mRNA_S-firma_F_contig10442.627.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10442.627.1
Unique NamemRNA_S-firma_F_contig10442.627.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A7S1CCX3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCX3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.190e-27
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 PFKASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            P K+S++EVVPTVGFSVE F+K  L F AFDMSG GRYRSLWE YY D  AII+V+DSTDK+RMCVAK
Sbjct:   39 PKKSSSYEVVPTVGFSVESFSKNGLAFTAFDMSGQGRYRSLWETYYADVQAIIYVLDSTDKVRMCVAK 106          
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A7S0WXA2_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WXA2_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 8.700e-27
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    7 KASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            K +  EV PTVGFSVE+F KG L F  FDMSG GRYR+LWEQYY+DAHAII+V+D++DK+R+CVAK
Sbjct:    6 KGAPAEVTPTVGFSVENFQKGPLYFTVFDMSGAGRYRNLWEQYYKDAHAIIYVIDTSDKLRLCVAK 71          
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A6S9ITP1_HETAK (ADP-ribosylation factor-like protein 6 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ITP1_HETAK)

HSP 1 Score: 103 bits (258), Expect = 2.380e-26
Identity = 48/68 (70.59%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 PFKASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            P KA+TFE  PTVGF VE F+K  L F  FDMSG  RYRSLWE YYRD  A+IFV+DSTD+IRMCVAK
Sbjct:   52 PKKATTFEATPTVGFQVEEFSKNSLNFTIFDMSGQARYRSLWEHYYRDVEAVIFVLDSTDRIRMCVAK 119          
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A7S0RWP1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RWP1_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 2.440e-26
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    7 KASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            K +  EV PTVGFSVE+F KG L F  FDMSG GRYR+LWEQYY+DAHAII+V+D++DK+R+CVAK
Sbjct:   45 KGAPAEVTPTVGFSVENFQKGPLYFTVFDMSGAGRYRNLWEQYYKDAHAIIYVIDTSDKLRLCVAK 110          
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A7S2V202_9STRA (ADP-ribosylation factor-like protein 6 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V202_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.570e-26
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 PFKASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            P KA+TFEV PTVGF VE F+K  L F  FDMSG  RYRSLWE YYRD  AI+FV+DSTD+IR+CVAK
Sbjct:   39 PKKATTFEVTPTVGFQVEEFSKNNLNFTIFDMSGQARYRSLWEHYYRDVQAIMFVLDSTDRIRLCVAK 106          
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A7S3H1V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1V6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.030e-25
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 PFKASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            P KA+TFEV PTVGF VE F+K  + F  +DMSG GRYR+LWE YY D  AIIFV+DSTD++RMCVAK
Sbjct:   38 PKKAATFEVTPTVGFQVEEFSKNNVNFTVYDMSGQGRYRNLWEHYYSDVEAIIFVLDSTDRLRMCVAK 105          
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A6T7CD24_9EUKA (ADP-ribosylation factor-like protein 6 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A6T7CD24_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 3.260e-25
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 PFKASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            P KA++ EVVPTVGF+VE+FTK  L F  FDMSG GRYR+LWE YY++   IIF +DSTDKIRMCVAK
Sbjct:   59 PRKAASAEVVPTVGFAVENFTKNNLTFTVFDMSGQGRYRNLWEHYYKEVAGIIFCIDSTDKIRMCVAK 126          
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A8J5X8L9_DIALT (ADP-ribosylation factor-like protein 6 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8L9_DIALT)

HSP 1 Score: 100 bits (248), Expect = 5.550e-25
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 PFKASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            P K +  E+VPTVGF+VE F K  L F  FDMSG GRYRSLWE YY+D   I+FVVDSTDKIRMCVAK
Sbjct:   39 PKKTAATELVPTVGFAVEEFAKNNLNFTVFDMSGQGRYRSLWEHYYKDVTGIMFVVDSTDKIRMCVAK 106          
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A1Y1HJS7_KLENI (ADP-ribosylation factor family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HJS7_KLENI)

