mRNA_S-firma_F_contig105.699.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig105.699.1
Unique NamemRNA_S-firma_F_contig105.699.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig105.699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig105contigS-firma_F_contig105:32837..33161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LL12
PFAMsAnk,Ank_2
Max annot lvl2759|Eukaryota
KEGG koko:K21440
Evalue2.82e-05
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
COG categoryI
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size326
Cds size129
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.3715482-UTR-S-firma_F_contig105:32836..330321622815585.3715482-UTR-S-firma_F_contig105:32836..33032Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 32837..33032 +
1696949434.8807003-UTR-S-firma_F_contig105:32836..330321696949434.8807003-UTR-S-firma_F_contig105:32836..33032Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 32837..33032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.3829339-CDS-S-firma_F_contig105:33032..331611622815585.3829339-CDS-S-firma_F_contig105:33032..33161Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 33033..33161 +
1696949434.8948913-CDS-S-firma_F_contig105:33032..331611696949434.8948913-CDS-S-firma_F_contig105:33032..33161Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 33033..33161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig105.699.1prot_S-firma_F_contig105.699.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig105 33033..33161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig105.699.1

>prot_S-firma_F_contig105.699.1 ID=prot_S-firma_F_contig105.699.1|Name=mRNA_S-firma_F_contig105.699.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=43bp
MANRDGREALRGAGGKTFDLLAELLTSEQLAELLEAPQQRAAF
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mRNA from alignment at S-firma_F_contig105:32837..33161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig105.699.1 ID=mRNA_S-firma_F_contig105.699.1|Name=mRNA_S-firma_F_contig105.699.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=325bp|location=Sequence derived from alignment at S-firma_F_contig105:32837..33161+ (Sphaerotrichia firma ET2_F female)
GATTCCCACAGCCGCTGCGCCGTGTGCATGCATTCCGTGGTCCTTGCTTA
ATTTGATCGGGTAGGAGGCTCATACGTACGCTGCTACCCCACGAACTAAC
TGTAAATCGACAGAGAGGGCTCTAGCAGTGAGCGACCAGCACCACCCTGG
TGCTGTGCACGTCGTTGTGGTAATTTTTTAATTAACAACAGGCAGCATGG
CAAACAGGGATGGACGTGAAGCACTTCGAGGAGCAGGGGGGAAGACATTC
GATCTCCTCGCCGAACTCTTGACATCAGAACAGTTGGCGGAGTTGCTGGA
AGCTCCACAGCAGCGTGCCGCATTC
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Coding sequence (CDS) from alignment at S-firma_F_contig105:32837..33161+

>mRNA_S-firma_F_contig105.699.1 ID=mRNA_S-firma_F_contig105.699.1|Name=mRNA_S-firma_F_contig105.699.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=258bp|location=Sequence derived from alignment at S-firma_F_contig105:32837..33161+ (Sphaerotrichia firma ET2_F female)
ATGGCAAACAGGGATGGACGTGAAGCACTTCGAGGAGCAGGGGGGAAGAC
ATTCGATCTCCTCGCCGAACTCTTGACATCAGAACAGTTGGCGGAGTTGC
TGGAAGCTCCACAGCAGCGTGCCGCATTCATGGCAAACAGGGATGGACGT
GAAGCACTTCGAGGAGCAGGGGGGAAGACATTCGATCTCCTCGCCGAACT
CTTGACATCAGAACAGTTGGCGGAGTTGCTGGAAGCTCCACAGCAGCGTG
CCGCATTC
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