mRNA_S-firma_F_contig10454.645.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10454.645.1
Unique NamemRNA_S-firma_F_contig10454.645.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10454.645.1 vs. uniprot
Match: A0A6H5LAT3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.290e-25
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:    3 VLTGDQPWAGLTLEEVSGKVSRGERPPLSFEATSLEGYDSFGDLVRLLWAQDPNARPALQDVARLLRVPE 212
            VLTG QPW GLTLEEVS +VSRGERP LSF  T+LE YD+FGDLVRLLWAQDP ARPALQDVARLLRVP+
Sbjct:  988 VLTGSQPWEGLTLEEVSNRVSRGERPALSFAPTALEDYDNFGDLVRLLWAQDPTARPALQDVARLLRVPD 1057
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BLAST of mRNA_S-firma_F_contig10454.645.1 vs. uniprot
Match: D7FXM4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.060e-24
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:    3 VLTGDQPWAGLTLEEVSGKVSRGERPPLSFEATSLEGYDSFGDLVRLLWAQDPNARPALQDVARLLRVPE 212
            VLTG QPW GLTLEEVS +VSRGERP LSF  T+LE Y++FGDLVRLLWAQDP ARPALQDVARLLRVPE
Sbjct: 1025 VLTGSQPWEGLTLEEVSNRVSRGERPALSFAPTALEDYENFGDLVRLLWAQDPTARPALQDVARLLRVPE 1094
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10454.645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAT3_9PHAE8.290e-2582.86Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FXM4_ECTSI1.060e-2482.86Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10454contigS-firma_F_contig10454:3389..5097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size1686
Cds size1686
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.9647124-CDS-S-firma_F_contig10454:3388..48361622815579.9647124-CDS-S-firma_F_contig10454:3388..4836Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10454 3389..4836 -
1696949431.3117564-CDS-S-firma_F_contig10454:3388..48361696949431.3117564-CDS-S-firma_F_contig10454:3388..4836Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10454 3389..4836 -
1622815579.9770381-CDS-S-firma_F_contig10454:4859..50971622815579.9770381-CDS-S-firma_F_contig10454:4859..5097Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10454 4860..5097 -
1696949431.3252172-CDS-S-firma_F_contig10454:4859..50971696949431.3252172-CDS-S-firma_F_contig10454:4859..5097Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10454 4860..5097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10454.645.1prot_S-firma_F_contig10454.645.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10454 3389..5097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10454.645.1

