mRNA_S-firma_F_contig1046.652.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1046.652.1
Unique NamemRNA_S-firma_F_contig1046.652.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 3.990e-70
Identity = 172/443 (38.83%), Postives = 250/443 (56.43%), Query Frame = 1
Query:    1 RSPGLVTLSGCSGTLIAVVSVFRILL--EVDPAEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGR-FAKEPFMMRALVLSCVVL--VGAL--------------------------------WIACSL--------FGTQRVATFAPVIIFFLDTLLILGASLALHGKLRSANDIYHMSREIRVVGALALLALG--MAVAFSSMS---IRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAID-MGRSQF-----RSQLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVA----IVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
            RSP L T+SG +G  +   +    ++  EV  A+     ++ VP++L  + GAY++RG RLLVMYNPHMR RWGR F KE FM++ +++  VVL  V +L                                W+            F   RVA  A + +  +D LL +GASL L GKL    D++ MS EIR VG  ALLALG  M +    +    + + ++ ++  RF + +WITNI P+R +L+RRA +   +G +  S FPY+PW T  S  VAID M  S+       S+   V+  +  LE I+R PPLL+AF  +CRKALCSESLMFL   K F +SL+ +      DADY  + A    IV +Y+R+ S +E+NIESKT+++I+  T   +F EL L +   +L+ AVKE+G++L ENL  KFR+T+++++I+D
Sbjct:   51 RSPLLGTVSGLAGVSVWAFATTGAVINSEVVNAQLAFAPIITVPLVLVAFVGAYIIRGIRLLVMYNPHMRHRWGRYFNKETFMVKVVIVLFVVLQLVSSLAXXXXXXXXXXXTGDDNTMLGETFHEALQAMRWLTTLFTELLIRIKFAAYRVAG-AMIAVIAVDMLLTIGASLMLVGKLARTKDMFDMSVEIRSVGGFALLALGELMGIVIPMVPATVLNFYLILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIA-SLFPYVPWTT-RSGAVAIDVMNESKVFTKPSSSKFTSVK-LDDKLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDAS------DADYDTIFARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKD 483          
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 3.210e-65
Identity = 146/389 (37.53%), Postives = 220/389 (56.56%), Query Frame = 1
Query:    1 RSPGLVTLSGCSGTLIAVVSVFRILLEVDPAEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAK-EPFMMRALVLSCVVLVGALWIACSLFGTQRVATFAPVIIFFLDTLLILGASLALHGKLRSANDIYHMSREIRVVGALALLALGMAVAFSSMS---IRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMGRSQFRSQL----EGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQI 1143
            RSP L+T SG +G L    +V R ++           +  +P+       AY++RG R++VMY P  R RWGR+ K E  M++ L+ + V++  A WI     G  RVA+F   ++  +DT++ L ASLAL G+LR   D++ +S EI+  GA ALL   M +   S+    + + ++ +  VRF   +W+TNI P R  L RR       G +    FPY+PW+      VAID       +      +     +  +E I+R P LL+AFE +CRKALCSES++FL  A AF+ S  V  S  ++D ++   + I  KY+++ SP+EINIESKT+S IM+ T+ + F +L L + +  L+ A KEVG++L ENL  KFR T +++QI
Sbjct:   43 RSPVLMTASGLAGVLAGSTAVSRTVMFPGLRSLFILRIFSIPLTALCLVVAYILRGLRVIVMYTPSRRQRWGRYLKKEAAMVKVLLTAYVIVEVAAWIVVRHVGLARVASFMVTVVK-IDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLTSVMIMFLGSIPAGVLEFYLVLFYTVRFHVILWLTNIQPARERLGRRDATPNTRG-IMAKLFPYVPWRKHGGT-VAIDSAECMVLAASTHCSKSTVKLDDAMEEILRCPVLLEAFEEFCRKALCSESILFLKAAWAFNDS--VYASTANEDTNFALFMDIFDKYIKDGSPFEINIESKTKSFIMKRTDKEAFKQLRLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQI 426          