HSP 1 Score: 99.8 bits (247), Expect = 7.860e-25
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 PFKASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            P KA T +VVPT+GF VE F K  ++F AFDMSG GRYRSLWE Y++DA A+IFV+D+TD +RMCVAK
Sbjct:   39 PKKARTADVVPTIGFQVESFLKHGIQFTAFDMSGAGRYRSLWEAYFKDAQAVIFVIDATDLVRMCVAK 106          
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Match: A0A7S0HPL8_9EUKA (ADP-ribosylation factor-like protein 6 (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HPL8_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 1.030e-24
Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 PFKASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAHAIIFVVDSTDKIRMCVAK 204
            P K+++ EVVPTVGFSVE F KG L F  FDMSG GRYR+LWE YY+D   IIF +DS DKIRMCVA+
Sbjct:   39 PKKSTSTEVVPTVGFSVEEFAKGNLGFTVFDMSGQGRYRNLWEHYYKDCGGIIFTIDSCDKIRMCVAR 106          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10442.627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CCX3_9STRA3.190e-2773.53Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0WXA2_9CHLO8.700e-2769.70Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A6S9ITP1_HETAK2.380e-2670.59ADP-ribosylation factor-like protein 6 n=1 Tax=Het... [more]
A0A7S0RWP1_9CHLO2.440e-2669.70Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S2V202_9STRA2.570e-2670.59ADP-ribosylation factor-like protein 6 n=1 Tax=Fib... [more]
A0A7S3H1V6_9STRA1.030e-2567.65Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6T7CD24_9EUKA3.260e-2569.12ADP-ribosylation factor-like protein 6 n=1 Tax=Coc... [more]
A0A8J5X8L9_DIALT5.550e-2569.12ADP-ribosylation factor-like protein 6 n=1 Tax=Dia... [more]
A0A1Y1HJS7_KLENI7.860e-2566.18ADP-ribosylation factor family protein n=1 Tax=Kle... [more]
A0A7S0HPL8_9EUKA1.030e-2467.65ADP-ribosylation factor-like protein 6 (Fragment) ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10442contigS-firma_F_contig10442:80..283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog115417.EPrPW00000024453
PFAMsArf
Max annot lvl121069|Pythiales
Evalue5.55e-25
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota,1MG6Y@121069|Pythiales
DescriptionADP-ribosylation factor family. Source PGD
COG categoryU
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.522538-CDS-S-firma_F_contig10442:79..2831622815578.522538-CDS-S-firma_F_contig10442:79..283Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10442 80..283 +
1696949430.469993-CDS-S-firma_F_contig10442:79..2831696949430.469993-CDS-S-firma_F_contig10442:79..283Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10442 80..283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10442.627.1prot_S-firma_F_contig10442.627.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10442 80..283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10442.627.1

>prot_S-firma_F_contig10442.627.1 ID=prot_S-firma_F_contig10442.627.1|Name=mRNA_S-firma_F_contig10442.627.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=68bp
PFKASTFEVVPTVGFSVEHFTKGKLKFEAFDMSGVGRYRSLWEQYYRDAH
AIIFVVDSTDKIRMCVAK
back to top

mRNA from alignment at S-firma_F_contig10442:80..283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10442.627.1 ID=mRNA_S-firma_F_contig10442.627.1|Name=mRNA_S-firma_F_contig10442.627.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=204bp|location=Sequence derived from alignment at S-firma_F_contig10442:80..283+ (Sphaerotrichia firma ET2_F female)
CCATTCAAGGCAAGCACGTTTGAGGTGGTGCCCACCGTCGGGTTTAGCGT GGAGCACTTCACCAAGGGCAAGCTCAAGTTTGAGGCATTTGACATGAGTG GCGTCGGCCGCTACCGGTCATTGTGGGAGCAGTACTACAGGGACGCACAC GCCATCATCTTCGTTGTGGACTCCACGGACAAGATTCGCATGTGTGTTGC AAAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10442:80..283+

>mRNA_S-firma_F_contig10442.627.1 ID=mRNA_S-firma_F_contig10442.627.1|Name=mRNA_S-firma_F_contig10442.627.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=408bp|location=Sequence derived from alignment at S-firma_F_contig10442:80..283+ (Sphaerotrichia firma ET2_F female)
CCATTCAAGGCAAGCACGTTTGAGGTGGTGCCCACCGTCGGGTTTAGCGT
GGAGCACTTCACCAAGGGCAAGCTCAAGTTTGAGGCATTTGACATGAGTG
GCGTCGGCCGCTACCGGTCATTGTGGGAGCAGTACTACAGGGACGCACAC
GCCATCATCTTCGTTGTGGACTCCACGGACAAGATTCGCATGTGTGTTGC
AAAGCCATTCAAGGCAAGCACGTTTGAGGTGGTGCCCACCGTCGGGTTTA
GCGTGGAGCACTTCACCAAGGGCAAGCTCAAGTTTGAGGCATTTGACATG
AGTGGCGTCGGCCGCTACCGGTCATTGTGGGAGCAGTACTACAGGGACGC
ACACGCCATCATCTTCGTTGTGGACTCCACGGACAAGATTCGCATGTGTG
TTGCAAAG
back to top