>prot_S-firma_F_contig10454.645.1 ID=prot_S-firma_F_contig10454.645.1|Name=mRNA_S-firma_F_contig10454.645.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=562bp
RCLPATNRGQASRLKKSRARCPAGSGRRCRSRRPASRATTASATSCASCG
RRTRTPGRRCRTWRGFCACPSRSRAVLRRPDVVPGEADTQQDTTPEEEEV
GTGGDGDGDGDGDGEEVAVSCANGGLQPLLDAGGEGDTLAEDADAEAEAE
AEAEDCPDSAMASGGEEAAARGSGDDREASSAREVTEDADVPAPQEAEKD
SAEQAAAAAAAAAAVAVAAAPLSTPAVHSAIWGEEEDERDGGAAADPAPA
SAATTMDAGHAGTTQCAAAAVEADRGELPASTETGTGGESGSDGDASLVE
TASTHNAYDAALGARPWVVPEEEASVAAERPAVADATPVEAGAGSFSAPE
AGAFAEVGADAPPEAVAAAAATAAAGGESATAATPARSRQHLPPVTADSP
ARPIVSSSPFGSTDSSPLYRAEYGNGIGEARAPAAGGPGILMPRAGPARM
GTLFSPPPPSNSSSDMDDDGGYFSANEERSPAARASAAATREAAAEAAAV
AAAAAAATGIKSNLAPLATVSSDATPGLKTFMPTVSASGGGGGGGGGVFI
SSSSSSSNSGGG
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mRNA from alignment at S-firma_F_contig10454:3389..5097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10454.645.1 ID=mRNA_S-firma_F_contig10454.645.1|Name=mRNA_S-firma_F_contig10454.645.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1709bp|location=Sequence derived from alignment at S-firma_F_contig10454:3389..5097- (Sphaerotrichia firma ET2_F female)
AGGTGCTTACCGGCGACCAACCGTGGGCAGGCCTCACGCTTGAAGAAGTC
TCGGGCAAGGTGTCCCGCGGGGAGCGGCCGCCGCTGTCGTTCGAGGCGAC
CAGCCTCGAGGGCTACGACAGCTTCGGCGACCTCGTGCGCCTCCTGTGGG
CGCAGGACCCGAACGCCCGGCCGGCGCTGCAGGACGTGGCGCGGCTTCTG
CGCGTGCCCGAGCCGGAGCCGCGCCGTTTTGCGCAGGCGCGGGCCGAGCC
GGAGCCCGCAGCGGACGTCGTGCCGGGTGAAGCGGACACCCAGCAGGACA
CCACGCCCGAGGAAGAAGAGGTTGGCACCGGTGGTGACGGTGATGGCGAT
GGCGATGGCGATGGCGAAGAAGTCGCCGTGTCGTGCGCGAACGGCGGGCT
GCAGCCGTTACTCGACGCGGGCGGAGAAGGCGACACGCTGGCCGAGGACG
CGGACGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGACTGCCCCGATTCG
GCCATGGCTAGCGGTGGCGAGGAAGCCGCAGCCCGCGGGAGCGGAGACGA
TCGTGAAGCGTCCTCGGCCCGAGAGGTAACGGAAGATGCAGATGTTCCGG
CCCCTCAGGAGGCCGAAAAAGATTCGGCTGAGCAAGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCAGTGGCAGTGGCGGCGGCGCCATTGTCCACGCCAGC
GGTTCACAGCGCGATTTGGGGCGAGGAAGAAGACGAGCGCGATGGTGGGG
CTGCGGCGGATCCCGCGCCTGCTTCTGCGGCGACGACCATGGACGCCGGG
CACGCCGGGACGACACAATGTGCGGCCGCCGCCGTTGAGGCAGACCGGGG
CGAGCTGCCGGCTTCTACAGAAACCGGGACGGGGGGGGAGTCTGGCTCCG
ACGGCGACGCTTCTTTGGTCGAAACGGCGAGCACGCACAACGCGTACGAC