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 6.360e-45
Identity = 138/471 (29.30%), Postives = 233/471 (49.47%), Query Frame = 1
Query:    1 RSPGLVTLSGCSGTLIAVVSVFRILLEVDPAEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAKEPFMMRALVLSCVVLVGALWIACSLFGT------QRVATFAPVIIFFLDTLLIL--GASLALHGK----------LRSANDIY---------HMS----REIRVVGAL-ALLALGMAVA---FSSMSIRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMGRSQFRS----QLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQDHANVLGIDEEVV*A**GCEQVGRAPCCSPVVILAHCGNSKAWRRWPAHA 1296
            RSP L  +SG  G LI+   +  + L  D +  G  ++L VP+ML+ +T  Y++RG RLL+M+ P  R RWG F +E   +  ++   +VL   +W     +G       Q     +  I F  + L+ +    +   +G           LR A             H+S    R +     L A + +GM  A   ++   +R  M+ +++VRF + +WITNI P+R +LR+ +  K         +FPY+PW+  AS +VA+ M  +   +     L  ++     LE I+  PPLL+AF+ +C+KALC ES++ L +  AF  S+    +  DDDA +++ VAIV K+++  S YE+NI+ + R+ +MR  +   F EL    ++ +   A  +  Q+L++NL  KF+AT+ Y++I +    + I          C+    +   SPV    H G+++   +W  H+
Sbjct:  107 RSPMLAVMSGAIGILISGPEIIGMTLTYDMSA-GPEKILCVPLMLS-FTATYILRGVRLLIMFTPRSRQRWGSFLRERNFIPIVLAIFLVLQVVVWSFVPTYGVPIKCWIQHNCVKSQGISFVWNMLVCVPRAGTTRTNGHPSFNCRWCSVLREAPGALPRATLFTCLHLSILNFRSVWCCECLDAAMVMGMKAAGEFYTPTLMRMHMVVFMVVRFHTALWITNIKPVREVLRQSSDRKDYH----VPWFPYVPWRRSASGKVAVGMNETMHVTCTSRPLSTIQLGR--LETIINTPPLLEAFDSFCQKALCGESILLLREVAAFRDSIYAVEA--DDDALFKEFVAIVNKFIKSGSSYEVNIDCRARTGVMRDVDEARFKELDTDGRADIFTLAETQTSQMLADNLLAKFQATERYQRIAEGLLAIDIIASGDEGREHCDAAANSMSKSPV----HRGSTRHTLKWTRHS 563          
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5JLE7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE7_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 2.710e-39
Identity = 111/284 (39.08%), Postives = 151/284 (53.17%), Query Frame = 1
Query:  355 DTLLILGASLALHGKLRSANDIYHMSREIRVVGALALLALGMAVAFSSMSIRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMG---RSQFRSQLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDAD----------------YQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
            DTLL LGASL L GKLR   D++ MS EI+ VG  A+ AL    A   +S         +   Q+    +NI P+R  L R     +E+    +  FPY+PW    SR+VA++     RSQ  S   G     +VL+ I++ PPL QA           ESLMFL+DA  F+ SL      T   AD                ++Q  AIV KY+RE SP+E+NIESK R EI+R  +  +F  L+L EK  +L+KA K+V  +L ENL  KFR T++++QIQ+
Sbjct:   22 DTLLTLGASLVLFGKLRKTKDVFDMSLEIQKVGIFAMAALECYHAVKDLS--------TVGPSQAR---SNIQPVRAALLRGPA--KETVGFISLLFPYIPWTKHGSRKVAVEASYTLRSQAASSAGG-----TVLDLIIQFPPLFQACLSPVSDCAFVESLMFLVDADEFNCSLHAVSKFTSAGADPSPAAMGVVECEENLNFEQFAAIVDKYIREGSPFEVNIESKIRDEILREVDRASFRRLTLDEKVHLLDKATKQVSNMLRENLYLKFRETEQFKQIQE 287          
