mRNA_S-firma_F_contig10429.613.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10429.613.1
Unique NamemRNA_S-firma_F_contig10429.613.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10429.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10429contigS-firma_F_contig10429:1706..2659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.9441445-CDS-S-firma_F_contig10429:1707..20061622815576.9441445-CDS-S-firma_F_contig10429:1707..2006Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10429 1708..2006 -
1696949429.279473-CDS-S-firma_F_contig10429:1707..20061696949429.279473-CDS-S-firma_F_contig10429:1707..2006Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10429 1708..2006 -
1622815576.955852-CDS-S-firma_F_contig10429:2601..26591622815576.955852-CDS-S-firma_F_contig10429:2601..2659Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10429 2602..2659 -
1696949429.2964363-CDS-S-firma_F_contig10429:2601..26591696949429.2964363-CDS-S-firma_F_contig10429:2601..2659Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10429 2602..2659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10429.613.1prot_S-firma_F_contig10429.613.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10429 1708..2659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10429.613.1

>prot_S-firma_F_contig10429.613.1 ID=prot_S-firma_F_contig10429.613.1|Name=mRNA_S-firma_F_contig10429.613.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=119bp
PAFAFGGKDRITALQIQLVEQAPTARIVMVPRRRDGGSRERVSASFNPLL
RVLVATLATAAAGTTTCGALQSPRSTLRGHRRCGGGNPTAAWGSAAPGAV
RARQQSRWGRSGAARATPT
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mRNA from alignment at S-firma_F_contig10429:1706..2659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10429.613.1 ID=mRNA_S-firma_F_contig10429.613.1|Name=mRNA_S-firma_F_contig10429.613.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=954bp|location=Sequence derived from alignment at S-firma_F_contig10429:1706..2659- (Sphaerotrichia firma ET2_F female)
CCCGCTTTCGCATTCGGTGGGAAGGATCGAATCACCGCGCTCCAAATTCA
GCTGGTGGGTGAGTAGGGAGCCGTCGGACGTGATCAAACCGAGCGGCCCG
CGCGTACGTGTGAAGTCAACAATCAATGTAAATTCTGTATCTCCGTCACC
GCCAATGACGTGATAACCTCACCGGTTTCGGCCAGAATCTGGCAGCCTTC
TCGCAGGCTGCGTGTGAATCGATAGCTTCGTACGAAGACCTGTCTGAGGG
GAAGGGAGGGCTGTCGTTGGGGGGGAAGACGCTGCTGCATGCCCCTTAGA
CGATCGTTGGGTTGCCTCGTGACGGATCATACCCCGCTGCCGACGTGACG
CGCTTCATCAACCAAGGTTGAGATACCCAGGAAGGTAGACTCGAGCGATC
AATTGCAAACACATCGGCTGCTGTTGTTTTTTTCTCGGGAGAGAGACAGG
CATGCGTTTGCGACCCCCAAGTAGTCTAAATATCCAGCAAATAAATGCTG
CGCCATTTTTTTTCCGCGCCTACCCCAACCGCCACCGAGAGGAACAAATC
GTGAACGTTCGTGAGTGTTGTTCATTTCGCCGACCTGCTCTCGCTCTCTC
GCCTCGGCCTTCCCCACCCGTCCCTCTCGCCGGCCTGTGCGTCCACCCAC
CAGAGCAAGCGCCAACCGCCCGCATCGTCATGGTGCCGCGAAGGCGAGAC
GGGGGGAGCCGAGAGCGCGTGTCGGCCTCCTTCAACCCGTTGTTGCGCGT
TCTCGTCGCAACCTTGGCCACCGCCGCCGCCGGCACAACAACCTGTGGTG
CACTTCAATCACCACGGTCTACACTACGCGGGCACCGTCGCTGTGGCGGC
GGCAACCCTACGGCGGCGTGGGGATCCGCCGCCCCCGGGGCTGTCCGAGC
GAGGCAGCAGTCGCGGTGGGGGCGGAGTGGTGCAGCTAGAGCGACACCGA
CGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10429:1706..2659-

>mRNA_S-firma_F_contig10429.613.1 ID=mRNA_S-firma_F_contig10429.613.1|Name=mRNA_S-firma_F_contig10429.613.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=714bp|location=Sequence derived from alignment at S-firma_F_contig10429:1706..2659- (Sphaerotrichia firma ET2_F female)
CCCGCTTTCGCATTCGGTGGGAAGGATCGAATCACCGCGCTCCAAATTCA
GCTGGTGGCCCGCTTTCGCATTCGGTGGGAAGGATCGAATCACCGCGCTC
CAAATTCAGCTGGTGGAGCAAGCGCCAACCGCCCGCATCGTCATGGTGCC
GCGAAGGCGAGACGGGGGGAGCCGAGAGCGCGTGTCGGCCTCCTTCAACC
CGTTGTTGCGCGTTCTCGTCGCAACCTTGGCCACCGCCGCCGCCGGCACA
ACAACCTGTGGTGCACTTCAATCACCACGGTCTACACTACGCGGGCACCG
TCGCTGTGGCGGCGGCAACCCTACGGCGGCGTGGGGATCCGCCGCCCCCG
GGGCTGTCCGAGCGAGGCAGCAGTCGCGGTGGGGGCGGAGTGGTGCAGCT
AGAGCGACACCGACGAGCAAGCGCCAACCGCCCGCATCGTCATGGTGCCG
CGAAGGCGAGACGGGGGGAGCCGAGAGCGCGTGTCGGCCTCCTTCAACCC
GTTGTTGCGCGTTCTCGTCGCAACCTTGGCCACCGCCGCCGCCGGCACAA
CAACCTGTGGTGCACTTCAATCACCACGGTCTACACTACGCGGGCACCGT
CGCTGTGGCGGCGGCAACCCTACGGCGGCGTGGGGATCCGCCGCCCCCGG
GGCTGTCCGAGCGAGGCAGCAGTCGCGGTGGGGGCGGAGTGGTGCAGCTA
GAGCGACACCGACG
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