mRNA_S-firma_F_contig1049.687.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1049.687.1
Unique NamemRNA_S-firma_F_contig1049.687.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1049.687.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.660e-40
Identity = 79/105 (75.24%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:   29 MSRFAKFATGLRDFGNDINANISKALNISKEPEDPNQILLQEAKAGRAFGLEAILEEFGPAASVNGALDSSFHSPLSLACRGGHEEAALFLLRRAGADPNNALGA 343
            MSRFAKFATGLR+FGNDINANISKAL+ISKE EDP+ +LL+EA+AGR  GL+A L+ F     VNGALD SF SPL LACRGGHEEAAL LL RA ADPNNA GA
Sbjct:    1 MSRFAKFATGLREFGNDINANISKALSISKESEDPSSVLLEEARAGRVDGLKACLDNFASRTDVNGALDRSFLSPLCLACRGGHEEAALLLLHRANADPNNATGA 105
[Close]
BLAST of mRNA_S-firma_F_contig1049.687.1 vs. uniprot
Match: D8LGY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY9_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.510e-24
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 2 
Query:   29 MSRFAKFATGLRDFGNDINANISKALNISKEPEDPNQILLQEAKAGRAFGLEAILEEFGPAASVNG 226
            MSRFAKFATGLR+FGNDIN NISKALNISK  EDPN ILL+EA+AGR  GL+A L++F     VNG
Sbjct:    1 MSRFAKFATGLREFGNDINVNISKALNISKVSEDPNSILLEEARAGRVDGLKACLDDFASRTDVNG 66
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1049.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYH1_9PHAE2.660e-4075.24Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LGY9_ECTSI6.510e-2472.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1049contigS-firma_F_contig1049:14145..16240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001400.1
Exons2
Model size360
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1049.687.1prot_S-firma_F_contig1049.687.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1049 14145..16212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.8636749-CDS-S-firma_F_contig1049:14144..143841622815583.8636749-CDS-S-firma_F_contig1049:14144..14384Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 14145..14384 -
1696949433.8853235-CDS-S-firma_F_contig1049:14144..143841696949433.8853235-CDS-S-firma_F_contig1049:14144..14384Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 14145..14384 -
1622815583.8794284-CDS-S-firma_F_contig1049:16122..162121622815583.8794284-CDS-S-firma_F_contig1049:16122..16212Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 16123..16212 -
1696949433.8942487-CDS-S-firma_F_contig1049:16122..162121696949433.8942487-CDS-S-firma_F_contig1049:16122..16212Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1049 16123..16212 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.8915844-UTR-S-firma_F_contig1049:16212..162401622815583.8915844-UTR-S-firma_F_contig1049:16212..16240Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1049 16213..16240 -
1696949433.9071434-UTR-S-firma_F_contig1049:16212..162401696949433.9071434-UTR-S-firma_F_contig1049:16212..16240Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1049 16213..16240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1049.687.1

>prot_S-firma_F_contig1049.687.1 ID=prot_S-firma_F_contig1049.687.1|Name=mRNA_S-firma_F_contig1049.687.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=110bp
MSRFAKFATGLRDFGNDINANISKALNISKEPEDPNQILLQEAKAGRAFG
LEAILEEFGPAASVNGALDSSFHSPLSLACRGGHEEAALFLLRRAGADPN
NALGAEAAAA
back to top