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: D7FN97_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN97_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.110e-37
Identity = 83/191 (43.46%), Postives = 118/191 (61.78%), Query Frame = 1
Query:  634 TSFFPYLPWQTPASRRVAIDMG---RSQFRSQLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLE----------------VAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
            +S FPY+PW      +VA++     RSQ  S   G     +VL+ I++ PPL QAFE YCR ALCSESLMFL+DA  F+ +L                 VA +  + + +++Q  AIV KY+RE SP+E+NIESK R+EI+R  +  +F  L+L +K  +LEKA K+V  +L ENL  KFR T++++QIQ+
Sbjct:    5 SSLFPYIPWTKHERSKVAVEASYTLRSQSASSAGG-----TVLDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFSTAGKDPESAAVAVNECEHNPNFEQFAAIVDKYIREGSPFEVNIESKIRNEILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQE 190          
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.550e-35
Identity = 115/366 (31.42%), Postives = 186/366 (50.82%), Query Frame = 1
Query:   91 AEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAKEPFMMRALVLSCVVLVGALWIACSLFGTQRVA-TFAPVIIFFLDTLLILGASLALHGKLRSANDIYHMSREIRVVGALALLA----LGMA-VAFSSMSIRYIMLAWVIVRFQSCIWITNILPIRMILRR--RARNKRESGRLCTSFFPYLPWQTPASR-RVAIDMGRSQFRSQLEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDD----ADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
            A  G   ++  P++L +   A VM   RLLVM+ P +R +WGRF +E  ++  LV + +++ GALW   +  G  R     A + +F   T ++ G  +   G+L   +D+ HMS +IRVVG L LL      G+  V+ S M  +Y  +  + +     +W+TNI P+R + R     R  R+  +L +   PY  W T   R  VA D   +      E   D ++ L  IM   PL +AF  +CR++LC ES  FL+D + F K L +A SA ++       +   +A+V  Y+++ S  E+NI S T+  IM+  +   +  L L ++  +   A +E+  VL++NL  KF  +  Y ++ D
Sbjct:   78 ASHGVTNMIEFPVLL-ISEFALVMSAVRLLVMFFPKLRAKWGRFTREKDLVYGLVCAYILMEGALWSGVAAVGVSRTGGVLATLELFSGSTTVVAGVLVG--GRLNKVDDLLHMSTDIRVVGMLLLLMSCVHAGLHYVSMSPMEYKYYTIVLMALSHPPIVWLTNIRPVREVERNIPARRRSRKDFQLPS---PYRRWSTKNIRVGVAADENNNSLPWNGEVYLD-DNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEF-KDL-IADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAALKLEDRKDIFGPAEREIKIVLADNLLNKFLVSDPYTKVVD 434          
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 4.400e-33
Identity = 105/364 (28.85%), Postives = 182/364 (50.00%), Query Frame = 1
Query:   91 AEDGAFELLLVPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAKEPFMMRALVLSCVVLVGALWIACSLFGTQR-VATFAPVIIFFLDTLLILGASLALHGKLRSANDIYHMSREIRVVGALALL--ALGMAVAFSSMS---IRYIMLAWVIVRFQSCIWITNILPIRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMGRSQFRSQLEGVEDA---ESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDA--DYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQD 1149
