mRNA_S-firma_F_contig10483.681.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10483.681.1
Unique NamemRNA_S-firma_F_contig10483.681.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10483.681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10483contigS-firma_F_contig10483:3782..4467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10483.681.1prot_S-firma_F_contig10483.681.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10483 4001..4447 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.1220746-UTR-S-firma_F_contig10483:3781..40001622815583.1220746-UTR-S-firma_F_contig10483:3781..4000Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10483 3782..4000 +
1696949433.3838103-UTR-S-firma_F_contig10483:3781..40001696949433.3838103-UTR-S-firma_F_contig10483:3781..4000Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10483 3782..4000 +
1622815583.2060585-UTR-S-firma_F_contig10483:4447..44671622815583.2060585-UTR-S-firma_F_contig10483:4447..4467Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10483 4448..4467 +
1696949433.4114883-UTR-S-firma_F_contig10483:4447..44671696949433.4114883-UTR-S-firma_F_contig10483:4447..4467Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10483 4448..4467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.19423-CDS-S-firma_F_contig10483:4000..44471622815583.19423-CDS-S-firma_F_contig10483:4000..4447Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10483 4001..4447 +
1696949433.3923542-CDS-S-firma_F_contig10483:4000..44471696949433.3923542-CDS-S-firma_F_contig10483:4000..4447Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10483 4001..4447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10483.681.1

>prot_S-firma_F_contig10483.681.1 ID=prot_S-firma_F_contig10483.681.1|Name=mRNA_S-firma_F_contig10483.681.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=149bp
MKTRERNDKNIRRLNIHQPLHHHRPTYKPLIYLALTPTRLETLHPPKMLN
AGFSQQGEATCIGYKTRHTENIYRGKKQLLVRRKLKSFTHIVSKEATTCS
KIHHDMFSTVRPPRICIGIPTGLPPPPASSAQHPLPPSFYPCRLPAPI*
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mRNA from alignment at S-firma_F_contig10483:3782..4467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10483.681.1 ID=mRNA_S-firma_F_contig10483.681.1|Name=mRNA_S-firma_F_contig10483.681.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=686bp|location=Sequence derived from alignment at S-firma_F_contig10483:3782..4467+ (Sphaerotrichia firma ET2_F female)
ATGATGGTGGCACCTTGGCAAGGCGAGAACTGCGGACCTTGGAGGGGCTT
TTGCCGAAACCGGGGTTCTCTTCGTTGGTTTCCTATGTACAACAACGATA
TCGATCTACGCTTTCCCAGCAAGAAGCACAACATACATACCTACATCGCC
AATTTTTGATACGGGCGACTCCCGCGGTGACGCAGGCTATATTTCAATAC
GCAACCCCCAACATGAAAGATGAAAACGCGAGAAAGGAACGACAAGAACA
TCCGGCGACTAAATATCCATCAACCTCTTCACCACCACCGACCGACGTAC
AAACCACTTATCTATCTCGCTCTCACTCCAACTCGCCTAGAAACTTTGCA
CCCGCCCAAGATGTTGAATGCCGGCTTCTCTCAACAAGGTGAGGCAACGT
GCATAGGCTATAAGACAAGACATACAGAAAATATATACAGGGGGAAAAAA
CAGCTCTTGGTGCGACGAAAACTTAAAAGCTTCACACATATAGTGTCCAA
GGAAGCAACTACCTGTAGCAAGATTCATCATGACATGTTTTCTACTGTAC
GGCCTCCACGCATTTGCATAGGTATCCCAACAGGCCTTCCGCCTCCCCCG
GCATCATCTGCCCAACACCCGCTCCCCCCCTCGTTCTACCCCTGCCGGCT
CCCGGCTCCCATCTAGGAAGAAAAGAGCCGCTTCCT
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Coding sequence (CDS) from alignment at S-firma_F_contig10483:3782..4467+

>mRNA_S-firma_F_contig10483.681.1 ID=mRNA_S-firma_F_contig10483.681.1|Name=mRNA_S-firma_F_contig10483.681.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=894bp|location=Sequence derived from alignment at S-firma_F_contig10483:3782..4467+ (Sphaerotrichia firma ET2_F female)
ATGAAAACGCGAGAAAGGAACGACAAGAACATCCGGCGACTAAATATCCA
TCAACCTCTTCACCACCACCGACCGACGTACAAACCACTTATCTATCTCG
CTCTCACTCCAACTCGCCTAGAAACTTTGCACCCGCCCAAGATGTTGAAT
GCCGGCTTCTCTCAACAAGGTGAGGCAACGTGCATAGGCTATAAGACAAG
ACATACAGAAAATATATACAGGGGGAAAAAACAGCTCTTGGTGCGACGAA
AACTTAAAAGCTTCACACATATAGTGTCCAAGGAAGCAACTACCTGTAGC
AAGATTCATCATGACATGTTTTCTACTGTACGGCCTCCACGCATTTGCAT
AGGTATCCCAACAGGCCTTCCGCCTCCCCCGGCATCATCTGCCCAACACC
CGCTCCCCCCCTCGTTCTACCCCTGCCGGCTCCCGGCTCCCATCTAGATG
AAAACGCGAGAAAGGAACGACAAGAACATCCGGCGACTAAATATCCATCA
ACCTCTTCACCACCACCGACCGACGTACAAACCACTTATCTATCTCGCTC
TCACTCCAACTCGCCTAGAAACTTTGCACCCGCCCAAGATGTTGAATGCC
GGCTTCTCTCAACAAGGTGAGGCAACGTGCATAGGCTATAAGACAAGACA
TACAGAAAATATATACAGGGGGAAAAAACAGCTCTTGGTGCGACGAAAAC
TTAAAAGCTTCACACATATAGTGTCCAAGGAAGCAACTACCTGTAGCAAG
ATTCATCATGACATGTTTTCTACTGTACGGCCTCCACGCATTTGCATAGG
TATCCCAACAGGCCTTCCGCCTCCCCCGGCATCATCTGCCCAACACCCGC
TCCCCCCCTCGTTCTACCCCTGCCGGCTCCCGGCTCCCATCTAG
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