mRNA_S-firma_F_contig1046.652.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE) HSP 1 Score: 239 bits (611), Expect = 3.990e-70 Identity = 172/443 (38.83%), Postives = 250/443 (56.43%), Query Frame = 1
Query: 1 RSPGLVTLSGCSGTLIAVVSVFRILL--EVDPAEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGR-FAKEPFMMRALVLSCVVL--VGAL--------------------------------WIACSL--------FGTQRVATFAPVIIFFLDTLLILGASLALHGKLRSANDIYHMSREIRVVGALALLALG--MAVAFSSMS---IRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAID-MGRSQF-----RSQLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVA----IVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
RSP L T+SG +G + + ++ EV A+ ++ VP++L + GAY++RG RLLVMYNPHMR RWGR F KE FM++ +++ VVL V +L W+ F RVA A + + +D LL +GASL L GKL D++ MS EIR VG ALLALG M + + + + ++ ++ RF + +WITNI P+R +L+RRA + +G + S FPY+PW T S VAID M S+ S+ V+ + LE I+R PPLL+AF +CRKALCSESLMFL K F +SL+ + DADY + A IV +Y+R+ S +E+NIESKT+++I+ T +F EL L + +L+ AVKE+G++L ENL KFR+T+++++I+D
Sbjct: 51 RSPLLGTVSGLAGVSVWAFATTGAVINSEVVNAQLAFAPIITVPLVLVAFVGAYIIRGIRLLVMYNPHMRHRWGRYFNKETFMVKVVIVLFVVLQLVSSLAXXXXXXXXXXXTGDDNTMLGETFHEALQAMRWLTTLFTELLIRIKFAAYRVAG-AMIAVIAVDMLLTIGASLMLVGKLARTKDMFDMSVEIRSVGGFALLALGELMGIVIPMVPATVLNFYLILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIA-SLFPYVPWTT-RSGAVAIDVMNESKVFTKPSSSKFTSVK-LDDKLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDAS------DADYDTIFARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKD 483
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI) HSP 1 Score: 225 bits (574), Expect = 3.210e-65 Identity = 146/389 (37.53%), Postives = 220/389 (56.56%), Query Frame = 1
Query: 1 RSPGLVTLSGCSGTLIAVVSVFRILLEVDPAEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAK-EPFMMRALVLSCVVLVGALWIACSLFGTQRVATFAPVIIFFLDTLLILGASLALHGKLRSANDIYHMSREIRVVGALALLALGMAVAFSSMS---IRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMGRSQFRSQL----EGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQI 1143
RSP L+T SG +G L +V R ++ + +P+ AY++RG R++VMY P R RWGR+ K E M++ L+ + V++ A WI G RVA+F ++ +DT++ L ASLAL G+LR D++ +S EI+ GA ALL M + S+ + + ++ + VRF +W+TNI P R L RR G + FPY+PW+ VAID + + + +E I+R P LL+AFE +CRKALCSES++FL A AF+ S V S ++D ++ + I KY+++ SP+EINIESKT+S IM+ T+ + F +L L + + L+ A KEVG++L ENL KFR T +++QI
Sbjct: 43 RSPVLMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALCLVVAYILRGLRVIVMYTPSRRQRWGRYLKKEAAMVKVLLTAYVIVEVAAWIVVRHVGLARVASFMVTVVK-IDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVLEFYLVLFYTVRFHVILWLTNIQPARERLGRRDATPNTRG-IMAKLFPYVPWRKHGGT-VAIDSAECMVLAASTHCSKSTVKLDDAMEEILRCPVLLEAFEEFCRKALCSESILFLKAAWAFNDS--VYASTANEDTNFALFMDIFDKYIKDGSPFEINIESKTKSFIMKRTDKEAFKQLRLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQI 426
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI) HSP 1 Score: 174 bits (442), Expect = 6.360e-45 Identity = 138/471 (29.30%), Postives = 233/471 (49.47%), Query Frame = 1
Query: 1 RSPGLVTLSGCSGTLIAVVSVFRILLEVDPAEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAKEPFMMRALVLSCVVLVGALWIACSLFGT------QRVATFAPVIIFFLDTLLIL--GASLALHGK----------LRSANDIY---------HMS----REIRVVGAL-ALLALGMAVA---FSSMSIRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMGRSQFRS----QLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQDHANVLGIDEEVV*A**GCEQVGRAPCCSPVVILAHCGNSKAWRRWPAHA 1296
RSP L +SG G LI+ + + L D + G ++L VP+ML+ +T Y++RG RLL+M+ P R RWG F +E + ++ +VL +W +G Q + I F + L+ + + +G LR A H+S R + L A + +GM A ++ +R M+ +++VRF + +WITNI P+R +LR+ + K +FPY+PW+ AS +VA+ M + + L ++ LE I+ PPLL+AF+ +C+KALC ES++ L + AF S+ + DDDA +++ VAIV K+++ S YE+NI+ + R+ +MR + F EL ++ + A + Q+L++NL KF+AT+ Y++I + + I C+ + SPV H G+++ +W H+