            A DG   L+  P +L +   A VM   RLLVM+ P +R +WGRF +E  ++  LV + +++ GALW   +  G  R V     + +F   T ++ G  L   G+L   +D+ HMS +IRVVG + LL   +   + + SMS    +Y  +    +     +W+ NI P+  + R     +R       SF    P++  +++ + + +   +  + L    +A   ++ L  IM   PL +AF  +CR++LC ES  FL+D + F   +  + + T + +   +   +AIV  Y+++ S  E+NI S T+  IM+  +   +  L L E+  +   A +E+  VL++NL  KF  +  Y ++ D
Sbjct:   78 ASDGVTSLIEFPALL-ISEFALVMSAVRLLVMFFPKLRAKWGRFTRERDLVYGLVCAYILMEGALWSGVAAVGLSRTVGVLVTLELFTGSTTVVAGVLLG--GRLNKVDDLLHMSTDIRVVGTILLLMTCVHKGLPYLSMSPTEYQYCKITLTALLHPPIVWLINIRPVLEVGRNIPARRRSRK----SFHLPSPFRRRSTKNIRVGVAADEDINTLPWNGEAYLNDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAETSEKSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAALQLEERKDLFGPAEREIKIVLADNLLNKFLVSDPYTKVVD 434          
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5K6R2_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.240e-21
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = 1
Query:  562 TNILPIRM-ILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMGRSQFRSQ------LEGVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFNELSLV 1041
            +NI  IR  +L RR RN   +G +  S  PY+PW+  AS  VA+D    +F S+      +      +  LE I+   PLL+AFE +C+KALC ESLMFL     F  S+    S   DD ++  L  IV KYV+  SP+E+NI+SKT+S I+     +TF  L  V
Sbjct:    7 SNIQSIRASVLPRRRRNNYNNGGIIASLLPYIPWREDASI-VAVDAVGRRFTSRGVSLGNINRSVKLDDALEQILCFTPLLEAFEEFCQKALCIESLMFLKAVMGFRGSVHA--STASDDGNFTLLTDIVQKYVQSGSPFEVNIDSKTKSNILVKITRETFMRLPQV 170          
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.480e-11
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  742 ESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEVAPSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIM 999
            E+ L  IM   PL  AF  +CRKALC ES  FL+D   F  S+  A    +D   Y++ + IV +Y+ ++S +E+NI+S+T+ EI+
Sbjct:   16 ETRLATIMGFLPLEHAFGEFCRKALCHESFQFLVDVSKFKSSVHAAHQGGNDS--YEEFIVIVDEYIEDNSNFEVNIDSRTKKEIL 99          
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Match: A0A6H5KBN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.490e-9
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1
Query:    1 RSPGLVTLSGCSGTLIAVVSVFRILLEVDPAEDGAFELLL-VPMMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRF-AKEPFMMRALVLSCVVLVGALWIACSLFGTQ 315
            RSP L T SG  G ++   +V R+++  D     +  L++ VP+M   + G YVMRG RLLVMYNP  R  WGRF   E  +++ L+++  ++    W A  LFG +
Sbjct:   62 RSPLLATTSGLVGVVLGAFAVARLIVIPDKLVVHSISLIIFVPLMELGFLGPYVMRGIRLLVMYNPATRTHWGRFFTSELAVVKILLVAFGIVEVIAWSAVLLFGLE 168          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1046.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K976_9PHAE3.990e-7038.83RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLA9_ECTSI3.210e-6537.53RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYZ5_ECTSI6.360e-4529.30RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLE7_9PHAE2.710e-3939.08RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FN97_ECTSI1.110e-3743.46RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTR6_ECTSI2.550e-3531.42Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
