFLVFFLLAVLIVAHILLVSYLEASWLAQANAIHRHRLEFLRRRTAEEAA---------------------APFDGRTEAAYAKYLDAQNQDRDLLEQEK-------LSTERYLK-----RHHSI--WMYFPHVELLFLLFAYQGASAAEARMIYS-GCFPLVVLGLCALIVFPLLMFIYVNRIVWSRVRPD 1695
            +P   S+R PS+TL  +++ QLQF++ L L++  + +     DF+  L+W+NL +  ++   N   +E+ F+     +G  AL    N  LV  +L  +   H+  VS +EA WL +  A  R  L+  RRR A                         +PF  +   A         ++ D+ ++E+       + +E  L      R HS   W++FPHVEL+F  FA++GA A+ A  I +  C  +    + A+++ PLLMF+ V R +  RVRP+
Sbjct:  203 NPPPASNRRPSATLTFVLMTQLQFLATLSLVDYVMDEDSWLADFVTGLRWINLWWLAEVG-QNIASDESAFEAGA--SGIRALVFVGNVALVKGILLAIFFIHVAAVSGVEALWLTKKPA--RENLDAARRRGAPIGELQARLRGVRIICRTNPDLADPSPFSRQAPHASGTLSTLNEEESDMSDEEEGGRGRVPMRSENRLNPVATCREHSTSAWLHFPHVELVFQFFAFEGAVASFASAIRNYECPKIFYTAIAAMVLCPLLMFVTVFRTLLVRVRPN 477
[Close]
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.150e-8
Identity = 83/288 (28.82%), Postives = 131/288 (45.49%), Query Frame = 1 
Query:  994 ISSRSPSSTLGLLMIFQLQFVSLLRLMEANITKPFM--DFLDSLKWMNLH----------------FEVDISFFNCNDEETRFDWANDDNGTWALNTFLVFF-LLAVLIVAHILLVSYLEASWLAQANAIHRHR--------LEFLRRRTAEEAAAPFDGRTE----AAYAKYLDAQNQDRDLLEQEKLSTE----------------------RYLKRHHSIWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVLGLCA-LIVFPLLMFIYVNRIVWSRVRPD 1695
            +S R+PS T+ +L++ Q+QF++ L L+++   +  +  +   +L+W+NL                 F+ D S   C  E T    A+D      L    +F  LL  ++V HI+LVS +EA WL++  A+            +  L  R A   A   D  ++    AA A    A +++    +   +  +                      RY  R  S+W+YFPH+ELLFLLFA++GA A++   +  G  P V    CA L+V+P+LM I   R    RV PD
Sbjct:   43 VSVRAPSVTIAVLLLTQIQFLATLSLVDSTGAEDSLLSELTQNLRWVNLWPPDSVGRTFSSGGERLFQQDGS-RACGIEPTS---ASDIGALVFLGNIGLFTSLLLGIVVIHIVLVSAVEAYWLSKERAMEELTKAQRRGIPIRGLGARRASRVAHSPDAESDPDELAASASNDGAMSREHAAADSVDVGVDFEEDGIPIRSRPKGLRAMLADCRY--RSSSVWLYFPHIELLFLLFAFEGAMASQLATMRGGGCPWVFYSACASLVVYPVLMIILSYRTHRVRVAPD 324
[Close]
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Match: A0A835ZEA4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.150e-8
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1486 KRHHSIWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVLGLCALIVFPLLMFIYVNRIV 1674
            +R  S+W++FPHVELLFLLFAY+GA AA+A M+ S C  LVV  +  L+++P+L+ +   R+V
Sbjct: 1432 QRSRSLWLHFPHVELLFLLFAYEGAVAAQASMLRSPCASLVVASVALLLLYPVLLLLLAWRVV 1494
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10509.714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G3P1_ECTSI4.760e-14677.67Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5LAH5_9PHAE1.940e-13384.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIK9_ECTSI6.790e-3639.03Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
