mRNA_S-firma_F_contig10499.692.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10499.692.1
Unique NamemRNA_S-firma_F_contig10499.692.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10499.692.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 1.290e-72
Identity = 121/155 (78.06%), Postives = 127/155 (81.94%), Query Frame = 1 
Query:    1 GVIHYYPYDGEKETRPAARLDEEDDESITIEAFWEGRLVPESHAAALSFFPPSKLNKKERETLGSSWRRRIKGMLFVDWNFPISNNKLKLQFPEGDLNTALNAKYVLPKPPA-------------EFREWLIKCHETLDIEYRFDDKMPTPQNSK 426
            GVIHYYPYDGEKETRP  R DEEDDESITIEAFWEGRLVPESHAA L FFP  K NKKERE LG+SWRRRIKGMLF DWNFPISNNKLKLQF EGDL+TALNA Y+ PK PA             EFREWLIKCHETLD+EYRFDDKMP+P +SK
Sbjct:  450 GVIHYYPYDGEKETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNANYLPPKHPAVIYPGVRGRNIQKEFREWLIKCHETLDVEYRFDDKMPSPASSK 604
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BLAST of mRNA_S-firma_F_contig10499.692.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.570e-20
Identity = 46/54 (85.19%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 GVIHYYPYDGEKETRPAARLDEEDDESITIEAFWEGRLVPESHAAALSFFPPSK 162
            GVIHYYPYDGE ETRP  R DEEDDESITIEAFWEGRLVPESHAA L FFP  K
Sbjct:  483 GVIHYYPYDGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHK 536
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BLAST of mRNA_S-firma_F_contig10499.692.1 vs. uniprot
Match: A0A059LHT2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LHT2_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 1.370e-8
Identity = 37/116 (31.90%), Postives = 58/116 (50.00%), Query Frame = 1 
Query:   88 IEAFWEGRLVPESHAAALSFFPPSKLNKKE--RETLGSSWRRRIKGMLFVDWNFPISNNKLKLQFPEGDLNTALNAKYVLPKPPA-EFREWLIKCHETLDIEYRFDDKMPTPQNSK 426
             E +WEGRL+P +   +L F   ++  KKE   +        R++G LFVD +F ++ NKL    P   L   L+    + +  A +F+EWL +CH TLD  + F   +     +K
Sbjct:  418 FEVYWEGRLIPAAVVESLDFIDRARPKKKELKNDAPPEEAFMRLRGTLFVDASFKVTKNKLMFAQP---LAALLSGSQGVSRSLARDFKEWLARCHRTLDRSWCFSGPLDARHQAK 530
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BLAST of mRNA_S-firma_F_contig10499.692.1 vs. uniprot
Match: A0A6A5BHS3_NAEFO (SMC hinge domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BHS3_NAEFO)

HSP 1 Score: 60.5 bits (145), Expect = 7.080e-8
Identity = 43/147 (29.25%), Postives = 66/147 (44.90%), Query Frame = 1 
Query:    1 GVIHYYPYDGEKETRPAAR-----------LDEE---DDESITIEAFWEGRLVPESHAAALSFFPPSKLNKKERETLGSSWRRRIKGMLFVDWNFPISNNKLKLQFPEGDLNTALNAKYVLPKPPAEFREWLIKCHETLDIEYRFDD 399
            G+I+YYP+   +ET P               D+E    + +   E FW GRL+       L +    + N+     +  +  RR+KGMLF D+ F +S NK+ L          LN  Y        +R+W+ +CH+ LD E  FD+
Sbjct:  657 GIIYYYPFKQGRETLPIPEELYLEGGKYVPTDQEVPLSERNPGFECFWNGRLLANEKIKNLPWMEKERSNRD----IPDNCYRRVKGMLFFDYAFEVSANKMYLCKQTPLCQALLN--YTDRTLMQRYRKWIKECHKKLDEEIIFDE 797
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BLAST of mRNA_S-firma_F_contig10499.692.1 vs. uniprot