A0A6H5KX00_9PHAE4.400e-3328.85RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6R2_9PHAE1.240e-2140.12RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K562_9PHAE6.480e-1140.70RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBN3_9PHAE2.490e-938.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1046contigS-firma_F_contig1046:22394..25697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LLA9
Max annot lvl2880.D8LLA9|-
Evalue1.01e-62
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
DescriptionRegulator of G protein signaling domain
COG categoryS
Hectar predicted targeting categorysignal anchor
Exons6
Model size1372
Cds size1062
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1046.652.1prot_S-firma_F_contig1046.652.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1046 22578..25571 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.7291732-UTR-S-firma_F_contig1046:22393..225771622815580.7291732-UTR-S-firma_F_contig1046:22393..22577Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1046 22394..22577 -
1696949431.8231726-UTR-S-firma_F_contig1046:22393..225771696949431.8231726-UTR-S-firma_F_contig1046:22393..22577Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1046 22394..22577 -
1622815580.8066926-UTR-S-firma_F_contig1046:25571..256971622815580.8066926-UTR-S-firma_F_contig1046:25571..25697Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1046 25572..25697 -
1696949431.9369042-UTR-S-firma_F_contig1046:25571..256971696949431.9369042-UTR-S-firma_F_contig1046:25571..25697Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1046 25572..25697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.738781-CDS-S-firma_F_contig1046:22577..227271622815580.738781-CDS-S-firma_F_contig1046:22577..22727Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 22578..22727 -
1696949431.8352373-CDS-S-firma_F_contig1046:22577..227271696949431.8352373-CDS-S-firma_F_contig1046:22577..22727Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 22578..22727 -
1622815580.748152-CDS-S-firma_F_contig1046:23113..233261622815580.748152-CDS-S-firma_F_contig1046:23113..23326Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 23114..23326 -
1696949431.863957-CDS-S-firma_F_contig1046:23113..233261696949431.863957-CDS-S-firma_F_contig1046:23113..23326Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 23114..23326 -
1622815580.7601237-CDS-S-firma_F_contig1046:23864..241261622815580.7601237-CDS-S-firma_F_contig1046:23864..24126Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 23865..24126 -