A0A6H5JD90_9PHAE6.000e-1429.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG6_ECTSI5.460e-1330.00Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FWS4_ECTSI4.540e-1228.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZA46_9STRA7.450e-1127.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JR60_9PHAE2.680e-1028.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L9_ECTSI1.150e-828.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZEA4_9STRA9.150e-850.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10509contigS-firma_F_contig10509:650..4633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LIK9
Max annot lvl2759|Eukaryota
Evalue1.11e-36
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Descriptionstructural constituent of cuticle
COG categoryD
Hectar predicted targeting categoryother localisation
Exons7
Model size1767
Cds size1767
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10509.714.1prot_S-firma_F_contig10509.714.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10509 650..4633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.7743125-CDS-S-firma_F_contig10509:649..7871622815586.7743125-CDS-S-firma_F_contig10509:649..787Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 650..787 -
1696949435.9749694-CDS-S-firma_F_contig10509:649..7871696949435.9749694-CDS-S-firma_F_contig10509:649..787Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 650..787 -
1622815586.790312-CDS-S-firma_F_contig10509:1228..14861622815586.790312-CDS-S-firma_F_contig10509:1228..1486Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 1229..1486 -
1696949435.989956-CDS-S-firma_F_contig10509:1228..14861696949435.989956-CDS-S-firma_F_contig10509:1228..1486Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 1229..1486 -
1622815586.8150082-CDS-S-firma_F_contig10509:1820..18771622815586.8150082-CDS-S-firma_F_contig10509:1820..1877Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 1821..1877 -
1696949435.9996567-CDS-S-firma_F_contig10509:1820..18771696949435.9996567-CDS-S-firma_F_contig10509:1820..1877Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 1821..1877 -
1622815586.8287702-CDS-S-firma_F_contig10509:2313..24511622815586.8287702-CDS-S-firma_F_contig10509:2313..2451Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 2314..2451 -
1696949436.0103414-CDS-S-firma_F_contig10509:2313..24511696949436.0103414-CDS-S-firma_F_contig10509:2313..2451Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 2314..2451 -
