mRNA_S-firma_F_contig10481.678.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10481.678.1
Unique NamemRNA_S-firma_F_contig10481.678.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10481.678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10481contigS-firma_F_contig10481:245..985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size741
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10481.678.1prot_S-firma_F_contig10481.678.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10481 372..968 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.9532678-UTR-S-firma_F_contig10481:244..3711622815582.9532678-UTR-S-firma_F_contig10481:244..371Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10481 245..371 +
1696949433.3165503-UTR-S-firma_F_contig10481:244..3711696949433.3165503-UTR-S-firma_F_contig10481:244..371Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10481 245..371 +
1622815582.983964-UTR-S-firma_F_contig10481:968..9851622815582.983964-UTR-S-firma_F_contig10481:968..985Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10481 969..985 +
1696949433.3389227-UTR-S-firma_F_contig10481:968..9851696949433.3389227-UTR-S-firma_F_contig10481:968..985Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10481 969..985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.9689338-CDS-S-firma_F_contig10481:371..9681622815582.9689338-CDS-S-firma_F_contig10481:371..968Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10481 372..968 +
1696949433.3269904-CDS-S-firma_F_contig10481:371..9681696949433.3269904-CDS-S-firma_F_contig10481:371..968Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10481 372..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10481.678.1

>prot_S-firma_F_contig10481.678.1 ID=prot_S-firma_F_contig10481.678.1|Name=mRNA_S-firma_F_contig10481.678.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=199bp
MYNTCYPAKTPNAQLLAFWFSHGVGFVRLGRLKYYKTLRHAMTCPPHSYT
APAPTLKHEMISISHSAKRPSRELTNRCTMKKSIQNTLKCTSKKHTDPRH
ARPLPPPNASKETPATVVSHRVAHPLLRDRAICLLLRILSPPLSPRPLPS
LPPTGWFVSFSLGGAGRLPQSPHRTPPNIQRNIRKKSSNRRGGTRGGI*
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mRNA from alignment at S-firma_F_contig10481:245..985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10481.678.1 ID=mRNA_S-firma_F_contig10481.678.1|Name=mRNA_S-firma_F_contig10481.678.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=741bp|location=Sequence derived from alignment at S-firma_F_contig10481:245..985+ (Sphaerotrichia firma ET2_F female)
TCCTCCGCGCGCCGACGCCCGACAACAACACAGGTCAGGCGATGACACCT
TTTCACGTTATTCGTGATCGTGAACAGGAAAAAACCGACCCGAAAGCAAA
ACATGAACGGAAAGTAGGAGATATGGTATGTATAACACATGCTACCCCGC
GAAAACCCCCAATGCCCAGCTCCTTGCTTTTTGGTTCTCACATGGTGTCG
GCTTTGTGCGACTTGGGCGGCTTAAATATTACAAGACATTGCGACACGCA
ATGACTTGTCCCCCACACTCATATACAGCCCCCGCCCCAACACTGAAACA
TGAAATGATTTCGATCTCTCACAGCGCGAAACGGCCATCCAGAGAGCTAA
CCAACCGTTGCACCATGAAAAAATCCATACAAAATACTCTAAAATGCACG
TCAAAAAAACACACAGACCCGAGGCACGCTCGACCCCTGCCCCCGCCCAA
CGCCTCGAAAGAAACGCCTGCCACTGTAGTCAGTCACCGCGTAGCACACC
CACTTCTTAGAGATCGTGCCATCTGCCTCTTACTTCGTATATTATCTCCA
CCCCTTTCCCCCCGCCCCCTCCCTTCTCTTCCTCCCACTGGCTGGTTCGT
TTCTTTCTCGCTCGGAGGGGCAGGCAGGTTACCCCAATCACCGCACCGCA
CACCGCCAAACATCCAGCGAAACATAAGAAAAAAATCGAGCAACCGCCGT
GGGGGTACCCGGGGGGGTATATAGCAGGTTTAGCTAACACA
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Coding sequence (CDS) from alignment at S-firma_F_contig10481:245..985+

>mRNA_S-firma_F_contig10481.678.1 ID=mRNA_S-firma_F_contig10481.678.1|Name=mRNA_S-firma_F_contig10481.678.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1194bp|location=Sequence derived from alignment at S-firma_F_contig10481:245..985+ (Sphaerotrichia firma ET2_F female)
ATGTATAACACATGCTACCCCGCGAAAACCCCCAATGCCCAGCTCCTTGC
TTTTTGGTTCTCACATGGTGTCGGCTTTGTGCGACTTGGGCGGCTTAAAT
ATTACAAGACATTGCGACACGCAATGACTTGTCCCCCACACTCATATACA
GCCCCCGCCCCAACACTGAAACATGAAATGATTTCGATCTCTCACAGCGC
GAAACGGCCATCCAGAGAGCTAACCAACCGTTGCACCATGAAAAAATCCA
TACAAAATACTCTAAAATGCACGTCAAAAAAACACACAGACCCGAGGCAC
GCTCGACCCCTGCCCCCGCCCAACGCCTCGAAAGAAACGCCTGCCACTGT
AGTCAGTCACCGCGTAGCACACCCACTTCTTAGAGATCGTGCCATCTGCC
TCTTACTTCGTATATTATCTCCACCCCTTTCCCCCCGCCCCCTCCCTTCT
CTTCCTCCCACTGGCTGGTTCGTTTCTTTCTCGCTCGGAGGGGCAGGCAG
GTTACCCCAATCACCGCACCGCACACCGCCAAACATCCAGCGAAACATAA
GAAAAAAATCGAGCAACCGCCGTGGGGGTACCCGGGGGGGTATATAGATG
TATAACACATGCTACCCCGCGAAAACCCCCAATGCCCAGCTCCTTGCTTT
TTGGTTCTCACATGGTGTCGGCTTTGTGCGACTTGGGCGGCTTAAATATT
ACAAGACATTGCGACACGCAATGACTTGTCCCCCACACTCATATACAGCC
CCCGCCCCAACACTGAAACATGAAATGATTTCGATCTCTCACAGCGCGAA
ACGGCCATCCAGAGAGCTAACCAACCGTTGCACCATGAAAAAATCCATAC
AAAATACTCTAAAATGCACGTCAAAAAAACACACAGACCCGAGGCACGCT
CGACCCCTGCCCCCGCCCAACGCCTCGAAAGAAACGCCTGCCACTGTAGT
CAGTCACCGCGTAGCACACCCACTTCTTAGAGATCGTGCCATCTGCCTCT
TACTTCGTATATTATCTCCACCCCTTTCCCCCCGCCCCCTCCCTTCTCTT
CCTCCCACTGGCTGGTTCGTTTCTTTCTCGCTCGGAGGGGCAGGCAGGTT
ACCCCAATCACCGCACCGCACACCGCCAAACATCCAGCGAAACATAAGAA
AAAAATCGAGCAACCGCCGTGGGGGTACCCGGGGGGGTATATAG
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