mRNA_S-firma_F_contig10501.708.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10501.708.1 vs. uniprot
Match: A0A6H5L1B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B7_9PHAE) HSP 1 Score: 466 bits (1200), Expect = 6.540e-153 Identity = 326/667 (48.88%), Postives = 379/667 (56.82%), Query Frame = 1
Query: 193 MTVTLNRDEGSEEPAAT------------------GAGVGAAKHISAAKATA-KPRSNADCL--GSSGAGVGTRDDNGV------GAGKRSRPNPEGNAPSNNVAGAAGRAALGASARQFLRRYHHHVAFRRLSPPITETETVEMPVPLYPTCLDVCGCMVAVGTREGPVLLFDAGPRPSGAIRPSSIEGSKPRAVATDGTAAASTSSSMLGGSTSRDGSSRRIRHGVSATNEVSAAGAATSISAXXXSGGAGGDRGSAASVTRVYGSLADGTGPISSVILDRAKVIAAGRGSRRSGGGYVIRIYAVDSTRLLRTLRCVSEVSRMCLFDPVLAVLSSGSGSLSFRDLYADGGSGLGQRTTPGVSAVAFAAVERQTV------------ITSGVSRNPQDQSGNNDHDVHVVLHCVDSSGIMFEASTFGFVWNAERDSSRPADVPAETAAERRG--WHVCADLEASLVVRATPWGNVSGWRLRPSGRRARGPIFSFGLGFS-SASPSPIARRLTSVALAAGGLILATASEGTGPKLWDLRLARRSQRWTLASEAPLAEGGGAXXXXXXAGEHQ---------------------------------AAAPDGVRTGDAND-GGRVQGRTRARAREVRPWPAGAWAVGVAVDAGSGRLVSACSDGRMRI 1965
MTV L RDEG E P SA +ATA +PRSNADCL G+ GV + G GAG R R A A + R+FLRRY+HHVAFRRL+PP+T TET++ PVPLYPTCLD CG MVA+GTREGPVLLF S DG A +++ G S ++R G +AT + AG++ GS ASVTR YGSLADGTGP ++V++DRAKVIAAGRGSRRSGGG+VIRIYAVDSTRLLRTLRC+SEVSRM LFDPVLAVLS GSG LSFRDLYADGG GLGQRT GVSA AFAAVE +G R + G VLHCV+S+G +FEAST G WN+E + ++ A+ AA G WHVCADLEASL+V ATPWG +SGWRL PSGRRARGPIF FGLG S SASPSP +R LTS++L AGGLILAT++EG P+LWD+RL RR W LA++ G G G + +G R DA+ GGRV RAR VRPWP G WAVGVA +AGSGRLVSACSDGRMR+
Sbjct: 1 MTVNLTRDEGYEPPLNAPRRPQHDESSRKAXXXXXXXXXXXXXRASAPRATATRPRSNADCLLGGTGAVGVASSPPAGCYGGGASGAGTRKRNRAAXXXXXXXTASGA------TARRKFLRRYYHHVAFRRLTPPVTNTETIDTPVPLYPTCLDTCGNMVALGTREGPVLLFHT-TNGSXXXXXXXXXXXXXSGSYRDGAPLALETNAAAGRSAMTPPAARAP--GKAATPTTALAGSSNRS-------------GSTASVTRAYGSLADGTGPTTAVLVDRAKVIAAGRGSRRSGGGFVIRIYAVDSTRLLRTLRCLSEVSRMSLFDPVLAVLSLGSGRLSFRDLYADGGGGLGQRTAMGVSAAAFAAVEGHLTNNXXXXXXXXXXXXTGTIRPDYNGDGT------TVLHCVNSTGTVFEASTSGAAWNSELIAPGGSEGGADPAAAAAGGRWHVCADLEASLLVLATPWGAISGWRLNPSGRRARGPIFCFGLGSSCSASPSPSSRPLTSMSLTAGGLILATSAEGAPPRLWDMRLTRRRCGWGLAADGGGPSGAGGARASGLRGTPAGGRGXXXXXXXXXXXXXXXXXXXXXXXGAVAAGSTRQEGSRADDADSRGGRVAAG-RARYVGVRPWPVGIWAVGVAANAGSGRLVSACSDGRMRL 638
BLAST of mRNA_S-firma_F_contig10501.708.1 vs. uniprot