Match: A0A2P6V3P3_9CHLO (Structural maintenance of chromosomes flexible hinge domain-containing 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V3P3_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.140e-6
Identity = 34/105 (32.38%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:   88 IEAFWEGRLVPESHAAALSFFPP--SKLNKKERETLGSSWRRRIKGMLFVDWNFPISNNKLKLQFPEGDLNTALNAKYVLPKPPAEFREWLIKCHETLDIEYRFD 396
             EAFW+GRL+P +    L F      K N + ++ +     RR++G LF    F ++ NKL   F +        A     +  A+F++WL +CH TLD   RF+
Sbjct:  542 FEAFWQGRLIPGARIDTLPFVESVRQKRNAQAKDVIPDEAFRRLRGALFFGPAFRVTRNKLL--FRDNLAEVLAGAVPGERQMEAKFKQWLQRCHSTLDKSVRFE 644
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BLAST of mRNA_S-firma_F_contig10499.692.1 vs. uniprot
Match: A0A2P6TW64_CHLSO (Structural maintenance of chromosomes flexible hinge domain-containing 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TW64_CHLSO)

HSP 1 Score: 54.7 bits (130), Expect = 7.220e-6
Identity = 33/105 (31.43%), Postives = 51/105 (48.57%), Query Frame = 1 
Query:   88 IEAFWEGRLVPESHAAALSFFPP--SKLNKKERETLGSSWRRRIKGMLFVDWNFPISNNKLKLQFPEGDLNTALNAKYVLPKPPAEFREWLIKCHETLDIEYRFD 396
             EAFW+GRL+P +    L F      K   + ++ +     RR++G LF    F ++ NKL   F +        A     +  A+F++WL +CH TLD   RF+
Sbjct:  514 FEAFWQGRLIPGARIDTLPFVEAVRQKRTAQAKDVIPDEAFRRLRGALFFGPAFRVTRNKLL--FRDNLAEVLAGAVPGERQMEAKFKQWLQRCHSTLDKSVRFE 616
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BLAST of mRNA_S-firma_F_contig10499.692.1 vs. uniprot
Match: E1Z3V7_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z3V7_CHLVA)

HSP 1 Score: 53.9 bits (128), Expect = 1.330e-5
Identity = 43/123 (34.96%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:   58 LDEEDDE-------SITI-EAFWEGRLVPESHAAALSFFPPSKLNKKERETLGSSWRRRIKGMLFVDWNFPISNNKLKLQ--FPEGDLNTALNAKYVLPKPPAEFREWLIKCHETLDIEYRFD 396
            LDE  DE       S+ I EAFW+GRL+P +    L F         E + +     RR++G LF    F ++ NKL  +   PE  L TA+  +  +    A+ R+WL +CH TLD   RF+
Sbjct:  494 LDEXXDEEAQGGWQSVPIFEAFWQGRLIPGARIDTLPFL--------EADMIPDEAFRRLRGALFFGPAFRVTRNKLLFRDSLPEV-LATAVPGERQME---AKLRQWLQRCHSTLDKSVRFE 604
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10499.692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JXR4_9PHAE1.290e-7278.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFL9_ECTSI2.570e-2085.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A059LHT2_9CHLO1.370e-831.90Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
A0A6A5BHS3_NAEFO7.080e-829.25SMC hinge domain-containing protein n=1 Tax=Naegle... [more]
A0A2P6V3P3_9CHLO1.140e-632.38Structural maintenance of chromosomes flexible hin... [more]
A0A2P6TW64_CHLSO7.220e-631.43Structural maintenance of chromosomes flexible hin... [more]
E1Z3V7_CHLVA1.330e-534.96Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10499contigS-firma_F_contig10499:1193..3196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog45351.EDO40062
PFAMsHATPase_c_3
Max annot lvl2759|Eukaryota
Evalue3.49e-23
EggNOG OGs28J2Q@1|root,2QREW@2759|Eukaryota,38CQ2@33154|Opisthokonta,3BH6M@33208|Metazoa