GCAGCCTTGGGCGCCCGACCCTGGGTTGTCCCCGAAGAGGAAGCTTCGGT
GGCGGCGGAGCGGCCGGCTGTTGCCGATGCCACTCCCGTCGAGGCCGGCG
CCGGCTCCTTCTCCGCCCCGGAGGCAGGAGCGTTTGCGGAGGTAGGGGCA
GACGCACCGCCGGAGGCAGTCGCAGCAGCCGCAGCAACAGCAGCAGCCGG
TGGGGAGAGCGCAACCGCTGCGACCCCCGCCCGCTCACGGCAGCACCTGC
CGCCGGTGACCGCGGACTCTCCGGCGCGGCCCATCGTCAGCTCTTCACCC
TTCGGGTCGACAGACTCGTCTCCGCTGTACCGAGCCGAGTACGGGAACGG
GATCGGGGAGGCACGGGCGCCGGCGGCGGGAGGCCCGGGGATCTTGATGC
CGCGGGCGGGGCCGGCAAGGATGGGGACCTTGTTTTCCCCGCCTCCTCCG
TCCAACAGCAGCAGCGACATGGACGATGACGGGGGTTACTTCTCGGCCAA
CGAGGAGAGGTCTCCGGCCGCCCGTGCCTCGGCGGCGGCGACGAGGGAGG
CGGCGGCGGAGGCGGCAGCGGTGGCGGCGGCGGCAGCAGCAGCGACAGGA
ATAAAGAGCAACCTCGCGCCGCTCGCGACGGTCTCCTCCGATGCAACACC
CGGGTTGAAGACCTTCATGCCCACCGTTTCGGCTTCTGGTGGTGGTGGTG
GTGGTGGCGGCGGTGTGTTCATCAGCAGCAGCAGCAGCAGCAGCAACAGC
GGCGGCGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10454:3389..5097-

>mRNA_S-firma_F_contig10454.645.1 ID=mRNA_S-firma_F_contig10454.645.1|Name=mRNA_S-firma_F_contig10454.645.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3372bp|location=Sequence derived from alignment at S-firma_F_contig10454:3389..5097- (Sphaerotrichia firma ET2_F female)
AGGTGCTTACCGGCGACCAACCGTGGGCAGGCCTCACGCTTGAAGAAGTC
TCGGGCAAGGTGTCCCGCGGGGAGCGGCCGCCGCTGTCGTTCGAGGCGAC
CAGCCTCGAGGGCTACGACAGCTTCGGCGACCTCGTGCGCCTCCTGTGGG
CGCAGGACCCGAACGCCCGGCCGGCGCTGCAGGACGTGGCGCGGCTTCTG
CGCGTGCCCGAGCCGGAGCCGCGCCGTTTTGCGCAGGCAGGTGCTTACCG
GCGACCAACCGTGGGCAGGCCTCACGCTTGAAGAAGTCTCGGGCAAGGTG
TCCCGCGGGGAGCGGCCGCCGCTGTCGTTCGAGGCGACCAGCCTCGAGGG
CTACGACAGCTTCGGCGACCTCGTGCGCCTCCTGTGGGCGCAGGACCCGA
ACGCCCGGCCGGCGCTGCAGGACGTGGCGCGGCTTCTGCGCGTGCCCGAG
CCGGAGCCGCGCCGTTTTGCGCAGGCCGGACGTCGTGCCGGGTGAAGCGG
ACACCCAGCAGGACACCACGCCCGAGGAAGAAGAGGTTGGCACCGGTGGT
GACGGTGATGGCGATGGCGATGGCGATGGCGAAGAAGTCGCCGTGTCGTG
CGCGAACGGCGGGCTGCAGCCGTTACTCGACGCGGGCGGAGAAGGCGACA
CGCTGGCCGAGGACGCGGACGCGGAGGCGGAGGCGGAGGCGGAGGCGGAG
GACTGCCCCGATTCGGCCATGGCTAGCGGTGGCGAGGAAGCCGCAGCCCG
CGGGAGCGGAGACGATCGTGAAGCGTCCTCGGCCCGAGAGGTAACGGAAG
ATGCAGATGTTCCGGCCCCTCAGGAGGCCGAAAAAGATTCGGCTGAGCAA
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGGCAGTGGCGGCGGCGCC
ATTGTCCACGCCAGCGGTTCACAGCGCGATTTGGGGCGAGGAAGAAGACG
AGCGCGATGGTGGGGCTGCGGCGGATCCCGCGCCTGCTTCTGCGGCGACG
ACCATGGACGCCGGGCACGCCGGGACGACACAATGTGCGGCCGCCGCCGT
TGAGGCAGACCGGGGCGAGCTGCCGGCTTCTACAGAAACCGGGACGGGGG
GGGAGTCTGGCTCCGACGGCGACGCTTCTTTGGTCGAAACGGCGAGCACG
CACAACGCGTACGACGCAGCCTTGGGCGCCCGACCCTGGGTTGTCCCCGA
