mRNA_S-firma_F_contig10502.709.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10502.709.1
Unique NamemRNA_S-firma_F_contig10502.709.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10502.709.1 vs. uniprot
Match: D7G2K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K4_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 5.090e-32
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    1 MVELQGELVSKDPMSGQPLGSMTSENGKPMLVIANHKLEGKPASEPKPLLVLRKVVVDVNDEN 189
            MVELQGEL+SKDP+SGQPLGSMTSENGK MLVI+NHKLEGK ASEPKPLLVLRKVVVDVNDEN
Sbjct:    1 MVELQGELISKDPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDVNDEN 63
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BLAST of mRNA_S-firma_F_contig10502.709.1 vs. uniprot
Match: A0A0F7SUC4_PHARH (Chromosome transmission fidelity protein 8 n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SUC4_PHARH)

HSP 1 Score: 52.0 bits (123), Expect = 4.320e-6
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 MVELQGELVSKDPMSGQPLGSMTSENGKPMLVIANHKLEGKPASEPKPLLVLRKVVVDVNDENSSSI 201
            ++ELQG + +     GQ +G +  E G+P L I++H L G   + PKPL VLRK  + ++DE    I
Sbjct:   36 LIELQGAIETDGDTDGQLIGKLGLEAGRPTLTISHHLLHGTFVNLPKPLAVLRKAPIIIDDEELEGI 102
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10502.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2K4_ECTSI5.090e-3292.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0F7SUC4_PHARH4.320e-638.81Chromosome transmission fidelity protein 8 n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10502contigS-firma_F_contig10502:3..1956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog5270.UM02935P0
PFAMsCtf8
Max annot lvl4751|Fungi
KEGG koko:K11270
Evalue0.000302
EggNOG OGs2CBTC@1|root,2SBIQ@2759|Eukaryota,3ABDI@33154|Opisthokonta,3P91Q@4751|Fungi,3V31H@5204|Basidiomycota,3N1DF@452284|Ustilaginomycotina
DescriptionCtf8
COG categoryS
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChromosome transmission fidelity protein 8
Ec32 orthologEc-11_002560.1
Exons2
Model size234
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.3886864-CDS-S-firma_F_contig10502:2..1581622815586.3886864-CDS-S-firma_F_contig10502:2..158Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10502 3..158 -
1696949435.656785-CDS-S-firma_F_contig10502:2..1581696949435.656785-CDS-S-firma_F_contig10502:2..158Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10502 3..158 -
1622815586.4003384-CDS-S-firma_F_contig10502:1878..19561622815586.4003384-CDS-S-firma_F_contig10502:1878..1956Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10502 1879..1956 -
1696949435.6881626-CDS-S-firma_F_contig10502:1878..19561696949435.6881626-CDS-S-firma_F_contig10502:1878..1956Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10502 1879..1956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10502.709.1prot_S-firma_F_contig10502.709.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10502 3..1956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10502.709.1