Sbjct: 107 RSPMLAVMSGAIGILISGPEIIGMTLTYDMSA-GPEKILCVPLMLS-FTATYILRGVRLLIMFTPRSRQRWGSFLRERNFIPIVLAIFLVLQVVVWSFVPTYGVPIKCWIQHNCVKSQGISFVWNMLVCVPRAGTTRTNGHPSFNCRWCSVLREAPGALPRATLFTCLHLSILNFRSVWCCECLDAAMVMGMKAAGEFYTPTLMRMHMVVFMVVRFHTALWITNIKPVREVLRQSSDRKDYH----VPWFPYVPWRRSASGKVAVGMNETMHVTCTSRPLSTIQLGR--LETIINTPPLLEAFDSFCQKALCGESILLLREVAAFRDSIYAVEA--DDDALFKEFVAIVNKFIKSGSSYEVNIDCRARTGVMRDVDEARFKELDTDGRADIFTLAETQTSQMLADNLLAKFQATERYQRIAEGLLAIDIIASGDEGREHCDAAANSMSKSPV----HRGSTRHTLKWTRHS 563
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5JLE7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE7_9PHAE) HSP 1 Score: 153 bits (386), Expect = 2.710e-39 Identity = 111/284 (39.08%), Postives = 151/284 (53.17%), Query Frame = 1
Query: 355 DTLLILGASLALHGKLRSANDIYHMSREIRVVGALALLALGMAVAFSSMSIRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMG---RSQFRSQLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDAD----------------YQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
DTLL LGASL L GKLR D++ MS EI+ VG A+ AL A +S + Q+ +NI P+R L R +E+ + FPY+PW SR+VA++ RSQ S G +VL+ I++ PPL QA ESLMFL+DA F+ SL T AD ++Q AIV KY+RE SP+E+NIESK R EI+R + +F L+L EK +L+KA K+V +L ENL KFR T++++QIQ+
Sbjct: 22 DTLLTLGASLVLFGKLRKTKDVFDMSLEIQKVGIFAMAALECYHAVKDLS--------TVGPSQAR---SNIQPVRAALLRGPA--KETVGFISLLFPYIPWTKHGSRKVAVEASYTLRSQAASSAGG-----TVLDLIIQFPPLFQACLSPVSDCAFVESLMFLVDADEFNCSLHAVSKFTSAGADPSPAAMGVVECEENLNFEQFAAIVDKYIREGSPFEVNIESKIRDEILREVDRASFRRLTLDEKVHLLDKATKQVSNMLRENLYLKFRETEQFKQIQE 287
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: D7FN97_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN97_ECTSI) HSP 1 Score: 145 bits (367), Expect = 1.110e-37 Identity = 83/191 (43.46%), Postives = 118/191 (61.78%), Query Frame = 1
Query: 634 TSFFPYLPWQTPASRRVAIDMG---RSQFRSQLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLE----------------VAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
+S FPY+PW +VA++ RSQ S G +VL+ I++ PPL QAFE YCR ALCSESLMFL+DA F+ +L VA + + + +++Q AIV KY+RE SP+E+NIESK R+EI+R + +F L+L +K +LEKA K+V +L ENL KFR T++++QIQ+
Sbjct: 5 SSLFPYIPWTKHERSKVAVEASYTLRSQSASSAGG-----TVLDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFSTAGKDPESAAVAVNECEHNPNFEQFAAIVDKYIREGSPFEVNIESKIRNEILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQE 190
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI) HSP 1 Score: 145 bits (367), Expect = 2.550e-35 Identity = 115/366 (31.42%), Postives = 186/366 (50.82%), Query Frame = 1
Query: 91 AEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAKEPFMMRALVLSCVVLVGALWIACSLFGTQRVA-TFAPVIIFFLDTLLILGASLALHGKLRSANDIYHMSREIRVVGALALLA----LGMA-VAFSSMSIRYIMLAWVIVRFQSCIWITNILPIRMILRR--RARNKRESGRLCTSFFPYLPWQTPASR-RVAIDMGRSQFRSQLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDD----ADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
A G ++ P++L + A VM RLLVM+ P +R +WGRF +E ++ LV + +++ GALW + G R A + +F T ++ G + G+L +D+ HMS +IRVVG L LL G+ V+ S M +Y + + + +W+TNI P+R + R R R+ +L + PY W T R VA D + E D ++ L IM PL +AF +CR++LC ES FL+D + F K L +A SA ++ + +A+V Y+++ S E+NI S T+ IM+ + + L L ++ + A +E+ VL++NL KF + Y ++ D
Sbjct: 78 ASHGVTNMIEFPVLL-ISEFALVMSAVRLLVMFFPKLRAKWGRFTREKDLVYGLVCAYILMEGALWSGVAAVGVSRTGGVLATLELFSGSTTVVAGVLVG--GRLNKVDDLLHMSTDIRVVGMLLLLMSCVHAGLHYVSMSPMEYKYYTIVLMALSHPPIVWLTNIRPVREVERNIPARRRSRKDFQLPS---PYRRWSTKNIRVGVAADENNNSLPWNGEVYLD-DNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEF-KDL-IADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAALKLEDRKDIFGPAEREIKIVLADNLLNKFLVSDPYTKVVD 434
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE) HSP 1 Score: 139 bits (351), Expect = 4.400e-33 Identity = 105/364 (28.85%), Postives = 182/364 (50.00%), Query Frame = 1