AGAGGAAGCTTCGGTGGCGGCGGAGCGGCCGGCTGTTGCCGATGCCACTC
CCGTCGAGGCCGGCGCCGGCTCCTTCTCCGCCCCGGAGGCAGGAGCGTTT
GCGGAGGTAGGGGCAGACGCACCGCCGGAGGCAGTCGCAGCAGCCGCAGC
AACAGCAGCAGCCGGTGGGGAGAGCGCAACCGCTGCGACCCCCGCCCGCT
CACGGCAGCACCTGCCGCCGGTGACCGCGGACTCTCCGGCGCGGCCCATC
GTCAGCTCTTCACCCTTCGGGTCGACAGACTCGTCTCCGCTGTACCGAGC
CGAGTACGGGAACGGGATCGGGGAGGCACGGGCGCCGGCGGCGGGAGGCC
CGGGGATCTTGATGCCGCGGGCGGGGCCGGCAAGGATGGGGACCTTGTTT
TCCCCGCCTCCTCCGTCCAACAGCAGCAGCGACATGGACGATGACGGGGG
TTACTTCTCGGCCAACGAGGAGAGGTCTCCGGCCGCCCGTGCCTCGGCGG
CGGCGACGAGGGAGGCGGCGGCGGAGGCGGCAGCGGTGGCGGCGGCGGCA
GCAGCAGCGACAGGAATAAAGAGCAACCTCGCGCCGCTCGCGACGGTCTC
CTCCGATGCAACACCCGGGTTGAAGACCTTCATGCCCACCGTTTCGGCTT
CTGGTGGTGGTGGTGGTGGTGGCGGCGGTGTGTTCATCAGCAGCAGCAGC
AGCAGCAGCAACAGCGGCGGCGGCCGGACGTCGTGCCGGGTGAAGCGGAC
ACCCAGCAGGACACCACGCCCGAGGAAGAAGAGGTTGGCACCGGTGGTGA
CGGTGATGGCGATGGCGATGGCGATGGCGAAGAAGTCGCCGTGTCGTGCG
CGAACGGCGGGCTGCAGCCGTTACTCGACGCGGGCGGAGAAGGCGACACG
CTGGCCGAGGACGCGGACGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGA
CTGCCCCGATTCGGCCATGGCTAGCGGTGGCGAGGAAGCCGCAGCCCGCG
GGAGCGGAGACGATCGTGAAGCGTCCTCGGCCCGAGAGGTAACGGAAGAT
GCAGATGTTCCGGCCCCTCAGGAGGCCGAAAAAGATTCGGCTGAGCAAGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGGCAGTGGCGGCGGCGCCAT
TGTCCACGCCAGCGGTTCACAGCGCGATTTGGGGCGAGGAAGAAGACGAG
CGCGATGGTGGGGCTGCGGCGGATCCCGCGCCTGCTTCTGCGGCGACGAC
CATGGACGCCGGGCACGCCGGGACGACACAATGTGCGGCCGCCGCCGTTG
AGGCAGACCGGGGCGAGCTGCCGGCTTCTACAGAAACCGGGACGGGGGGG
GAGTCTGGCTCCGACGGCGACGCTTCTTTGGTCGAAACGGCGAGCACGCA
CAACGCGTACGACGCAGCCTTGGGCGCCCGACCCTGGGTTGTCCCCGAAG
AGGAAGCTTCGGTGGCGGCGGAGCGGCCGGCTGTTGCCGATGCCACTCCC
GTCGAGGCCGGCGCCGGCTCCTTCTCCGCCCCGGAGGCAGGAGCGTTTGC
GGAGGTAGGGGCAGACGCACCGCCGGAGGCAGTCGCAGCAGCCGCAGCAA
CAGCAGCAGCCGGTGGGGAGAGCGCAACCGCTGCGACCCCCGCCCGCTCA
CGGCAGCACCTGCCGCCGGTGACCGCGGACTCTCCGGCGCGGCCCATCGT
CAGCTCTTCACCCTTCGGGTCGACAGACTCGTCTCCGCTGTACCGAGCCG
AGTACGGGAACGGGATCGGGGAGGCACGGGCGCCGGCGGCGGGAGGCCCG
GGGATCTTGATGCCGCGGGCGGGGCCGGCAAGGATGGGGACCTTGTTTTC
CCCGCCTCCTCCGTCCAACAGCAGCAGCGACATGGACGATGACGGGGGTT
ACTTCTCGGCCAACGAGGAGAGGTCTCCGGCCGCCCGTGCCTCGGCGGCG
GCGACGAGGGAGGCGGCGGCGGAGGCGGCAGCGGTGGCGGCGGCGGCAGC
AGCAGCGACAGGAATAAAGAGCAACCTCGCGCCGCTCGCGACGGTCTCCT
CCGATGCAACACCCGGGTTGAAGACCTTCATGCCCACCGTTTCGGCTTCT
GGTGGTGGTGGTGGTGGTGGCGGCGGTGTGTTCATCAGCAGCAGCAGCAG
CAGCAGCAACAGCGGCGGCGGC
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