1696949431.8764703-CDS-S-firma_F_contig1046:23864..241261696949431.8764703-CDS-S-firma_F_contig1046:23864..24126Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 23865..24126 -
1622815580.769689-CDS-S-firma_F_contig1046:24566..246541622815580.769689-CDS-S-firma_F_contig1046:24566..24654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 24567..24654 -
1696949431.8923163-CDS-S-firma_F_contig1046:24566..246541696949431.8923163-CDS-S-firma_F_contig1046:24566..24654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 24567..24654 -
1622815580.7796907-CDS-S-firma_F_contig1046:24809..249671622815580.7796907-CDS-S-firma_F_contig1046:24809..24967Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 24810..24967 -
1696949431.911087-CDS-S-firma_F_contig1046:24809..249671696949431.911087-CDS-S-firma_F_contig1046:24809..24967Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 24810..24967 -
1622815580.7951028-CDS-S-firma_F_contig1046:25380..255711622815580.7951028-CDS-S-firma_F_contig1046:25380..25571Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 25381..25571 -
1696949431.9269109-CDS-S-firma_F_contig1046:25380..255711696949431.9269109-CDS-S-firma_F_contig1046:25380..25571Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 25381..25571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1046.652.1

>prot_S-firma_F_contig1046.652.1 ID=prot_S-firma_F_contig1046.652.1|Name=mRNA_S-firma_F_contig1046.652.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=354bp
MMLTLYTGAYVMRGCRLLVMYNPHMRVRWGRFAKEPFMMRALVLSCVVLV
GALWIACSLFGTQRVATFAPVIIFFLDTLLILGASLALHGKLRSANDIYH
MSREIRVVGALALLALGMAVAFSSMSIRYIMLAWVIVRFQSCIWITNILP
IRMILRRRARNKRESGRLCTSFFPYLPWQTPASRRVAIDMGRSQFRSQLE
GVEDAESVLEFIMRVPPLLQAFEGYCRKALCSESLMFLLDAKAFSKSLEV
APSATDDDADYQQLVAIVGKYVREHSPYEINIESKTRSEIMRTTETKTFN
ELSLVEKSTVLEKAVKEVGQVLSENLCGKFRATKEYRQIQDHANVLGIDE
EVV*
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mRNA from alignment at S-firma_F_contig1046:22394..25697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1046.652.1 ID=mRNA_S-firma_F_contig1046.652.1|Name=mRNA_S-firma_F_contig1046.652.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3304bp|location=Sequence derived from alignment at S-firma_F_contig1046:22394..25697- (Sphaerotrichia firma ET2_F female)
AGATCGCCTGGCCTCGTGACTCTGTCGGGCTGCTCCGGTACCTTGATTGC TGTCGTCTCTGTGTTCCGGATCTTGCTGGAAGTCGACCCGGCGGAAGACG GGGCTTTCGAGTTACTTCTGGTCCCGATGATGCTGACACTCTACACCGGG GCTTACGTCATGCGCGGCTGCCGGCTGCTGGTCATGTACAACCCACACAT GCGAGTTCGCTGGGGACGCTTCGCCAAAGAGCCCTTCATGATGAGGGCCT TGGTACTTTCATGTGTGGTCCTCGTGGGTGCCCTCTGGATTGCCTGCTCC CTGTTCGGCACACAAAGGTCAGGGTCCCAACATATGGTGACAAGGCGACA CGACCGCCGTGCATGGAGGACCCGAGGACATATTCACTTGTATGGAGGTT TCCGGCATGAATATATTCTCTCGAAGGCCGCCGCAGACGTCTCACAGATG