1622815586.844981-CDS-S-firma_F_contig10509:2709..28561622815586.844981-CDS-S-firma_F_contig10509:2709..2856Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 2710..2856 -
1696949436.01933-CDS-S-firma_F_contig10509:2709..28561696949436.01933-CDS-S-firma_F_contig10509:2709..2856Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 2710..2856 -
1622815586.8571656-CDS-S-firma_F_contig10509:3348..37111622815586.8571656-CDS-S-firma_F_contig10509:3348..3711Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 3349..3711 -
1696949436.0293407-CDS-S-firma_F_contig10509:3348..37111696949436.0293407-CDS-S-firma_F_contig10509:3348..3711Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 3349..3711 -
1622815586.8671734-CDS-S-firma_F_contig10509:3967..46331622815586.8671734-CDS-S-firma_F_contig10509:3967..4633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 3968..4633 -
1696949436.0456748-CDS-S-firma_F_contig10509:3967..46331696949436.0456748-CDS-S-firma_F_contig10509:3967..4633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10509 3968..4633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10509.714.1

>prot_S-firma_F_contig10509.714.1 ID=prot_S-firma_F_contig10509.714.1|Name=mRNA_S-firma_F_contig10509.714.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=589bp
ETPTPVAIVPETPAPVAVVVPETPAPVTAVTTETPAPVSAATPETPAPVT
TDATDVPEAATTPTPATVEGETLPPTTLDGTPSPSFTAEPGTTLTPGATL
PPGATLPPGVTLPPGVTLPPGVTLPGQTLPPGVTLAPVPTEAPANAFLPP
GTTLAPGATLPPGATLVPVAETTPAPTPSTGTESPVTASPTEAFSNVDEV
VDTSGEVVSTTATVAVATTAAAATVTAVTATSTVAATTSTVTSTVSTVAS
AAATGGSAGGTSGAASSGAAGAATATTATTATTATTATTATGGTTSTLAT
TTGAVPDGTGAVNGGTNNVGGSNTMATDPASISSRSPSSTLGLLMIFQLQ
FVSLLRLMEANITKPFMDFLDSLKWMNLHFEVDISFFNCNDEETRFDWAN
DDNGTWALNTFLVFFLLAVLIVAHILLVSYLEASWLAQANAIHRHRLEFL
RRRTAEEAAAPFDGRTEAAYAKYLDAQNQDRDLLEQEKLSTERYLKRHHS
IWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVLGLCALIVFPLLM
FIYVNRIVWSRVRPDHSPLRFEPNPNASKGCFLFKACG*
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mRNA from alignment at S-firma_F_contig10509:650..4633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10509.714.1 ID=mRNA_S-firma_F_contig10509.714.1|Name=mRNA_S-firma_F_contig10509.714.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3984bp|location=Sequence derived from alignment at S-firma_F_contig10509:650..4633- (Sphaerotrichia firma ET2_F female)
GAGACGCCCACCCCCGTCGCCATCGTCCCCGAAACGCCCGCGCCCGTGGC
CGTCGTGGTCCCCGAGACGCCCGCCCCGGTAACCGCCGTGACCACCGAAA
CGCCGGCGCCGGTATCCGCGGCGACCCCCGAGACGCCGGCGCCGGTGACC
ACCGACGCGACCGACGTGCCGGAGGCGGCAACAACGCCCACCCCCGCCAC
GGTGGAAGGCGAGACGCTGCCGCCGACGACGCTGGACGGGACACCGTCCC
CGTCATTCACGGCCGAGCCGGGCACCACGCTAACCCCCGGCGCCACGCTT