DescriptionStructural maintenance of chromosomes flexible hinge
COG categoryS
Hectar predicted targeting categoryother localisation
Exons4
Model size426
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10499.692.1prot_S-firma_F_contig10499.692.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10499 1193..3196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.3586757-CDS-S-firma_F_contig10499:1192..13561622815584.3586757-CDS-S-firma_F_contig10499:1192..1356Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10499 1193..1356 +
1696949434.1600285-CDS-S-firma_F_contig10499:1192..13561696949434.1600285-CDS-S-firma_F_contig10499:1192..1356Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10499 1193..1356 +
1622815584.370738-CDS-S-firma_F_contig10499:2037..22091622815584.370738-CDS-S-firma_F_contig10499:2037..2209Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10499 2038..2209 +
1696949434.171212-CDS-S-firma_F_contig10499:2037..22091696949434.171212-CDS-S-firma_F_contig10499:2037..2209Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10499 2038..2209 +
1622815584.3833025-CDS-S-firma_F_contig10499:2248..22811622815584.3833025-CDS-S-firma_F_contig10499:2248..2281Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10499 2249..2281 +
1696949434.1830413-CDS-S-firma_F_contig10499:2248..22811696949434.1830413-CDS-S-firma_F_contig10499:2248..2281Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10499 2249..2281 +
1622815584.3984058-CDS-S-firma_F_contig10499:3139..31961622815584.3984058-CDS-S-firma_F_contig10499:3139..3196Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10499 3140..3196 +
1696949434.191906-CDS-S-firma_F_contig10499:3139..31961696949434.191906-CDS-S-firma_F_contig10499:3139..3196Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10499 3140..3196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10499.692.1

>prot_S-firma_F_contig10499.692.1 ID=prot_S-firma_F_contig10499.692.1|Name=mRNA_S-firma_F_contig10499.692.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=142bp
GVIHYYPYDGEKETRPAARLDEEDDESITIEAFWEGRLVPESHAAALSFF
PPSKLNKKERETLGSSWRRRIKGMLFVDWNFPISNNKLKLQFPEGDLNTA
LNAKYVLPKPPAEFREWLIKCHETLDIEYRFDDKMPTPQNSK
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mRNA from alignment at S-firma_F_contig10499:1193..3196+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10499.692.1 ID=mRNA_S-firma_F_contig10499.692.1|Name=mRNA_S-firma_F_contig10499.692.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2004bp|location=Sequence derived from alignment at S-firma_F_contig10499:1193..3196+ (Sphaerotrichia firma ET2_F female)
GGAGTCATCCACTACTACCCGTACGACGGTGAGAAGGAGACCAGGCCGGC
GGCGAGGCTGGACGAGGAGGACGACGAGTCCATCACCATAGAGGCGTTTT
GGGAGGGCCGGTTGGTGCCGGAGAGCCACGCCGCGGCGCTTTCGTTCTTC
CCGCCGTCGAAGCTGTGAGTGTCGTATGATAGTATCGTAGTATCGCATCG
TACAACGATCTTGCGTTTTGTGCCGGTTGGATCGCACGAGCTGGTGCTGG
TAACTTCGTATATGTTTTAGTATGTAGTCGGGTCCTGCCCCCGAAAAAAA
AAATGAAACACCTTTCGACTGTCTGCGGATCGTGGTTGTGAGTTGCCCCG
