mRNA_S-firma_F_contig1046.648.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1046.648.1
Unique NamemRNA_S-firma_F_contig1046.648.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1046.648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1046contigS-firma_F_contig1046:496..1773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size338
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1046.648.1prot_S-firma_F_contig1046.648.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1046 496..1237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.2126784-CDS-S-firma_F_contig1046:495..6321622815580.2126784-CDS-S-firma_F_contig1046:495..632Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 496..632 -
1696949431.4340248-CDS-S-firma_F_contig1046:495..6321696949431.4340248-CDS-S-firma_F_contig1046:495..632Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 496..632 -
1622815580.228152-CDS-S-firma_F_contig1046:1155..12371622815580.228152-CDS-S-firma_F_contig1046:1155..1237Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 1156..1237 -
1696949431.4451437-CDS-S-firma_F_contig1046:1155..12371696949431.4451437-CDS-S-firma_F_contig1046:1155..1237Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1046 1156..1237 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.2445252-UTR-S-firma_F_contig1046:1237..12461622815580.2445252-UTR-S-firma_F_contig1046:1237..1246Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1046 1238..1246 -
1696949431.4565396-UTR-S-firma_F_contig1046:1237..12461696949431.4565396-UTR-S-firma_F_contig1046:1237..1246Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1046 1238..1246 -
1622815580.2587018-UTR-S-firma_F_contig1046:1665..17731622815580.2587018-UTR-S-firma_F_contig1046:1665..1773Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1046 1666..1773 -
1696949431.4665456-UTR-S-firma_F_contig1046:1665..17731696949431.4665456-UTR-S-firma_F_contig1046:1665..1773Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1046 1666..1773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1046.648.1

>prot_S-firma_F_contig1046.648.1 ID=prot_S-firma_F_contig1046.648.1|Name=mRNA_S-firma_F_contig1046.648.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=73bp
MAPILSKLLGIAGLLASGNSVASAQTTAGSLAPTAAPVRGGGSDGGGGGS
GWGGSAPTARGSPGFTVPSAAPT
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mRNA from alignment at S-firma_F_contig1046:496..1773-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1046.648.1 ID=mRNA_S-firma_F_contig1046.648.1|Name=mRNA_S-firma_F_contig1046.648.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1278bp|location=Sequence derived from alignment at S-firma_F_contig1046:496..1773- (Sphaerotrichia firma ET2_F female)
CAAGACACTGCAAATACCGCATAGCAGTCCCACACACCAAAAGAGGCACC
ACACTTCATCGGACAAACCAAGCTCGCGAAACAACAACTGCCGCCGTCCT
CCTTCAAGGTATGAAGTCTTCTTCGCAGTTCGCGTGATCAGGGGAGGGTT
CCACGGACACAATATCTCACCAATTGATGTTGCTGGAAATCTCGTCGCCA
CAAGCCCTGGGATGCCACTGGCGAAAATGGCAACTGCTGCCCTCAAGCAG
CAGGTTGGTGGCATAAAGAGACGACTTATTTCTCCCACAACAGAGCGAGT
AAGGACTCGGTTTTCCTCTGCTCATTTCTGCCTTACCTTCTGAGTATGCA
GGTCTACCGAGGAGGATGAAGAATGGCTGATGAACACCAGAACACAAAAG
CGTGTTCAACTATATAATGCAAGTCAGGTTTTCAACTCTCCAGTGACAGC
AACCCGACGCGAATGCCCTACACACTTACTCCCAGCGTCTCATCTGTTGC
CCTCCAACGATTTCGTCACCCCTTCAGCAAGCAACGATGGCACCAATCTT
GTCCAAGCTTCTTGGAATCGCTGGGCTTCTTGCCTCGGGCAACTCGGTAG
CCAGCGCGCAGACTACCGGTACGTGACCCAGCTCCCTCCCATTACGAACA
TACGTACGAGAAAGATGACAGCACAGCACTGGCTGTACACGTCGACGTTG
CGGCAAGACGTACACACACGTCGATGTCTCCGTCGAACAAGGGTAGATAG
TTTGAGCATCGTCAGCGACGGTGGTTGCCGCAGTGACAACGGTGGCCCCT
CGTCGTCAGTCTCCACGCTTCAAACTTCTTCGCTGCTGACTCTCTGCTAC
CTATAGAGCGATTACAATGATACATGGCTTGAGCTTCTCCGACAGTCTTT
TCAAGTTCAGACCTACGTGCGTCTCATAAAGTTTGACGTATGAATACGCA
TTTGCCGACACGGTTCTCAGAGGTTGTACGGCAACTTCAAAGAGAGTCAA
TTCCGCAGAGTTTCTAGCACGTAAGATAGATATTTCTAACCTCGCCCCTC
TCTCGCCTCACCGTGTGTGCTCACCGTGTCCGTCTCTAACGTCCTTTGTA
TGCCAACTCCGACTGCACCCCCCACCCTATTTCCACCTAAGCCGGCTCCT
TGGCGCCGACTGCGGCCCCCGTTCGCGGAGGCGGTAGTGACGGCGGTGGC
GGTGGTAGTGGTTGGGGTGGCTCTGCACCGACGGCCCGTGGATCACCCGG
TTTCACAGTTCCTTCGGCTGCACCCACG
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Coding sequence (CDS) from alignment at S-firma_F_contig1046:496..1773-

>mRNA_S-firma_F_contig1046.648.1 ID=mRNA_S-firma_F_contig1046.648.1|Name=mRNA_S-firma_F_contig1046.648.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=438bp|location=Sequence derived from alignment at S-firma_F_contig1046:496..1773- (Sphaerotrichia firma ET2_F female)
ATGGCACCAATCTTGTCCAAGCTTCTTGGAATCGCTGGGCTTCTTGCCTC
GGGCAACTCGGTAGCCAGCGCGCAGACTACCGATGGCACCAATCTTGTCC
AAGCTTCTTGGAATCGCTGGGCTTCTTGCCTCGGGCAACTCGGTAGCCAG
CGCGCAGACTACCGCCGGCTCCTTGGCGCCGACTGCGGCCCCCGTTCGCG
GAGGCGGTAGTGACGGCGGTGGCGGTGGTAGTGGTTGGGGTGGCTCTGCA
CCGACGGCCCGTGGATCACCCGGTTTCACAGTTCCTTCGGCTGCACCCAC
GCCGGCTCCTTGGCGCCGACTGCGGCCCCCGTTCGCGGAGGCGGTAGTGA
CGGCGGTGGCGGTGGTAGTGGTTGGGGTGGCTCTGCACCGACGGCCCGTG
GATCACCCGGTTTCACAGTTCCTTCGGCTGCACCCACG
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