CCCCCCGGGGCGACTCTCCCCCCCGGTGTCACGCTTCCCCCGGGCGTCAC
GCTGCCTCCCGGAGTCACGCTTCCAGGACAGACGCTCCCCCCTGGGGTGA
CGCTTGCCCCGGTGCCCACGGAGGCCCCCGCGAACGCGTTTCTTCCTCCT
GGGACTACCCTCGCGCCGGGGGCGACGCTACCCCCCGGCGCCACGCTGGT
TCCCGTCGCCGAGACCACGCCCGCCCCGACTCCGAGCACGGGGACGGAGT
CTCCTGTGACGGCTAGCCCGACCGAGGCATTTTCGAACGTGGATGAGGTG
GTGGATACTTCCGGGGAGGTGGTGTCTACCACGGCGACGGTGGCCGTGGC
GACCACAGCGGCAGCGGTGAGTGGGTGTGTGCGTTTGTGGTGTGGGTGAG
GCAGAGAACGAGGAGTGAGATATTTATGTGGAAGGAATAGATAGCTCTTT
ACCGCGTAGAAGAACGGCTGCTGTGTCTGCCCCCGATCTGTTTCGTCTTG
AACCACCCCAGTTTTTTTTCTGTTGTGTTCCCGCGGCTGATTTGATCTGA
TCTGGTGTGATCTACGCTAGTCTAAGCTTAAGCTTGTGTGGTCTAAATTC
GTCTCCCGTCTCACCGAAACAGGCCACGGTAACGGCAGTGACGGCTACCA
GCACGGTGGCAGCAACAACCTCCACGGTGACATCGACGGTCTCAACGGTT
GCGTCCGCGGCGGCGACGGGGGGCTCCGCAGGGGGAACCTCCGGCGCAGC
CAGCAGCGGCGCCGCAGGCGCCGCCACAGCCACCACGGCAACCACCGCTA
CAACCGCCACCACAGCTACGACAGCCACGGGCGGCACGACCAGCACTTTG
GCGACCACAACGGGAGCCGTGCCCGACGGGACAGGGGCGGTGAACGGAGG
GACGAACAACGTCGGCGGGTCGAACACGATGGCGACGGACCCGGCATCGA
TCTCGTCTCGCAGCCCGTCGTCGACGCTTGGGTTGGTGAGGATCCCCTCT
TTGTTGATTTGGACAGTTGGAGTGGAGGATGGGGGGCATGTAAAAGGGCG
GTCATGGCCTCTGTTTGACTGCTGCTTGCCATGTGGTGTGTGGGCCATTG
TCTACCCTTTCGAGATAAAGCTAGCGATATGCAGCTTTTGTTTTTGTTTC
TCGCGACGAGATAGACCCCTCAAGTTAGGTTACTATCTTTGAGTGTCTTG
CCCGTTCGCTCGCTGCCTTGTAGCTACATGTACCTCGTTCTCGCTTTGCG
CAGCCGCCCCAAAGACTGACACTCCATGTGTATGTCGAACATATCACAGC
TTTGTCGTCTAGACTAGAGTCAGCGCTGGTCTGCGAAACTTTTTGTGTTC
GGCTTCAACTTTTTTTCGCTCCGAGAGCCAAATTCTGATGAAGATCTACC
CCCTCCACAAGCCCTCATGTTTCGTCTCTTGCTGCCTACCCCCGCCGCTC
ATCTCTCCATCTCACGGCCCCCCTCAGCTGATGATCTTCCAGCTGCAGTT
CGTGAGCCTGCTGAGGCTGATGGAGGCGAACATCACCAAGCCCTTCATGG
ACTTCCTCGACAGCCTCAAGTGGATGAACCTCCACTTCGAGGTGGACATC
AGCTTCTTCAACTGCAACGACGAGGTGCGGGGCTCTTTCAAAGAGGACTG
AAGTAGAAACGCCGAGAAGGTCGACAGCAGGCGGGCCCGACCCCTTCGTC
TCCGAAACACGTAGTCCTAATCCTGACAAGAGATGTCGTCGACGCGGGTT
CGGTGCTGGCCCTCAGCTCCAAAAGACAAAGCAGTAGCAGTGGTGCACAC
GCCCCTCCTTGCTTTGCTGACCGGCGTTGCCCTTGTCTTGCTTTTCGCTC
CGACCATGTTTTTCTTTTTTTTGTGACGTCAGGAAACCCGGTTCGACTGG
GCGAACGACGACAACGGCACGTGGGCACTCAACACTTTCCTGGTGTTCTT
CCTGCTGGCGGTGCTCATCGTCGCCCACATCCTCCTCGTCTCGTACCTCG
AGGCCTCGTGGCTCGCTCAGGTGGGTGCGGGCGTTGCATTGATGCAGCAG
TTCCTGGTGAAAGAGAAGCAAGTCAGTCGGTGTGCGCGCGCACGTGCACG
TGTTCGGCGTGAGGTTAGTGCTTGTTCTGTGGCTTCTGCCTCTGACGACT
GGCAGGGAGCGTCGAAAACTAGCCCCGAACGTTGGCTGTGGCGGGGAAGA
CAAGGGCGTACCTCTACCGGTTTCGCAAGGTGGACGCGTCCGCCGCACGA
GGTGGTGGTCGCGCGGGCGCCACCGCTGCTTGCAAGAAGTCTCGTAGTCG
GAAGTCGGCGATAGAGGGCGGGAGAAAGTCTTGCGGCTGTGATGTCGGGT
CTAGCAGCTCCGCGCTACCCGTGCTGCTAACGTTGTGTTGTGGTGGTGTG
TTGACTTAAACATATATCCCCTCCTTGCTCCCCACACACCGCGCCCACCC
GCGCAGGCAAACGCCATTCACAGACATAGGCTGGAGTTCTTGCGCCGGCG
AACTGCGGAAGAGGTGGGTTCGTTTCCTGTTGTTGTTCCCGCTCGTCGTA