CGGTTGTGTCGGCGTGTGGCGTTGTCTGCCGAGGTGTGTCGCCGTGTGTA
CGTACGGCACATGTTCCAGACCAGACCAAAAACCAGCGACAGCGTACGAA
ATGCACTTTCAACTTTGCAGCAGAAGAAAGAGAACAGCCAGATCAAAAGT
ATCTACGGCCCTCAGAACCCTCGCGAACCTACTTCTATGATATTTCCCGG
GAGCCCTTGGATGCAGTCGAATCGATCATTTCGTGTACTACTGTAGTTCG
CTGTTGGTGTCGGTGTTGATTTCGCAACTGGCGGCCGATCGGACTTGCGT
TTGTTCTCTCCCGCTCTTTGCATCGTTTGACCGCCCGTACCGTGTCTGCC
GAGACTTGGCGTTGATGGGTCATTTGTCATGTCTATATCATGTCTATATC
ATGTCTATATCATATCTATATCATGTCTATATCATGTATATATATATCAT
GTATATATCATGTTATATCACGTGTGTCATAAACCATGCATCCAGGAACA
AGAAGGAGAGGGAGACGCTGGGCTCGAGCTGGAGACGCCGCATCAAGGGG
ATGCTCTTCGTCGACTGGAACTTCCCCATCAGCAACAACAAGCTCAAGCT
GCAGTTCCCGGAGGGGGACTTGAACACGGCGCTCAACGCCAAGTACGTCC
TGCCGAAGCCCCCGGCGGTGATCTACCCCGGGGTGCGCGGACGCAACATC
CAGAAGGAGTTCCGGGAGTGGCTCATCAAGTGCCACGAGGTAGGGGATGA
TGCAGCAGTCAGTATCGTTAAAAAAAAAAGTGGTTTGAAGGACGAGGGCG
GCTTTGTGTTTTGCTCTCTCGTGTTGAAGTGCCACGAGGTAGGGGATGAT
GCAGCAGTCAATGTCGTTCCAAAAAAAAATGGTTGAAGAACGAGGGCGGC
TTTGTGTTTTGCTCTCTCCTCGTGTTCAAGTGCCGCGAGGTAGGGGATGA
TGCAGCGGTCAGTATCGTTCCAAAAAAAAACGGTTGAGGACGAGGGCGGC
TTTGTGTTTTGCTCCCTCCTCGTGTTGTTCGTTTGTTCGCTGCTCGTGTT
GTGTGTCTCGATGCCGCGTCTTGCATCTTGCCGTCCTCTCCGCCTCACGT
TCAGAGTGTAGTTGTCCCTCCCTCGGAGGGCGCGTCATGTTGGAGGGAGG
GAATGTCGTGACCCAGTGTCCCGCCCTACGATAGTTACGCTATTTCCGAG
CAGCATGAATCCTACTTTTTGATTTAGCGCCAGCGAATCGCAAGACCATT
TTTCTGAGTTTCTTTGCGGCGACGATTGTGCCCAGTTTCTGTGGCCACGG
GCTCCCATGGATGTTTTTTTATAATTTTTCTACATACTTCAGCCGTATAC
GTCTATCCTGTGAATAAGTCGTTCCAGGGGGACTGTTGTATACACACAAC
CCTCCCCGTCCCAGCCAACAGCACAACATCCGCAATCCGCTAGGTTTGTT
GGTTGCTTATTTTCTTCGTCGCTTGTTTGTGGATGTTTTTGGAATATAGA
GCTAGTGTGAGAAACAAACAAACAAAAAAACGCCCGTGACGCCTCTTGTC
TGTTCGCTGTTCGTTTTTGTTCGTTTCGTTTGATCTCCCTCCCCAAGACG
CTGGACATCGAGTACCGTTTCGACGACAAGATGCCCACGCCTCAGAACTC
CAAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10499:1193..3196+

>mRNA_S-firma_F_contig10499.692.1 ID=mRNA_S-firma_F_contig10499.692.1|Name=mRNA_S-firma_F_contig10499.692.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=852bp|location=Sequence derived from alignment at S-firma_F_contig10499:1193..3196+ (Sphaerotrichia firma ET2_F female)
GGAGTCATCCACTACTACCCGTACGACGGTGAGAAGGAGACCAGGCCGGC
GGCGAGGCTGGACGAGGAGGACGACGAGTCCATCACCATAGAGGCGTTTT
GGGAGGGCCGGTTGGTGCCGGAGAGCCACGCCGCGGCGCTTTCGTTCTTC
CCGCCGTCGAAGCTGGAGTCATCCACTACTACCCGTACGACGGTGAGAAG
GAGACCAGGCCGGCGGCGAGGCTGGACGAGGAGGACGACGAGTCCATCAC
CATAGAGGCGTTTTGGGAGGGCCGGTTGGTGCCGGAGAGCCACGCCGCGG
CGCTTTCGTTCTTCCCGCCGTCGAAGCTGAACAAGAAGGAGAGGGAGACG
CTGGGCTCGAGCTGGAGACGCCGCATCAAGGGGATGCTCTTCGTCGACTG
GAACTTCCCCATCAGCAACAACAAGCTCAAGCTGCAGTTCCCGGAGGGGG
ACTTGAACACGGCGCTCAACGCCAAGTACGTCCTGCCGAAGCCCCCGGCG
GAACAAGAAGGAGAGGGAGACGCTGGGCTCGAGCTGGAGACGCCGCATCA
AGGGGATGCTCTTCGTCGACTGGAACTTCCCCATCAGCAACAACAAGCTC
AAGCTGCAGTTCCCGGAGGGGGACTTGAACACGGCGCTCAACGCCAAGTA
CGTCCTGCCGAAGCCCCCGGCGGAGTTCCGGGAGTGGCTCATCAAGTGCC
ACGAGGAGTTCCGGGAGTGGCTCATCAAGTGCCACGAGACGCTGGACATC
GAGTACCGTTTCGACGACAAGATGCCCACGCCTCAGAACTCCAAGACGCT
GGACATCGAGTACCGTTTCGACGACAAGATGCCCACGCCTCAGAACTCCA
AG
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