Match: D7FPS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS2_ECTSI) HSP 1 Score: 291 bits (745), Expect = 3.140e-89 Identity = 202/418 (48.33%), Postives = 233/418 (55.74%), Query Frame = 1
Query: 37 MEPHPPPSRSLPLHVVVTVLQFAVPEILSLGEARVLCRGAASALAYPPFWRGMTVTLNRDEGSEEPAATGAGVG---AAKHISAA---------------KATA-KPRSNADCLGSSGAGVGTRDDNGVGAGKRSRPNPEGNAPSNNVAGAAGRAAL----------------GASARQFLRRYHHHVAFRRLSPPITETETVEMPVPLYPTCLDVCGCMVAVGTREGPVLLFDAGPRPSGAIRPSSIEGSKPRAVATDGTAAASTSSSMLGGSTSRDGSSRRIRHGVSATNEVSAAGAATSISAXXXSGGAGGDRGSAASVTRVYGSLADGTGPISSVILDRAKVIAAGRGSRRSGGGYVIRIYAVDSTRLLRTLRCVSEVSRMCLFDPVLAVLSSGSGSLSFRDLYADGGSGLGQR 1185
M+P P PS LPLHVVVTVLQFAVPE++SL EAR+LC+GA+S+LA P FWRGMTV L RDEG E P + ++ +SA +ATA +PRSN DCL G GV AG S P P G ++GA R + RQFLRRYHHHVAFRRL+PP+T TET++ PVPLYPTCLD C V + A+T ++ L S++R S+ ASVTRVYGSLADGTGP ++V+LDRAKVIAAGRGSRRSGGG+VIRIYAVDSTRLLRTLRCVSEVSRM LFDPVLAVLS GSG LSFRDLYADGG GLGQR
Sbjct: 1 MDPGPSPSSRLPLHVVVTVLQFAVPEVVSLSEARLLCKGASSSLASPSFWRGMTVNLTRDEGYEPPLNSPRRPQHDESSSKVSAXXXXXXXXXXXXXXXXRATATRPRSNVDCL-LGGIGV---------AGLASSP-PAGCHGGGAISGAGTRKXXXXXXXXXXXXXXXXXXATAGRQFLRRYHHHVAFRRLTPPVTSTETIDTPVPLYPTCLDACAAAARVPGK-------------------------------------AATPTTALNRSSNRSEST--------------------------------------ASVTRVYGSLADGTGPTTAVLLDRAKVIAAGRGSRRSGGGFVIRIYAVDSTRLLRTLRCVSEVSRMSLFDPVLAVLSWGSGRLSFRDLYADGGGGLGQR 332 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10501.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10501.708.1 >prot_S-firma_F_contig10501.708.1 ID=prot_S-firma_F_contig10501.708.1|Name=mRNA_S-firma_F_contig10501.708.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=689bp SHNPAFHAPFFGMEPHPPPSRSLPLHVVVTVLQFAVPEILSLGEARVLCRback to top mRNA from alignment at S-firma_F_contig10501:154..4705- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10501.708.1 ID=mRNA_S-firma_F_contig10501.708.1|Name=mRNA_S-firma_F_contig10501.708.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4552bp|location=Sequence derived from alignment at S-firma_F_contig10501:154..4705- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10501:154..4705- >mRNA_S-firma_F_contig10501.708.1 ID=mRNA_S-firma_F_contig10501.708.1|Name=mRNA_S-firma_F_contig10501.708.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4134bp|location=Sequence derived from alignment at S-firma_F_contig10501:154..4705- (Sphaerotrichia firma ET2_F female)back to top |