GGTGCTGGCTATCTAGTTTTTCGTGCCTTGTGCAACATTTCGCGCGCAAC
GTGTCATTCGGAGAAATATCCAGGTATTCACGTCCCTACCTTGTGCAGCG
GTCAGAGCCGGTCCAAGCCCTCCAGGACCCACAGCTTCCTGGTTCCCGCA
CGAGCTTTAGACCAACGTCGCCTGTCCTACCGCGCATGATGCTCTATTGC
CGGCTTCTGTAAGCCTAAGCACCCTCCGCCCTATGTATTTATGTCCACAC
CCGTTTTGGGGGTCGATTCGTCGCCGTGCTGCCGAATGTCCGCCCAGGCC
GCTGCTCCGTTCGACGGCCGCACGGAAGCCGCGTACGCCAAGTACCTCGA
CGCGCAGAACCAGGACAGGGACCTCCTTGAGCAGGAGAAGCTGTCGACCG
AGCGCTACCTCAAGAGGCACCACTCCATCTGGATGTACTTCCCGCACGTG
GAGCTGCTGTTCCTGCTGTTCGCCTACCAGGGGGCCTCGGCCGCGGAGGC
GAGGATGATCTACTCCGGCTGCTTCCCGCTGGTGGTGCTTGGGCTGTGCG
CTCTGGTGAGAAAAACGAAAGAGGGGGGGGGGAGCGGGCGGCTTGGTCGA
TCGAAGTGCTGGGGGTCGGTCCATCGCTATCCAGTTGCTCGCTTTGATGC
CATTTGTATTTTTCAAAGATGCCGGCCAAGCGTACTTTTCATCGTCTCTG
CTGATTCTAGCCCGCTTTGGGAAGTTGTCGTGACTACCGAAAGCTCGTTC
TGGCCTCGCCCTTCTGTGGCACATCGCTTTCGCCGATGGGAAGCGCAGAC
ACTTTTTTTTTTGTAGCCTTCGGCTCCTTGTTCGTGCTCGCTCGTCGTGG
CTCATCGCGTTTGGTGTACAAATGCAGGCTCGATCCACATTAGTAAGGTA
CTGGTACACACTACCTCTCCGCTTACGACAAGTGCTCGTGCGCTGGCTGA
CTTGTCTGCCCCCACCTTGTATTCCCCGCTCTTCGCCGCCGCGCAGATCG
TGTTCCCCCTGCTGATGTTCATCTACGTGAACCGCATCGTGTGGAGCCGG
GTGCGGCCGGACCACTCTCCCCTTCGCTTCGAGCCCAATCCCAACGCCAG
CAAGGGGTGCTTCCTCTTCAAGGCCTGCGGGTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10509:650..4633-

>mRNA_S-firma_F_contig10509.714.1 ID=mRNA_S-firma_F_contig10509.714.1|Name=mRNA_S-firma_F_contig10509.714.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3534bp|location=Sequence derived from alignment at S-firma_F_contig10509:650..4633- (Sphaerotrichia firma ET2_F female)
GAGACGCCCACCCCCGTCGCCATCGTCCCCGAAACGCCCGCGCCCGTGGC
CGTCGTGGTCCCCGAGACGCCCGCCCCGGTAACCGCCGTGACCACCGAAA
CGCCGGCGCCGGTATCCGCGGCGACCCCCGAGACGCCGGCGCCGGTGACC
ACCGACGCGACCGACGTGCCGGAGGCGGCAACAACGCCCACCCCCGCCAC
GGTGGAAGGCGAGACGCTGCCGCCGACGACGCTGGACGGGACACCGTCCC
CGTCATTCACGGCCGAGCCGGGCACCACGCTAACCCCCGGCGCCACGCTT
CCCCCCGGGGCGACTCTCCCCCCCGGTGTCACGCTTCCCCCGGGCGTCAC
GCTGCCTCCCGGAGTCACGCTTCCAGGACAGACGCTCCCCCCTGGGGTGA
CGCTTGCCCCGGTGCCCACGGAGGCCCCCGCGAACGCGTTTCTTCCTCCT
GGGACTACCCTCGCGCCGGGGGCGACGCTACCCCCCGGCGCCACGCTGGT
TCCCGTCGCCGAGACCACGCCCGCCCCGACTCCGAGCACGGGGACGGAGT
CTCCTGTGACGGCTAGCCCGACCGAGGCATTTTCGAACGTGGATGAGGTG
GTGGATACTTCCGGGGAGGTGGTGTCTACCACGGCGACGGTGGCCGTGGC
GACCACAGCGGCAGCGGAGACGCCCACCCCCGTCGCCATCGTCCCCGAAA
CGCCCGCGCCCGTGGCCGTCGTGGTCCCCGAGACGCCCGCCCCGGTAACC
GCCGTGACCACCGAAACGCCGGCGCCGGTATCCGCGGCGACCCCCGAGAC
GCCGGCGCCGGTGACCACCGACGCGACCGACGTGCCGGAGGCGGCAACAA
CGCCCACCCCCGCCACGGTGGAAGGCGAGACGCTGCCGCCGACGACGCTG
GACGGGACACCGTCCCCGTCATTCACGGCCGAGCCGGGCACCACGCTAAC
CCCCGGCGCCACGCTTCCCCCCGGGGCGACTCTCCCCCCCGGTGTCACGC
TTCCCCCGGGCGTCACGCTGCCTCCCGGAGTCACGCTTCCAGGACAGACG