mRNA from alignment at S-firma_F_contig1049:14145..16240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1049.687.1 ID=mRNA_S-firma_F_contig1049.687.1|Name=mRNA_S-firma_F_contig1049.687.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2096bp|location=Sequence derived from alignment at S-firma_F_contig1049:14145..16240- (Sphaerotrichia firma ET2_F female)
CACGGCACGGGGTAGCAGCAGCGGCGTAATGTCGCGCTTTGCGAAGTTTG
CGACGGGTCTGCGAGATTTTGGGAATGACATCAACGCCAACATCTCCAAG
GCACTCAACATCTCCAAGGTAAGAGACAGCAGAAGCAGACACACAGGCAG
ACAAAGGTAGCGACACTTGTTCCGAACTTGAACTGCATATTTTCCCGCAC
CCCGTGTCGCTTTAGGGGCAACGCTGATCCAAGGGATAGTTTGTGGCTTT
TTGGGGTGCTTCGATACGGCATCTTTTTTTGTCGGATGCTTGTGTGAAAG
CGCAAAAACGTAAACGTAACTCTCTTTGTCAAACGCATCTCGTGCAGTGG
TACGGCGGTACTTTTGCAGATGGAAGATTGAAAGCAGGGTTCGGTGTTGA
CCGACATACTCGAGTGTGTGTGCATGCTGTACACGCTGCTAGTGCGGCAA
CATAGCGTGGTTGGCACGAACTATGCTAATGAGACACCCCGTCGACAGCG
TACTAAATCCAATGAGCCTCTGAATACAAAAGACACCGACACAGCAAGTG
GTTTCTTCGCTCCTTGCGCGAGCCCAAGCGGTTGGGATCACTACATTTGC
GCCAGATGCATTGCAAGCCTCTGCTTGATGTTGTCCGCGCTGGTAGTCTT
CGTTCTCTGTTTGTGTGGAAGCACCCCGTGGCCGTGGCAGTCCACTCGAA
CGGACGGCGTTCATGCATCAGCGAGTATATTGCCGCGTCTCAACAGAAGT
ATGTACAGCTGGAAATCCCAGTCTTAGGAGTGTAGTTTCGTAGTTTAGGT
AAATAAGTAAATACGAACGAACATGCAGGACCACCCTCCTCCCCTTTGCA
TGCACCACTGCGTTTCTGCTGCTGTATCCCTTGGCTTCGTTCGGCGGTAC
CGGTGCATCCAGGCAGACTTTTCCACCTACACAAGCAGACACAGAAGCAA
CGAGGGTAAGATCCTCTCATTAATTAACACGTTAGACGACACCAGAGATG
CCCCGGCGAGTTTTCCCGCGTGCCTTCAAGGCCCGCGGAATTTTCTTCCG
GCAGCCAGAGAGCCCTCCTGCATTTCAGGTGCAATCTGCCAAAAACTAAC
GAAAGGGTTGCGGTAAGCACGACGTTCGGACCCAGATACTTGCAACAGCA
CGGCACACACCGCCGTACTCTGTTTTACTCCAGTTGCACTGCTCTTGGTT
CCAATTGCCTTCGTTCCACCGGGGTATGAGTCAACCCAGTGGGAAAAAGG
AAAATATACCGTCAAACAGACGTTGCGCTTCGATCGTCATCGTTACGTGT
GTGTAGTGCTAAGGTACACACAGACAGCGGCCCGGCGAAGTTTTCCCGGT
GTATCTCCAAGGCCCATCGAAATTTCTTCTTCTCCCCATAGACTACATGA
ACACCTTCTGCATTCTCTTTGTCTTTAATGATACATAGGACGCAAGAGAG
ACGAAACACGAAACACCCTCGCACACTATGTGTGCCCTCATGTAGTGTTT
CTTAGCATCATGCTGCTGCAGACCAACTAGCCGGCTGACCACAAAATGCT
TTAGTTTGACAAAGGCTTGTGTGTGTGCACCTGTCTCTCTCTCTCTACTG
CGGGCAGCCTTTCCTCGGTGACCCTAGGCAGCAACTGCGTAGCTATTCAC
ACGCCTAGGCCGCGCAAAAAATCATCATGCACCGCTCTTTCGGAACAAGC
CTCCCTTACCCACATCCCCGCTTTTGTAGTGCCTCCCCTTCAAAAACACG
TGCCCAAACAGACCCCCACCCCCATCCGCCCTCCGCGCGAACGAAACTCA
ACACCCTCGCACCCTCTGCCCGGCGCACGCTGCAAACTCAAACACGATCT
ACGCAGGAGCCCGAAGACCCAAACCAAATCCTCCTGCAGGAGGCCAAAGC
CGGCCGAGCGTTCGGCCTGGAGGCGATCTTGGAGGAGTTCGGGCCCGCCG
CTAGCGTGAACGGGGCGCTGGACAGCTCCTTCCACTCGCCGCTGAGCCTC
GCGTGCCGCGGCGGCCACGAAGAGGCCGCGCTGTTCCTGCTCCGCCGGGC
CGGCGCCGATCCGAACAACGCTCTCGGAGCCGAGGCGGCGGCGGCG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1049:14145..16240-

>mRNA_S-firma_F_contig1049.687.1 ID=mRNA_S-firma_F_contig1049.687.1|Name=mRNA_S-firma_F_contig1049.687.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=660bp|location=Sequence derived from alignment at S-firma_F_contig1049:14145..16240- (Sphaerotrichia firma ET2_F female)
ATGTCGCGCTTTGCGAAGTTTGCGACGGGTCTGCGAGATTTTGGGAATGA
CATCAACGCCAACATCTCCAAGGCACTCAACATCTCCAAGATGTCGCGCT
TTGCGAAGTTTGCGACGGGTCTGCGAGATTTTGGGAATGACATCAACGCC
AACATCTCCAAGGCACTCAACATCTCCAAGGAGCCCGAAGACCCAAACCA
AATCCTCCTGCAGGAGGCCAAAGCCGGCCGAGCGTTCGGCCTGGAGGCGA
TCTTGGAGGAGTTCGGGCCCGCCGCTAGCGTGAACGGGGCGCTGGACAGC
TCCTTCCACTCGCCGCTGAGCCTCGCGTGCCGCGGCGGCCACGAAGAGGC
CGCGCTGTTCCTGCTCCGCCGGGCCGGCGCCGATCCGAACAACGCTCTCG
GAGCCGAGGCGGCGGCGGCGGAGCCCGAAGACCCAAACCAAATCCTCCTG
CAGGAGGCCAAAGCCGGCCGAGCGTTCGGCCTGGAGGCGATCTTGGAGGA
GTTCGGGCCCGCCGCTAGCGTGAACGGGGCGCTGGACAGCTCCTTCCACT
CGCCGCTGAGCCTCGCGTGCCGCGGCGGCCACGAAGAGGCCGCGCTGTTC
CTGCTCCGCCGGGCCGGCGCCGATCCGAACAACGCTCTCGGAGCCGAGGC
GGCGGCGGCG
back to top