CCAACACAGCGAGCGGCAGATCTCGCGAAGAATTCCAGACCTCCCTGTGT ACAATCTATGCCGTGCACAGCTACTCTCTGATGGCTCATGCACTCTCTGC TTGCCTAGCTCGACTCCACCCCGGGGGACTAAGATACATGTGGAAGCGCC TCGTGCCGACTTGTCATTCCCCCGAAAACAAAGTGCAACCCCTACGCCCC CCTACTGATTGCTGTCCACCCGATCTGCTCACCATGGCGATTCCCTGCGA CCATGGACTCTAAATCTACACCCGTTTCAGGGTGGCCACCTTCGCTCCTG TCATCATTTTCTTTTTGGATACACTGCTGATCCTCGGAGCGTCATTGGCG TTGCACGGCAAGCTGAGGAGCGCAAACGACATTTACCACATGTCGCGGGA GATACGAGTAGTCGGTGCCCTCGCCTTGCTCGCCCTGGGTAAGTGAGCGG ATCTCGCCTACCTCAATGTTGCAGTAACTGCACACAGTGGACCTCACCGG GTGTGCCACGAGAAAAACACATACAACGAACGTGACTACCGCTCAACTTC GGCGACCGTTTTCGTGCACCACTGCGTGTTGCTTTCCCTCTAGGTATGGC GGTGGCCTTCTCGTCCATGTCTATCCGGTACATCATGCTCGCGTGGGTTA TAGTTCGGTTCCAGTCTTGTATTTGGATCACGTGAGTGGGAGGAATGTCG TTCTTTTTGTGCCGCCGCGTTACCGGCGAAATGGAGCTGAACACGCGAGC CGTGGCCCACGTTAGTGCGTTTGACAGCGTCAGCTTCTGATGCCCGAATC TCCACGTGTTACTGCATCAAAGCACGTGTTGTGGCACTACTCGCTCTAGA GAAGGAGAAATGGATTGTAGCAAGGCTGGGGCTTTTCCCCCTAGGATAGC CACGACGAAGAGTCCCGATGATGAATTTATTCCCCGTGTGTACTGAGGGC TGCTACCGGCGCTGAATGCCCACGATGCGGACAATACATGCGGCGCGCCG CTCGTCACCAGCTGTGCGGCCGCTTGTTCGGGGAAGGGCCATCCATCAAT CTGCGATGCCCCATCGTTGCGCTCAACTCATTTGTGTGGAAATCCCGCTC TATGCATGTCTGTGTGCGCAGAAACATCCTGCCCATCAGGATGATACTAC GGCGGAGGGCGCGAAACAAGAGAGAGTCCGGCCGCCTCTGCACATCGTTC TTTCCGTACCTGCCGTGGCAAACGCCAGCGAGCCGCAGGGTTGCGATCGA CATGGGGAGGTCACAGTTTCGATCCCAACTTGAAGGCGTTGAGGATGCCG AGAGCGTGCTGGAGTTCATCATGCGCGTCCCACCACTCCTCCAGGCCTTC GAAGGTTACTGCCGCAAGGCCCTCTGTAGCGAGGTGATGCGATGATGCGT CTGTCCGTTAACCACCGGTTCACACCGGTTCGGTTGGTTTCTTGCATGTT CGTAGTGTACCATCCAAAGGAGGACATCTGCTGAAGCGTGCGTGCAGTGA AACGTTCTCTCACGTTCTGATGATCCTCGGATGATGATGTGGTCTCCAAT AGACAGTAGTGAGGAGCCGTGTCGTTCTCGATTTTCCAAGGCCAAGCGAA GTACTAGTTTGTAGGCTGTCGCGGGCCTTGGCGTCGTACGCAGATAGACA ATGGAAGCGCAGGCTGGGGCAGAGCCCTCAGAGTCTCCACTGTGCCAAGC GCTATTCTGCGTATTTGTCCCATATCGCAAGTTAGGTGTATTCAGTTTAT TTCCTTTGGTGGTGTGTTCAGGACAAGGGGGGGCGGGATGGTAGTGCATG TAAGAAATCTACTTTTCAGGGATCGACCCTCAGTTGTTGCTTTTGGAGCC GCAGTTGCAAGGACTTCGTTCTAATTGTTCGGCGTCGCTTCTCTCGTTTC CTCGGGTGTGTGTGTGTGCAGTCACTCATGTTTTTGCTGGATGCGAAGGC GTTCAGCAAATCACTTGAGGTGGCGCCCTCCGCCACTGATGATGATGCCG ACTATCAGCAACTCGTCGCGATCGTGGGCAAGTATGTCCGGGAGCACTCG CCGTATGAAATCAACATCGAGAGCAAGACTAGGAGCGAGATCATGAGGAC GACAGAAACGAAGACCTTCAACGAACTTTCCCTGGTAGGTCCATCCACGG CCGTCTTTCGCCGGGAAGAAGTGTGTTGTGACTTGCGGTCTTGACGTTTC CCCAGTTCCCCGGGCATGATGAGCGGATCCGCTCGAAGGACACAATGATG TACATACTGCAGTAGCAAAAGGACGCAGATTAAATAAAATAGAGCTACGT TGACATGCGATGTATTCACTCTCTCTCAACATATAAATGTCTCCCTTGCT TGGTATTTACCTAAGCATTTTTTTACTGTACCAAGTACTGTTCAGCGTTT AGAGCGATAAAGGGTAACAGACTAAAGCGCCACCCCCCCTAAACTCTGAA GCCCCAAAACTGGGCTCGTGTAATGTCTCTCCCAACTCGATGCTGGTCGC ACATTCGGCAATTTCGTCAGGTGGAAAAATCTACGGTGCTGGAGAAGGCG GTCAAAGAGGTCGGCCAGGTGCTCTCCGAGAATCTCTGTGGCAAATTCCG GGCTACCAAGGAGTACAGGCAGATTCAGGATCACGCGAATGTCCTAGGAA TTGACGAGGAGGTGGTCTAAGCGTGATAGGGTTGCGAACAAGTGGGGCGT GCCCCTTGCTGCTCGCCTGTCGTGATCCTTGCGCACTGCGGCAACTCGAA GGCTTGGCGGCGGTGGCCGGCGCATGCAGACCCCACCCAAAGTACTTGAG AAATCGAAGGCAGCACGTATTCTCGTGTGTTTCCCGTGATTTGCTGTCTT GCGC