Query: 91 AEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAKEPFMMRALVLSCVVLVGALWIACSLFGTQR-VATFAPVIIFFLDTLLILGASLALHGKLRSANDIYHMSREIRVVGALALL--ALGMAVAFSSMS---IRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMGRSQFRSQLEGVEDA---ESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDA--DYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
A DG L+ P +L + A VM RLLVM+ P +R +WGRF +E ++ LV + +++ GALW + G R V + +F T ++ G L G+L +D+ HMS +IRVVG + LL + + + SMS +Y + + +W+ NI P+ + R +R SF P++ +++ + + + + + L +A ++ L IM PL +AF +CR++LC ES FL+D + F + + + T + + + +AIV Y+++ S E+NI S T+ IM+ + + L L E+ + A +E+ VL++NL KF + Y ++ D
Sbjct: 78 ASDGVTSLIEFPALL-ISEFALVMSAVRLLVMFFPKLRAKWGRFTRERDLVYGLVCAYILMEGALWSGVAAVGLSRTVGVLVTLELFTGSTTVVAGVLLG--GRLNKVDDLLHMSTDIRVVGTILLLMTCVHKGLPYLSMSPTEYQYCKITLTALLHPPIVWLINIRPVLEVGRNIPARRRSRK----SFHLPSPFRRRSTKNIRVGVAADEDINTLPWNGEAYLNDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAETSEKSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAALQLEERKDLFGPAEREIKIVLADNLLNKFLVSDPYTKVVD 434
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5K6R2_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R2_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.240e-21 Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 1
Query: 562 TNILPIRM-ILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMGRSQFRSQ------LEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLV 1041
+NI IR +L RR RN +G + S PY+PW+ AS VA+D +F S+ + + LE I+ PLL+AFE +C+KALC ESLMFL F S+ S DD ++ L IV KYV+ SP+E+NI+SKT+S I+ +TF L V
Sbjct: 7 SNIQSIRASVLPRRRRNNYNNGGIIASLLPYIPWREDASI-VAVDAVGRRFTSRGVSLGNINRSVKLDDALEQILCFTPLLEAFEEFCQKALCIESLMFLKAVMGFRGSVHA--STASDDGNFTLLTDIVQKYVQSGSPFEVNIDSKTKSNILVKITRETFMRLPQV 170
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 6.480e-11 Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 742 ESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIM 999
E+ L IM PL AF +CRKALC ES FL+D F S+ A +D Y++ + IV +Y+ ++S +E+NI+S+T+ EI+
Sbjct: 16 ETRLATIMGFLPLEHAFGEFCRKALCHESFQFLVDVSKFKSSVHAAHQGGNDS--YEEFIVIVDEYIEDNSNFEVNIDSRTKKEIL 99
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5KBN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN3_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 2.490e-9 Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1
Query: 1 RSPGLVTLSGCSGTLIAVVSVFRILLEVDPAEDGAFELLL-VPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRF-AKEPFMMRALVLSCVVLVGALWIACSLFGTQ 315
RSP L T SG G ++ +V R+++ D + L++ VP+M + G YVMRG RLLVMYNP R WGRF E +++ L+++ ++ W A LFG +
Sbjct: 62 RSPLLATTSGLVGVVLGAFAVARLIVIPDKLVVHSISLIIFVPLMELGFLGPYVMRGIRLLVMYNPATRTHWGRFFTSELAVVKILLVAFGIVEVIAWSAVLLFGLE 168 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1046.652.1 >prot_S-firma_F_contig1046.652.1 ID=prot_S-firma_F_contig1046.652.1|Name=mRNA_S-firma_F_contig1046.652.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=354bp MMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAKEPFMMRALVLSCVVLVback to top mRNA from alignment at S-firma_F_contig1046:22394..25697- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1046.652.1 ID=mRNA_S-firma_F_contig1046.652.1|Name=mRNA_S-firma_F_contig1046.652.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3304bp|location=Sequence derived from alignment at S-firma_F_contig1046:22394..25697- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1046:22394..25697- >mRNA_S-firma_F_contig1046.652.1 ID=mRNA_S-firma_F_contig1046.652.1|Name=mRNA_S-firma_F_contig1046.652.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2124bp|location=Sequence derived from alignment at S-firma_F_contig1046:22394..25697- (Sphaerotrichia firma ET2_F female)back to top |