CTCCCCCCTGGGGTGACGCTTGCCCCGGTGCCCACGGAGGCCCCCGCGAA
CGCGTTTCTTCCTCCTGGGACTACCCTCGCGCCGGGGGCGACGCTACCCC
CCGGCGCCACGCTGGTTCCCGTCGCCGAGACCACGCCCGCCCCGACTCCG
AGCACGGGGACGGAGTCTCCTGTGACGGCTAGCCCGACCGAGGCATTTTC
GAACGTGGATGAGGTGGTGGATACTTCCGGGGAGGTGGTGTCTACCACGG
CGACGGTGGCCGTGGCGACCACAGCGGCAGCGGCCACGGTAACGGCAGTG
ACGGCTACCAGCACGGTGGCAGCAACAACCTCCACGGTGACATCGACGGT
CTCAACGGTTGCGTCCGCGGCGGCGACGGGGGGCTCCGCAGGGGGAACCT
CCGGCGCAGCCAGCAGCGGCGCCGCAGGCGCCGCCACAGCCACCACGGCA
ACCACCGCTACAACCGCCACCACAGCTACGACAGCCACGGGCGGCACGAC
CAGCACTTTGGCGACCACAACGGGAGCCGTGCCCGACGGGACAGGGGCGG
TGAACGGAGGGACGAACAACGTCGGCGGGTCGAACACGATGGCGACGGAC
CCGGCATCGATCTCGTCTCGCAGCCCGTCGTCGACGCTTGGGTTGGCCAC
GGTAACGGCAGTGACGGCTACCAGCACGGTGGCAGCAACAACCTCCACGG
TGACATCGACGGTCTCAACGGTTGCGTCCGCGGCGGCGACGGGGGGCTCC
GCAGGGGGAACCTCCGGCGCAGCCAGCAGCGGCGCCGCAGGCGCCGCCAC
AGCCACCACGGCAACCACCGCTACAACCGCCACCACAGCTACGACAGCCA
CGGGCGGCACGACCAGCACTTTGGCGACCACAACGGGAGCCGTGCCCGAC
GGGACAGGGGCGGTGAACGGAGGGACGAACAACGTCGGCGGGTCGAACAC
GATGGCGACGGACCCGGCATCGATCTCGTCTCGCAGCCCGTCGTCGACGC
TTGGGTTGCTGATGATCTTCCAGCTGCAGTTCGTGAGCCTGCTGAGGCTG
ATGGAGGCGAACATCACCAAGCCCTTCATGGACTTCCTCGACAGCCTCAA
GTGGATGAACCTCCACTTCGAGGTGGACATCAGCTTCTTCAACTGCAACG
ACGAGCTGATGATCTTCCAGCTGCAGTTCGTGAGCCTGCTGAGGCTGATG
GAGGCGAACATCACCAAGCCCTTCATGGACTTCCTCGACAGCCTCAAGTG
GATGAACCTCCACTTCGAGGTGGACATCAGCTTCTTCAACTGCAACGACG
AGGAAACCCGGTTCGACTGGGCGAACGACGACAACGGCACGTGGGCACTC
AACACTTTCCTGGTGTTCTTCCTGCTGGCGGTGCTCATCGTCGCCCACAT
CCTCCTCGTCTCGTACCTCGAGGCCTCGTGGCTCGCTCAGGAAACCCGGT
TCGACTGGGCGAACGACGACAACGGCACGTGGGCACTCAACACTTTCCTG
GTGTTCTTCCTGCTGGCGGTGCTCATCGTCGCCCACATCCTCCTCGTCTC
GTACCTCGAGGCCTCGTGGCTCGCTCAGGCAAACGCCATTCACAGACATA
GGCTGGAGTTCTTGCGCCGGCGAACTGCGGAAGAGGCAAACGCCATTCAC
AGACATAGGCTGGAGTTCTTGCGCCGGCGAACTGCGGAAGAGGCCGCTGC
TCCGTTCGACGGCCGCACGGAAGCCGCGTACGCCAAGTACCTCGACGCGC
AGAACCAGGACAGGGACCTCCTTGAGCAGGAGAAGCTGTCGACCGAGCGC
TACCTCAAGAGGCACCACTCCATCTGGATGTACTTCCCGCACGTGGAGCT
GCTGTTCCTGCTGTTCGCCTACCAGGGGGCCTCGGCCGCGGAGGCGAGGA
TGATCTACTCCGGCTGCTTCCCGCTGGTGGTGCTTGGGCTGTGCGCTCTG
GCCGCTGCTCCGTTCGACGGCCGCACGGAAGCCGCGTACGCCAAGTACCT
CGACGCGCAGAACCAGGACAGGGACCTCCTTGAGCAGGAGAAGCTGTCGA
CCGAGCGCTACCTCAAGAGGCACCACTCCATCTGGATGTACTTCCCGCAC
GTGGAGCTGCTGTTCCTGCTGTTCGCCTACCAGGGGGCCTCGGCCGCGGA
GGCGAGGATGATCTACTCCGGCTGCTTCCCGCTGGTGGTGCTTGGGCTGT
GCGCTCTGATCGTGTTCCCCCTGCTGATGTTCATCTACGTGAACCGCATC
GTGTGGAGCCGGGTGCGGCCGGACCACTCTCCCCTTCGCTTCGAGCCCAA
TCCCAACGCCAGCAAGGGGTGCTTCCTCTTCAAGGCCTGCGGGTAAATCG
TGTTCCCCCTGCTGATGTTCATCTACGTGAACCGCATCGTGTGGAGCCGG
GTGCGGCCGGACCACTCTCCCCTTCGCTTCGAGCCCAATCCCAACGCCAG
CAAGGGGTGCTTCCTCTTCAAGGCCTGCGGGTAA
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