>prot_S-firma_F_contig10502.709.1 ID=prot_S-firma_F_contig10502.709.1|Name=mRNA_S-firma_F_contig10502.709.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=78bp
MVELQGELVSKDPMSGQPLGSMTSENGKPMLVIANHKLEGKPASEPKPLL
VLRKVVVDVNDENSSSINGDSSNDGDGG
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mRNA from alignment at S-firma_F_contig10502:3..1956-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10502.709.1 ID=mRNA_S-firma_F_contig10502.709.1|Name=mRNA_S-firma_F_contig10502.709.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1954bp|location=Sequence derived from alignment at S-firma_F_contig10502:3..1956- (Sphaerotrichia firma ET2_F female)
ATGGTAGAGCTGCAGGGGGAGCTGGTCAGCAAGGACCCGATGTCAGGGCA
GCCTCTGGGGAGCATGACCTCCGAAAACGTGAGTCGTACTTCCTGTGTTT
CTTGAGGTGTATCGAGCCTGGTGGTTCAGCTGAGTCGCTCCTTGTCGGAA
GAGTTGTCGTTGGAGCAGTTTGAACTTTCAACACAAGCAGCCAGGTTTGA
ATTTCAAACTCGCGAGAGTTTTGGAGATGCGGTGGTACCACTCTGTCCCG
CAACATAAGCCCCGTTTGGACATACCGCAATATAAGCCCCGAATGCACAC
ACAGGTGTTAGCGACTCCCCAGGTCTTCTAGAGGCATGGAAATATGTGCA
TATACTGTTGCGAGGGCGCAAGAGAACAAAAAATGTTCACGGTGACCAGG
GGACACCAGGAAACCATCCCCGGATTTTACTGCATGCCCTTTGGTAGCTC
GCGGAGAGAGTCGAGATTAATTAACGCCCTTTTGGCCGCTATGTCCACGG
CGCTTGTTGTGCAGGTCAGGAGACACTACGCCAGCGGCCTTCTGACGCTC
TTACCCTTTCCACAACTCAGCGATTGTCCATCGGTTGGTCCCATACAGCA
GTGCAACTCTAGTTTTGTCGCCCTTCCGCAGAACCCCGTTGTTGCTCCCT
TTGAGAAGCTCGACAATCACAGCGCTTCGCTCTGCATTGTCGAGATGCTT
GCTCTTTGGTGTCTCGTGAACACTTTGAGCGCTACACATGCTCCTTCGCA
CTATCGGAAGGCCTTTTTTAACCACTTGGGGAAAAGCGAGCTCCGCAAGC
AACGGCTTGGTGTTGGTGTGTGGGTGCCGGAGTGTTACCTTGTTAAAAAA
ACACCGCTGTTTTGTTCAGGCGGGAGCGGCCCGATGACGATGAAAAAAAC
CGCTTCGGAAAAGGATACGTACAGCAGTAGTTGCGCCATATTTTGTCCAA
ACGGGGCTTATATTGCGGGACAGGTGGTACTCCGTAGCGTGGGAGATGAA
GTTGGTCGAATACAGCAGTACCCTCCAAATGGTCACCAGTACCGTAATCG
TGGTAGGTGCTATTATTGCCATTGCAGTCTGGTCGTGAAGCTGTGTGCGA
GTTTGCTTCCCCCTACATAGGCCTGGTTTTGGCACTGGTGAAGCTGCAGC
AGCAGTAGACCGCAGTAGTTATTAAGTCACCACATCAGGCCGTTAGGAAT
TCTGGCTCGCGCGCAGAGTGGAAATGGCCATGCTTCAGTCGGCAAAGGCC
CACGTTCTAATGGAAGTCCTCAACGGATGTCAATTGCCGGAGCCCCATGA
AACTGACCATAGAAGTGTTGAAGATGCAGATAGATGACAGCAGGACCTCA
ACAACAGGCAGGTTGACAAGCGCCAACACGCACCGTTGACTCATGCATGT
GTAGCTCACCTCTCTTGGACTCTTGGTGAAGGTCTTCCTCCATCATCCAG
GCCCGTTCCTTTTCGGTTCCGGAGATACCGTAGGTCGCGGCAGATCCCGC
ACCCCAGGACAAAGCAATTTCTACCGCGATTTTTAAGGCGTGCTTTCCGA
AGATTTGTGGGTAGATGGATGGTTTTTTCTCATTGACGTGGAGGAACGGA
GATATGGGCGTCATGTGGCATACTTACGGTTCCCTGCATGCACGGATGTC
TTCCGCCGCCACGTCCTAGCTTCGCCTGTGATTCCGACCCTGGTGCACTG
ATGGCACCAAATCCATGTAAATATTTCGTGCGGTGACCTCACAGCTGCCC
CCGTCCTATCCCCTACCCCGTCGAAATCTCCCGCACTCGGTTGCACAGGG
AAAACCAATGTTGGTGATCGCCAACCACAAGCTGGAGGGAAAGCCAGCCT
CGGAGCCGAAGCCTCTCCTCGTCCTGAGAAAGGTCGTCGTCGACGTTAAC
GACGAGAACAGCAGCAGCATCAACGGCGACAGCAGCAACGACGGCGACGG
TGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10502:3..1956-

>mRNA_S-firma_F_contig10502.709.1 ID=mRNA_S-firma_F_contig10502.709.1|Name=mRNA_S-firma_F_contig10502.709.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=468bp|location=Sequence derived from alignment at S-firma_F_contig10502:3..1956- (Sphaerotrichia firma ET2_F female)
ATGGTAGAGCTGCAGGGGGAGCTGGTCAGCAAGGACCCGATGTCAGGGCA
GCCTCTGGGGAGCATGACCTCCGAAAACATGGTAGAGCTGCAGGGGGAGC
TGGTCAGCAAGGACCCGATGTCAGGGCAGCCTCTGGGGAGCATGACCTCC
GAAAACGGAAAACCAATGTTGGTGATCGCCAACCACAAGCTGGAGGGAAA
GCCAGCCTCGGAGCCGAAGCCTCTCCTCGTCCTGAGAAAGGTCGTCGTCG
ACGTTAACGACGAGAACAGCAGCAGCATCAACGGCGACAGCAGCAACGAC
GGCGACGGTGGGGGAAAACCAATGTTGGTGATCGCCAACCACAAGCTGGA
GGGAAAGCCAGCCTCGGAGCCGAAGCCTCTCCTCGTCCTGAGAAAGGTCG
TCGTCGACGTTAACGACGAGAACAGCAGCAGCATCAACGGCGACAGCAGC
AACGACGGCGACGGTGGG
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