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Coding sequence (CDS) from alignment at S-firma_F_contig1046:22394..25697-

>mRNA_S-firma_F_contig1046.652.1 ID=mRNA_S-firma_F_contig1046.652.1|Name=mRNA_S-firma_F_contig1046.652.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2124bp|location=Sequence derived from alignment at S-firma_F_contig1046:22394..25697- (Sphaerotrichia firma ET2_F female)
ATGATGCTGACACTCTACACCGGGGCTTACGTCATGCGCGGCTGCCGGCT
GCTGGTCATGTACAACCCACACATGCGAGTTCGCTGGGGACGCTTCGCCA
AAGAGCCCTTCATGATGAGGGCCTTGGTACTTTCATGTGTGGTCCTCGTG
GGTGCCCTCTGGATTGCCTGCTCCCTGTTCGGCACACAAAGATGATGCTG
ACACTCTACACCGGGGCTTACGTCATGCGCGGCTGCCGGCTGCTGGTCAT
GTACAACCCACACATGCGAGTTCGCTGGGGACGCTTCGCCAAAGAGCCCT
TCATGATGAGGGCCTTGGTACTTTCATGTGTGGTCCTCGTGGGTGCCCTC
TGGATTGCCTGCTCCCTGTTCGGCACACAAAGGGTGGCCACCTTCGCTCC
TGTCATCATTTTCTTTTTGGATACACTGCTGATCCTCGGAGCGTCATTGG
CGTTGCACGGCAAGCTGAGGAGCGCAAACGACATTTACCACATGTCGCGG
GAGATACGAGTAGTCGGTGCCCTCGCCTTGCTCGCCCTGGGGTGGCCACC
TTCGCTCCTGTCATCATTTTCTTTTTGGATACACTGCTGATCCTCGGAGC
GTCATTGGCGTTGCACGGCAAGCTGAGGAGCGCAAACGACATTTACCACA
TGTCGCGGGAGATACGAGTAGTCGGTGCCCTCGCCTTGCTCGCCCTGGGT
ATGGCGGTGGCCTTCTCGTCCATGTCTATCCGGTACATCATGCTCGCGTG
GGTTATAGTTCGGTTCCAGTCTTGTATTTGGATCACGTATGGCGGTGGCC
TTCTCGTCCATGTCTATCCGGTACATCATGCTCGCGTGGGTTATAGTTCG
GTTCCAGTCTTGTATTTGGATCACAAACATCCTGCCCATCAGGATGATAC
TACGGCGGAGGGCGCGAAACAAGAGAGAGTCCGGCCGCCTCTGCACATCG
TTCTTTCCGTACCTGCCGTGGCAAACGCCAGCGAGCCGCAGGGTTGCGAT
CGACATGGGGAGGTCACAGTTTCGATCCCAACTTGAAGGCGTTGAGGATG
CCGAGAGCGTGCTGGAGTTCATCATGCGCGTCCCACCACTCCTCCAGGCC
TTCGAAGGTTACTGCCGCAAGGCCCTCTGTAGCGAGAAACATCCTGCCCA
TCAGGATGATACTACGGCGGAGGGCGCGAAACAAGAGAGAGTCCGGCCGC
CTCTGCACATCGTTCTTTCCGTACCTGCCGTGGCAAACGCCAGCGAGCCG
CAGGGTTGCGATCGACATGGGGAGGTCACAGTTTCGATCCCAACTTGAAG
GCGTTGAGGATGCCGAGAGCGTGCTGGAGTTCATCATGCGCGTCCCACCA
CTCCTCCAGGCCTTCGAAGGTTACTGCCGCAAGGCCCTCTGTAGCGAGTC
ACTCATGTTTTTGCTGGATGCGAAGGCGTTCAGCAAATCACTTGAGGTGG
CGCCCTCCGCCACTGATGATGATGCCGACTATCAGCAACTCGTCGCGATC
GTGGGCAAGTATGTCCGGGAGCACTCGCCGTATGAAATCAACATCGAGAG
CAAGACTAGGAGCGAGATCATGAGGACGACAGAAACGAAGACCTTCAACG
AACTTTCCCTGTCACTCATGTTTTTGCTGGATGCGAAGGCGTTCAGCAAA
TCACTTGAGGTGGCGCCCTCCGCCACTGATGATGATGCCGACTATCAGCA
ACTCGTCGCGATCGTGGGCAAGTATGTCCGGGAGCACTCGCCGTATGAAA
TCAACATCGAGAGCAAGACTAGGAGCGAGATCATGAGGACGACAGAAACG
AAGACCTTCAACGAACTTTCCCTGGTGGAAAAATCTACGGTGCTGGAGAA
GGCGGTCAAAGAGGTCGGCCAGGTGCTCTCCGAGAATCTCTGTGGCAAAT
TCCGGGCTACCAAGGAGTACAGGCAGATTCAGGATCACGCGAATGTCCTA
GGAATTGACGAGGAGGTGGTCTAAGTGGAAAAATCTACGGTGCTGGAGAA
GGCGGTCAAAGAGGTCGGCCAGGTGCTCTCCGAGAATCTCTGTGGCAAAT
TCCGGGCTACCAAGGAGTACAGGCAGATTCAGGATCACGCGAATGTCCTA
GGAATTGACGAGGAGGTGGTCTAA
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